Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: illuminaio
https://packages.ecosyste.ms/registries/bioconductor.org/packages/illuminaio
Parsing Illumina Microarray Output Files
1 version
Latest release: 8 months ago
12 dependent packages
377,639 downloads total
Papers Mentioning illuminaio 12
10.1093/bioinformatics/bty713
Bigmelon: tools for analysing large DNA methylation datasetsCited by: 47
Author(s): T.J. Gorrie-Stone, Melissa Smart, Ayden Saffari, Karim Malki, Eilís Hannon, Joe Burrage, Jonathan Mill, Meena Kumari, Leonard C Schalkwyk
Software Mentions: 13
Published: almost 6 years ago
10.12688/f1000research.12544.1
Easy and efficient ensemble gene set testing with EGSEACited by: 45
Author(s): Monther Alhamdoosh, Charity W. Law, Tian Li, Julie Sheridan, Milica Ng, Matthew E. Ritchie
Software Mentions: 12
Published: over 6 years ago
10.3389/fgene.2020.586602
Multi-Approach Bioinformatics Analysis of Curated Omics Data Provides a Gene Expression Panorama for Multiple Cancer TypesCited by: 13
Author(s): Bruno César Feltes, Joice de Faria Poloni, Itamar José Guimarães Nunes, Sara Socorro Faria, Márcio Dorn
Software Mentions: 10
Published: over 3 years ago
10.12688/f1000research.2-264.v1
illuminaio: An open source IDAT parsing tool for Illumina microarraysCited by: 59
Author(s): Mike L. Smith, Keith A. Baggerly, Henrik Bengtsson, Matthew E. Ritchie, Kasper D. Hansen
Software Mentions: 9
Published: over 10 years ago
10.1186/s13059-014-0465-4
DiffVar: a new method for detecting differential variability with application to methylation in cancer and agingCited by: 84
Author(s): Belinda Phipson, Alicia Oshlack
Software Mentions: 7
Published: almost 10 years ago
10.1186/s13059-014-0503-2
Functional normalization of 450k methylation array data improves replication in large cancer studiesCited by: 640
Author(s): Jean Philippe Fortin, Aurélie Labbe, Mathieu Lemire, Brent W. Zanke, Thomas J. Hudson, Elana J. Fertig, Celia M.T. Greenwood, Kasper D. Hansen
Software Mentions: 6
Published: over 9 years ago
10.12688/f1000research.4680.2
shinyMethyl: interactive quality control of Illumina 450k DNA methylation arrays in RCited by: 96
Author(s): Jean Philippe Fortin, Elana J. Fertig, Kasper D. Hansen
Software Mentions: 6
Published: over 9 years ago
10.1186/s13059-015-0741-y
Reconstructing A/B compartments as revealed by Hi-C using long-range correlations in epigenetic dataCited by: 222
Author(s): Jean Philippe Fortin, Kasper D. Hansen
Software Mentions: 6
Published: almost 9 years ago
10.1186/1471-2105-15-158
KRLMM: an adaptive genotype calling method for common and low frequency variantsCited by: 4
Author(s): Ruijie Liu, Zhiyin Dai, Meredith Yeager, Rafael A. Irizarry, Matthew E. Ritchie
Software Mentions: 4
Published: about 10 years ago
10.1038/s41598-020-78809-x
Epigenetic differences at the HTR2A locus in progressive multiple sclerosis patientsCited by: 8
Author(s): Vicki E. Maltby, Rodney Arthur Lea, Sean M Burnard, Alexandre Xavier, Thao Van Cao, Nicole White, Kira Groen, Katherine Sanders, Rebecca Seeto, Samara Bray, Melissa Gresle, Louise Laverick, Helmut Butzkueven, Rodney J. Scott, Jeannette Lechner‐Scott
Software Mentions: 3
Published: over 3 years ago
10.18632/oncotarget.16258
Early detection of gastric cancer using global, genome-wide and <i>IRF4, ELMO1, CLIP4</i> and <i>MSC</i> DNA methylation in endoscopic biopsiesCited by: 34
Author(s): Francesca Pirini, Sassan Noazin, M Helena Jahuira Arias, Sebastian Rodríguez‐Torres, Leah Friess, Christina Michailidi, Jaime Cok, J Combe, Gloria Vargas, Wiliam A. Prado, Ethan Soudry, Jimena Pérez, Tikki Yudin, Andrea Mancinelli, Helen Unger, Carmen Ili-Gangas, Priscilla Brebi-Mieville, Douglas E. Berg, Masamichi Hayashi, David Sidransky, Robert H. Gilman, Rafael Guerrero-Preston
Software Mentions: 2
Published: about 7 years ago
10.18632/oncotarget.27910
Effect of cell microenvironment on the drug sensitivity of hepatocellular cancer cellsCited by: 3
Author(s): Bhaskar Bhattacharya, Daniel Q. Huang, Seng Hui Low, Gim Hwa Tan, Min Ji Han, Supriya Singh, Benny Tang, Sheng Chun Chang, Joey Sze Yun Lim, Mohd Feroz Mohd Omar, Yock Young Dan, Richie Soong
Software Mentions: 2
Published: about 3 years ago