pypi: environment | Projects | Ecosyste.ms: Papers

10.1038/s41598-019-55469-0

Minor compositional alterations in faecal microbiota after five weeks and five months storage at room temperature on filter papers
Cited by: 6
Author(s): Sebastian von Huth, Louise B. Thingholm, Corinna Bang, Malte Rühlemann, André Franke, Uffe Holmskov
Software Mentions: 20
Published: about 5 years ago

10.3389/fchem.2021.734132

The “DOLPHINS” Project: A Low-Cost Real-Time Multivariate Process Control From Large Sensor Arrays Providing Sparse Binary Data
Cited by: 1
Author(s): Eugenio Alladio, Marcello Baricco, Vincenzo Leogrande, Renato Pagliari, Fabio Pozzi, Paolo Foglio, Marco Vincenti
Software Mentions: 15
Published: over 3 years ago

10.1371/journal.pone.0237368

Patient propagules: Do soil archives preserve the legacy of fungal and prokaryotic communities?
Cited by: 9
Author(s): Gian Maria Niccolò Benucci, Bryan Rennick, Gregory Bonito
Software Mentions: 14
Published: over 4 years ago

10.1093/molbev/msab063

Extensive Genome-Wide Phylogenetic Discordance Is Due to Incomplete Lineage Sorting and Not Ongoing Introgression in a Rapidly Radiated Bryophyte Genus
Cited by: 42
Author(s): Olena Meleshko, Michael D. Martin, Thorfinn Sand Korneliussen, C. Schluechter, P. Lamkowski, Jeremy Schmutz, Adam Healey, Bryan Piatkowski, A. Jonathan Shaw, David J. Weston, Kjell Ivar Flatberg, Péter Szövényi, Kristian Hassel, Hans K. Stenøien
Software Mentions: 14
Published: almost 4 years ago

10.3390/jcm9041055

Whole-Genome DNA Methylation Profiling of CD14+ Monocytes Reveals Disease Status and Activity Differences in Crohn’s Disease Patients
Cited by: 12
Author(s): Andrew Y. Li Yim, Nicolette W. Duijvis, Mohammed Ghiboub, Catriona Sharp, Enrico Ferrero, Marcel M.A.M. Mannens, Geert D’Haens, Wouter J. de Jonge, Anje A. te Velde, Peter Henneman
Software Mentions: 11
Published: over 4 years ago

10.3389/fpsyg.2018.00513

Modeling Linguistic Variables With Regression Models: Addressing Non-Gaussian Distributions, Non-independent Observations, and Non-linear Predictors With Random Effects and Generalized Additive Models for Location, Scale, and Shape
Cited by: 20
Author(s): Christophe Coupé
Software Mentions: 10
Published: over 6 years ago

10.1371/journal.pone.0131435

Limitations of Climatic Data for Inferring Species Boundaries: Insights from Speckled Rattlesnakes
Cited by: 30
Author(s): Jesse M. Meik, Jeffrey W. Streicher, A. Michelle Lawing, Oscar Flores‐Villela, Matthew K. Fujita
Software Mentions: 10
Published: over 9 years ago

10.1038/s41598-020-72018-2

Spatial structure, parameter nonlinearity, and intelligent algorithms in constructing pedotransfer functions from large-scale soil legacy data
Cited by: 6
Author(s): Poulamee Chakraborty, Bhabani S. Das, Hitesh B. Vasava, Niranjan Panigrahi, Priyabrata Santra
Software Mentions: 9
Published: over 4 years ago

10.1371/journal.pone.0209656

A distinct epigenetic profile distinguishes stenotic from non-inflamed fibroblasts in the ileal mucosa of Crohn’s disease patients
Cited by: 14
Author(s): Andrew Y. Li Yim, Jessica R. de Bruyn, Nicolette W. Duijvis, Catriona Sharp, Enrico Ferrero, Wouter J. de Jonge, Manon E. Wildenberg, Marcel M.A.M. Mannens, Christianne J. Buskens, Geert R. D’Haens, Peter Henneman, Anje A. te Velde
Software Mentions: 9
Published: almost 6 years ago

