bioconductor: MethylAid | Projects

10.1093/bioinformatics/bty713

Bigmelon: tools for analysing large DNA methylation datasets
Cited by: 47
Author(s): T.J. Gorrie-Stone, Melissa Smart, Ayden Saffari, Karim Malki, Eilís Hannon, Joe Burrage, Jonathan Mill, Meena Kumari, Leonard C Schalkwyk
Software Mentions: 13
Published: about 6 years ago

10.3390/jcm9041055

Whole-Genome DNA Methylation Profiling of CD14+ Monocytes Reveals Disease Status and Activity Differences in Crohn’s Disease Patients
Cited by: 12
Author(s): Andrew Y. Li Yim, Nicolette W. Duijvis, Mohammed Ghiboub, Catriona Sharp, Enrico Ferrero, Marcel M.A.M. Mannens, Geert D’Haens, Wouter J. de Jonge, Anje A. te Velde, Peter Henneman
Software Mentions: 11
Published: over 4 years ago

10.1186/s13148-019-0678-1

Neuronal methylome reveals CREB-associated neuro-axonal impairment in multiple sclerosis
Cited by: 22
Author(s): Lara Kular, Maria Needhamsen, Milena Z. Adzemovic, Tatiana V. Kramarova, David Gomez-Cabrero, Ewoud Ewing, Eliane Piket, Jesper Tegnér, Stephan Beck, Fredrik Piehl, Lou Brundin, Maja Jagodic
Software Mentions: 9
Published: over 5 years ago

10.1186/s13059-016-1000-6

Blood lipids influence DNA methylation in circulating cells
Cited by: 149
Author(s): Koen F. Dekkers, Maarten van Iterson, Roderick C. Slieker, Matthijs Moed, Marc Jan Bonder, M.A. van Galen, Hailiang Mei, Daria V. Zhernakova, Leonard H van den Berg, Joris Deelen, Jenny van Dongen, Diana van Heemst, Albert Hofman, Jouke Jan Hottenga, Carla Kallen, Casper G. Schalkwijk, Coen D. A. Stehouwer, Ettje F. Tigchelaar, André G. Uitterlinden, Gonneke Willemsen, Alexandra Zhernakova, Lude Franke, Peter A.C. ’t Hoen, Ritsert C. Jansen, Joyce B. J. van Meurs, Dorret I. Boomsma, Cornelia M. van Duijn, Marleen M.J. van Greevenbroek, Jan H. Veldink, Cisca Wijmenga, Erik W. van Zwet, P. Eline Slagboom, J. Wouter Jukema, Bastiaan T. Heijmans
Software Mentions: 9
Published: over 8 years ago

10.1186/s13073-015-0225-4

Many obesity-associated SNPs strongly associate with DNA methylation changes at proximal promoters and enhancers
Cited by: 104
Author(s): Sarah Voisin, Markus Sällman Almén, Galina Yurevna Zheleznyakova, Lina Lundberg, Sanaz Zarei, Sandra Castillo, Fia Ence Eriksson, Emil Nilsson, Matthias Blüher, Yvonne Böttcher, Peter Kovacs, Jānis Kloviņš, Mathias Rask‐Andersen, Helgi B. Schiöth
Software Mentions: 9
Published: almost 9 years ago

10.1371/journal.pone.0209656

A distinct epigenetic profile distinguishes stenotic from non-inflamed fibroblasts in the ileal mucosa of Crohn’s disease patients
Cited by: 14
Author(s): Andrew Y. Li Yim, Jessica R. de Bruyn, Nicolette W. Duijvis, Catriona Sharp, Enrico Ferrero, Wouter J. de Jonge, Manon E. Wildenberg, Marcel M.A.M. Mannens, Christianne J. Buskens, Geert R. D’Haens, Peter Henneman, Anje A. te Velde
Software Mentions: 9
Published: almost 6 years ago

