Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3390/jcm9041055

https://doi.org/10.3390/jcm9041055

Cited by: 12
Author(s): Andrew Y. Li Yim, Nicolette W. Duijvis, Mohammed Ghiboub, Catriona Sharp, Enrico Ferrero, Marcel M.A.M. Mannens, Geert D’Haens, Wouter J. de Jonge, Anje A. te Velde, Peter Henneman
Published: about 4 years ago

Software Mentions 11

bioconductor: AnnotationHub
Client to access AnnotationHub resources
Papers that mentioned: 39
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: DMRcate
Methylation array and sequencing spatial analysis methods
Papers that mentioned: 132
bioconductor: EmpiricalBrownsMethod
Uses Brown's method to combine p-values from dependent tests
Papers that mentioned: 1
bioconductor: ggbio
Visualization tools for genomic data
Papers that mentioned: 53
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
bioconductor: MethylAid
Visual and interactive quality control of large Illumina DNA Methylation array data sets
Papers that mentioned: 28
bioconductor: minfi
Analyze Illumina Infinium DNA methylation arrays
Papers that mentioned: 506
bioconductor: shinyMethyl
Interactive visualization for Illumina methylation arrays
Papers that mentioned: 18
pypi: environment
This library provides parsing and validation of environment variables.
Papers that mentioned: 569
pypi: ggplot
ggplot for python
Papers that mentioned: 796