10.3389/fimmu.2019.02796

Diagnostic Profiling of the Human Public IgM Repertoire With Scalable Mimotope Libraries
Cited by: 8
Author(s): Anastas Pashov, Velizar Shivarov, Maya Dimitrov Hadzhieva, V. Kostov, Dilyan Ferdinandov, Karen‐Marie Heintz, Shina Pashova, Milena Todorova, Tchavdar Vassilev, Thomas Kieber‐Emmons, Leonardo A. Meza‐Zepeda, Eivind Hovig
Software Mentions: 9
Published: about 5 years ago

10.3390/ijms21093139

The Dark Side of Orchid Symbiosis: Can Tulasnella calospora Decompose Host Tissues?
Cited by: 21
Author(s): Martino Adamo, Matteo Chialva, Jacopo Calevo, Silvia De Rose, Mariangela Girlanda, Silvia Perotto, Raffaella Balestrini
Software Mentions: 9
Published: over 4 years ago

10.1186/1471-2105-13-136

Down-weighting overlapping genes improves gene set analysis
Cited by: 120
Author(s): Adi L. Tarca, Sorin Drăghici, Gaurav Bhatti, Roberto Romero
Software Mentions: 9
Published: over 12 years ago

10.1038/s41598-019-39638-9

Gut microbiota of the European Brown Hare (Lepus europaeus)
Cited by: 14
Author(s): Gabrielle Stalder, Beate Pinior, Benjamin Zwirzitz, Igor Loncaric, Dennis Jakupović, Sebastian Vetter, Steve Smith, Annika Posautz, Franz Hoelzl, Martin Wagner, Daniel Hoffmann, Anna Kübber‐Heiss, Evelyne Mann
Software Mentions: 8
Published: almost 6 years ago

10.1155/2018/3719703

Quantitative Assessment of the Physiological Parameters Influencing QT Interval Response to Medication: Application of Computational Intelligence Tools
Cited by: 2
Author(s): Sebastian Polak, Barbara Wiśniowska, Aleksander Mendyk, Adam Pacławski, Jakub Szlęk
Software Mentions: 8
Published: almost 7 years ago

10.1186/s12940-016-0152-x

Assessing urinary flow rate, creatinine, osmolality and other hydration adjustment methods for urinary biomonitoring using NHANES arsenic, iodine, lead and cadmium data
Cited by: 69
Author(s): Daniel Middleton, Michael J. Watts, R. M. Lark, Chris Milne, David A. Polya
Software Mentions: 8
Published: over 8 years ago

10.1186/1471-2105-12-464

From hybridization theory to microarray data analysis: performance evaluation
Cited by: 4
Author(s): Fabrice Berger, Enrico Carlon
Software Mentions: 8
Published: about 13 years ago

10.1093/cercor/bhaa348

The Functional Foundations of Episodic Memory Remain Stable Throughout the Lifespan
Cited by: 3
Author(s): Didac Vidal‐Piñeiro, Markus Handal Sneve, Inge K. Amlien, Håkon Grydeland, Athanasia M. Mowinckel, James M Roe, Øystein Sørensen, Lars Nyberg, Kristine B. Walhovd, Anders M. Fjell
Software Mentions: 8
Published: about 4 years ago

10.1186/s12859-017-1998-9

Thresher: determining the number of clusters while removing outliers
Cited by: 36
Author(s): Min Wang, Zachary B. Abrams, Steven M. Kornblau, Kevin R. Coombes
Software Mentions: 8
Published: almost 7 years ago

10.3390/molecules26102854

Detection of Paratuberculosis in Dairy Herds by Analyzing the Scent of Feces, Alveolar Gas, and Stable Air
Cited by: 1
Author(s): M. Weber, Peter Gierschner, Anne Klassen, Elisa Kasbohm, Jochen K. Schubert, Wolfram Miekisch, Petra Reinhold, Heike Köhler
Software Mentions: 7
Published: over 3 years ago