10.1186/s13059-020-02114-z

Genome-wide identification of genes regulating DNA methylation using genetic anchors for causal inference
Cited by: 22
Author(s): Paul J. Hop, René Luijk, Lucia Daxinger, Maarten van Iterson, Koen F. Dekkers, Rick Jansen, Bastiaan T. Heijmans, Peter A.C. ’t Hoen, Joyce van Meurs, Rick Jansen, Lude Franke, Dorret I. Boomsma, René Pool, Jenny van Dongen, Jouke Jan Hottenga, Marleen M.J. van Greevenbroek, Coen D.A. Stehouwer, Carla J.H. van der Kallen, Casper G. Schalkwijk, Cisca Wijmenga, Sasha Zhernakova, Ettje F. Tigchelaar, P. Eline Slagboom, Marian Beekman, Joris Deelen, Diana van Heemst, Jan H. Veldink, Leonard H. van den Berg, Cornelia M. van Duijn, Aaron Isaacs, André G. Uitterlinden, P. Mila Jhamai, Michaël Verbiest, H. Eka D. Suchiman, Marijn Verkerk, Ruud van der Breggen, Jeroen van Rooij, Nico Lakenberg, Hailiang Mei, Maarten van Iterson, Dasha V. Zhernakova, Peter van ’t Hof, Patrick Deelen, Peter A.C. ’t Hoen, Martijn Vermaat, René Luijk, Marc Jan Bonder, Freerk van Dijk, Wibowo Arindrarto, Szymon M. Kiełbasa, Erik W. van Zwet, Peter-Bram ’t Hoen, Joyce B. J. van Meurs, Peter A.C. ’t Hoen, M. Arfan Ikram, Marleen M.J. van Greevenbroek, Dorret I. Boomsma, P. Eline Slagboom, Jan H. Veldink, Erik W. van Zwet, Bastiaan T. Heijmans
Software Mentions: 8
Published: about 4 years ago

10.1038/tp.2016.275

A methylome-wide mQTL analysis reveals associations of methylation sites with GAD1 and HDAC3 SNPs and a general psychiatric risk score
Cited by: 28
Author(s): Diana‐Maria Ciuculete, Adrian Boström, Sarah Voisin, H. Philipps, Olga E. Titova, Marcus Bandstein, Lamia Nikontovic, Michael J. Williams, Jessica Mwinyi, Helgi B. Schiöth
Software Mentions: 8
Published: over 7 years ago

10.1186/s13148-016-0230-5

Peripheral blood methylation profiling of female Crohn’s disease patients
Cited by: 40
Author(s): Andrew Y. Li Yim, Nicolette W. Duijvis, Jing Hua Zhao, Wouter J. de Jonge, Geert R. D’Haens, Marcel M.A.M. Mannens, Adri N. Mul, Anje A. te Velde, Peter Henneman
Software Mentions: 8
Published: over 8 years ago

10.1007/s10522-019-09818-1

Epigenome-wide exploratory study of monozygotic twins suggests differentially methylated regions to associate with hand grip strength
Cited by: 7
Author(s): Mette Soerensen, Weilong Li, Birgit Debrabant, Marianne Nygaard, Jonas Mengel‐From, Morten Frost, Kaare Christensen, Lene Christiansen, Qihua Tan
Software Mentions: 5
Published: over 5 years ago

10.3389/fgene.2019.00770

Maternal Smoking During Pregnancy Induces Persistent Epigenetic Changes Into Adolescence, Independent of Postnatal Smoke Exposure and Is Associated With Cardiometabolic Risk
Cited by: 65
Author(s): Sebastian Rauschert, Phillip E. Melton, Graham C. Burdge, Jeffrey M. Craig, Keith M. Godfrey, Joanna D. Holbrook, Karen A. Lillycrop, Trevor A. Mori, Lawrence J. Beilin, Wendy H. Oddy, Craig E. Pennell, Rae‐Chi Huang
Software Mentions: 5
Published: about 5 years ago

10.1038/s41598-020-61649-0

Epigenome-wide association study for perceived discrimination among sub-Saharan African migrants in Europe - the RODAM study
Cited by: 6
Author(s): Loes C. van der Laan, Karlijn Meeks, Felix P Chilunga, Charles Agyemang, Andrea Venema, Marcel M.A.M. Mannens, Mohammad Hadi Zafarmand, Kerstin Klipstein‐Grobusch, Liam Smeeth, Adebowale Adeyemo, Peter Henneman
Software Mentions: 5
Published: over 4 years ago

