Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-016-1000-6

https://doi.org/10.1186/s13059-016-1000-6

Blood lipids influence DNA methylation in circulating cells

Cited by: 149
Author(s): Koen F. Dekkers, Maarten van Iterson, Roderick C. Slieker, Matthijs Moed, Marc Jan Bonder, M.A. van Galen, Hailiang Mei, Daria V. Zhernakova, Leonard H van den Berg, Joris Deelen, Jenny van Dongen, Diana van Heemst, Albert Hofman, Jouke Jan Hottenga, Carla Kallen, Casper G. Schalkwijk, Coen D. A. Stehouwer, Ettje F. Tigchelaar, André G. Uitterlinden, Gonneke Willemsen, Alexandra Zhernakova, Lude Franke, Peter A.C. ’t Hoen, Ritsert C. Jansen, Joyce B. J. van Meurs, Dorret I. Boomsma, Cornelia M. van Duijn, Marleen M.J. van Greevenbroek, Jan H. Veldink, Cisca Wijmenga, Erik W. van Zwet, P. Eline Slagboom, J. Wouter Jukema, Bastiaan T. Heijmans
Published: over 8 years ago

Software Mentions 9

bioconductor: cqn
Conditional quantile normalization
Papers that mentioned: 14
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
bioconductor: MethylAid
Visual and interactive quality control of large Illumina DNA Methylation array data sets
Papers that mentioned: 28
bioconductor: minfi
Analyze Illumina Infinium DNA methylation arrays
Papers that mentioned: 506
cran: AER
Applied Econometrics with R
Papers that mentioned: 63
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
pypi: cutadapt
Adapter trimming and other preprocessing of high-throughput sequencing reads
Papers that mentioned: 1,562
pypi: Sickle
A lightweight OAI client library for Python
Papers that mentioned: 740
pypi: voom
A python message bus that you can put 4 million volts through.
Papers that mentioned: 136