Papers: 10.1093/bioinformatics/bty713

https://doi.org/10.1093/bioinformatics/bty713

Bigmelon: tools for analysing large DNA methylation datasets

Cited by: 47
Author(s): T.J. Gorrie-Stone, Melissa Smart, Ayden Saffari, Karim Malki, Eilís Hannon, Joe Burrage, Jonathan Mill, Meena Kumari, Leonard C Schalkwyk
Published: about 8 years ago

Software Mentions 13

bioconductor: bigmelon
Illumina methylation array analysis for large experiments
Papers that mentioned: 7
Very Likely Science (100)
bioconductor: bumphunter
Bump Hunter
Papers that mentioned: 46
Very Likely Science (100)
bioconductor: ChAMP
Chip Analysis Methylation Pipeline for Illumina HumanMethylation450 and EPIC
Papers that mentioned: 208
Very Likely Science (100)
bioconductor: gdsfmt
R Interface to CoreArray Genomic Data Structure (GDS) Files
Papers that mentioned: 23
Very Likely Science (100)
bioconductor: GWASTools
Tools for Genome Wide Association Studies
Papers that mentioned: 17
Very Likely Science (100)
bioconductor: illuminaio
Parsing Illumina Microarray Output Files
Papers that mentioned: 12
Very Likely Science (100)
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
Very Likely Science (78)
bioconductor: MethylAid
Visual and interactive quality control of large Illumina DNA Methylation array data sets
Papers that mentioned: 28
Very Likely Science (100)
bioconductor: methylumi
Handle Illumina methylation data
Papers that mentioned: 75
Very Likely Science (100)
bioconductor: minfi
Analyze Illumina Infinium DNA methylation arrays
Papers that mentioned: 506
Very Likely Science (100)
bioconductor: RnBeads
RnBeads
Papers that mentioned: 145
Very Likely Science (90)
bioconductor: SNPRelate
Parallel Computing Toolset for Relatedness and Principal Component Analysis of SNP Data
Papers that mentioned: 204
Very Likely Science (100)
bioconductor: wateRmelon
Illumina 450 and EPIC methylation array normalization and metrics
Papers that mentioned: 108
Very Likely Science (98)