10.3390/nu11112804

DNA Methylation Signatures of Breastfeeding in Buccal Cells Collected in Mid-Childhood
Cited by: 16
Author(s): Veronika V. Odintsova, Fiona A. Hagenbeek, Matthew Suderman, Doretta Caramaschi, Catharina E. M. van Beijsterveldt, Noah A. Kallsen, Erik A. Ehli, Gareth E. Davies, Г. Т. Сухих, Vassilios Fanos, Caroline L Relton, Meike Bartels, Dorret I. Boomsma, Jenny van Dongen
Software Mentions: 4
Published: almost 5 years ago

10.1093/bioinformatics/bty476

Meffil: efficient normalization and analysis of very large DNA methylation datasets
Cited by: 173
Author(s): Josine L. Min, Gibran Hemani, George Davey Smith, Caroline L Relton, Matthew Suderman
Software Mentions: 4
Published: over 6 years ago

10.1186/s13148-019-0749-3

A genome-wide DNA methylation signature for SETD1B-related syndrome
Cited by: 41
Author(s): Izabela M. Krzyzewska, Saskia M. Maas, Peter Henneman, Karin van der Lip, Andrea Venema, Kristin W. Barañano, Anna Chassevent, Erfan Aref‐Eshghi, Anthonie J. van Essen, Tokiko Fukuda, Hiroko Ikeda, Marie Line Jacquemont, H.-G. Kim, Audrey Labalme, Lewis Sm, Gaëtan Lesca, Irene Madrigal, Sonal Mahida, Naomichi Matsumoto, Raquel Rabionet, Evica Rajcan‐Separovic, Ying Qiao, Bekim Sadiković, Hirotomo Saitsu, David A. Sweetser, Mariëlle Alders, Marcel M.A.M. Mannens
Software Mentions: 4
Published: almost 5 years ago

10.1038/s42003-019-0506-3

The role of GRHL2 and epigenetic remodeling in epithelial–mesenchymal plasticity in ovarian cancer cells
Cited by: 55
Author(s): Vin Yee Chung, Tuan Zea Tan, Jieru Ye, Rui Huang, Hung Cheng Lai, Dennis Kappei, Heike Wollmann, Ernesto Guccione, Ruby Yun‐Ju Huang
Software Mentions: 4
Published: about 5 years ago

10.1186/s13072-018-0225-x

Genome-wide analysis of DNA methylation in buccal cells: a study of monozygotic twins and mQTLs
Cited by: 31
Author(s): Jenny van Dongen, Erik A. Ehli, Ritsert C. Jansen, Catharina E. M. van Beijsterveldt, Gonneke Willemsen, Jouke Jan Hottenga, Noah A. Kallsen, Stephen Peyton, Charles E. Breeze, C. Kluft, Bastiaan T. Heijmans, Meike Bartels, Gareth E. Davies, Dorret I. Boomsma
Software Mentions: 4
Published: about 6 years ago

10.1038/s41398-019-0548-9

Epigenome-wide association study of depression symptomatology in elderly monozygotic twins
Cited by: 44
Author(s): Anna Starnawska, Qihua Tan, Mette Soerensen, Matt McGue, Ole Mors, Anders D. Børglum, Kaare Christensen, Mette Nyegaard, Lene Christiansen
Software Mentions: 4
Published: about 5 years ago

10.1111/acel.13293

Novel DNA methylation marker discovery by assumption‐free genome‐wide association analysis of cognitive function in twins
Cited by: 4
Author(s): Afsaneh Mohammadnejad, Mette Soerensen, Jan Baumbach, Jonas Mengel‐From, Weilong Li, Jesper Lund, Shuxia Li, Lene Christiansen, Kaare Christensen, Jacob Hjelmborg, Qihua Tan
Software Mentions: 4
Published: over 3 years ago

10.1186/s13072-019-0279-4

Human monocyte-to-macrophage differentiation involves highly localized gain and loss of DNA methylation at transcription factor binding sites
Cited by: 29
Author(s): Koen F. Dekkers, Annette E. Neele, J. Wouter Jukema, Bastiaan T. Heijmans, Menno P.J. de Winther
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0194938

Widespread domain-like perturbations of DNA methylation in whole blood of Down syndrome neonates
Cited by: 22
Author(s): Peter Henneman, Arjan Bouman, Adri N. Mul, Lia Knegt, Anne-Marie van der Kevie-Kersemaekers, Nitash Zwaveling-Soonawala, Hanne Meijers-Heijboer, A S Paul van Trotsenburg, Marcel M.A.M. Mannens
Software Mentions: 3
Published: over 6 years ago

10.1186/s13148-019-0649-6

Genome-wide methylation profiling of Beckwith-Wiedemann syndrome patients without molecular confirmation after routine diagnostics
Cited by: 17
Author(s): Izabela M. Krzyzewska, Mariëlle Alders, Saskia M. Maas, Jet Bliek, Andrea Venema, Peter Henneman, Faisal I. Rezwan, Karin van der Lip, Adri N. Mul, Deborah J G Mackay, Marcel M.A.M. Mannens
Software Mentions: 3
Published: over 5 years ago

10.1186/s13148-020-00831-7

Genome-wide analysis of constitutional DNA methylation in familial melanoma
Cited by: 3
Author(s): Catarina Salgado, Nelleke A. Gruis, Bastiaan T. Heijmans, Jan Oosting, Remco van Doorn
Software Mentions: 2
Published: over 4 years ago

10.1186/s13148-017-0403-x

An epigenome-wide association study in whole blood of measures of adiposity among Ghanaians: the RODAM study
Cited by: 55
Author(s): Karlijn Meeks, Peter Henneman, Andrea Venema, Tom Burr, Cecilia Galbete, Ina Danquah, Matthias B. Schulze, Frank P. Mockenhaupt, Ellis Owusu‐Dabo, Charles N. Rotimi, Juliet Addo, Liam Smeeth, Silver Bahendeka, Joachim Spranger, Marcel M.A.M. Mannens, Mohammad Hadi Zafarmand, Charles Agyemang, Adebowale Adeyemo
Software Mentions: 2
Published: about 7 years ago

10.1186/s13148-017-0427-2

Lung function discordance in monozygotic twins and associated differences in blood DNA methylation
Cited by: 18
Author(s): Anneli Clea Bolund, Anna Starnawska, Martin Miller, Vivi Schlünssen, Vibeke Backer, Anders D. Børglum, Kaare Christensen, Qihua Tan, Lene Christiansen, Torben Sigsgaard
Software Mentions: 2
Published: almost 7 years ago

10.3389/fnagi.2017.00413

Epigenome-Wide Association Study of Cognitive Functioning in Middle-Aged Monozygotic Twins
Cited by: 42
Author(s): Anna Starnawska, Qihua Tan, Matt McGue, Ole Mors, Anders D. Børglum, Kaare Christensen, Mette Nyegaard, Lene Christiansen
Software Mentions: 2
Published: almost 7 years ago

10.1186/s13148-021-01038-0

Lifestyle weight-loss intervention may attenuate methylation aging: the CENTRAL MRI randomized controlled trial
Cited by: 18
Author(s): Anat Yaskolka Meir, Maria Keller, Stephan H. Bernhart, Ehud Rinott, Gal Tsaban, Hila Zelicha, Alon Kaplan, Dan Schwarzfuchs, Ilan Shelef, Yftach Gepner, Jun Li, Yifei Lin, Matthias Blüher, Uta Ceglarek, Michael Stümvoll, Peter F. Stadler, Meir J. Stampfer, Peter Kovacs, Liming Liang, Iris Shai
Software Mentions: 1
Published: over 3 years ago

10.3389/fnins.2020.00233

A Genome-Wide Integrative Association Study of DNA Methylation and Gene Expression Data and Later Life Cognitive Functioning in Monozygotic Twins
Cited by: 5
Author(s): Mette Soerensen, Dominika Marzena Hozakowska-Roszkowska, Marianne Nygaard, Martin Jakob Larsen, Veit Schwämmle, Kaare Christensen, Lene Christiansen, Qihua Tan
Software Mentions: 1
Published: over 4 years ago

Ecosyste.ms: Papers

Projects: bioconductor: MethylAid

Papers Mentioning MethylAid 28