10.7717/peerj.8103

Acquisition of fungi from the environment modifies ambrosia beetle mycobiome during invasion
Cited by: 33
Author(s): Davide Rassati, Lorenzo Marini, Antonino Malacrinò
Software Mentions: 7
Published: about 5 years ago

10.1371/journal.pone.0130659

The Biogeography of Putative Microbial Antibiotic Production
Cited by: 13
Author(s): Hélène Morlon, Timothy K. O’Connor, Jessica A. Bryant, Louise K. Charkoudian, Kathryn M. Docherty, E. B. Gareth Jones, Steven W. Kembel, Jessica L. Green, Brendan J. M. Bohannan
Software Mentions: 7
Published: over 9 years ago

10.1038/s41598-019-43125-6

Predicting protein-ligand interactions based on bow-pharmacological space and Bayesian additive regression trees
Cited by: 33
Author(s): Li Li, Ching Chiek Koh, Daniel Reker, J.B. Brown, Haishuai Wang, Nicholas Keone Lee, Hien-haw Liow, Hao Dai, H. K. Fan, Luonan Chen, Dong‐Qing Wei
Software Mentions: 7
Published: over 5 years ago

10.7717/peerj.1393

First description of underwater acoustic diversity in three temperate ponds
Cited by: 44
Author(s): Camille Desjonquères, Fanny Rybak, Marion Depraetere, Amandine Gasc, Isabelle Le Viol, Sandrine Pavoine, Jérôme Sueur
Software Mentions: 7
Published: about 9 years ago

10.1038/s41598-021-85016-9

Comparative analysis of machine learning algorithms for computer-assisted reporting based on fully automated cross-lingual RadLex mappings
Cited by: 4
Author(s): Máté E. Maros, Chang Gyu Cho, Andreas Junge, Benedikt Kämpgen, Victor Saase, Fabian Siegel, Frederik Trinkmann, Thomas Ganslandt, Christoph Groden, Holger Wenz
Software Mentions: 7
Published: almost 4 years ago

10.1371/journal.pone.0234848

Assessment of varying changes of vegetation and the response to climatic factors using GIMMS NDVI3g on the Tibetan Plateau
Cited by: 12
Author(s): Yuke Zhou, Jiangwen Fan, Xiaoying Wang
Software Mentions: 7
Published: over 4 years ago

10.3389/fmicb.2020.00669

Patterns in Microbial Assemblages Exported From the Meltwater of Arctic and Sub-Arctic Glaciers
Cited by: 20
Author(s): Tyler J. Kohler, Petra Vinšová, Lukáš Falteisek, Jakub D. Žárský, Jacob C. Yde, Jade E. Hatton, Jon R. Hawkings, Guillaume Lamarche-Gagnon, Eran Hood, Karen A. Cameron, Marek Stibal
Software Mentions: 7
Published: over 4 years ago

10.1111/acel.12819

Gene expression-based drug repurposing to target aging
Cited by: 53
Author(s): Handan Melike Dönertaş, Matías Fuentealba, Linda Partridge, Janet M. Thornton
Software Mentions: 7
Published: over 6 years ago

10.1186/s12864-016-3300-3

Assessing characteristics of RNA amplification methods for single cell RNA sequencing
Cited by: 32
Author(s): Hannah Dueck, Rizi Ai, Adrian Camarena, Bo Ding, Reymundo Dominguez, Oleg V. Evgrafov, Jian–Bing Fan, Stephen Fisher, Jennifer Herstein, Tae Kyung Kim, Jae Mun Kim, Ming-Yi Lin, Rui Li, William J. Mack, Sean McGroty, Joseph Nguyen, Neeraj Salathia, Jamie Shallcross, Tade Souaiaia, Jennifer M. Spaethling, Christopher Walker, Jinhui Wang, Kai Wang, Wei Wang, André Wildberg, Lina Zheng, Robert H. Chow, James Eberwine, James A. Knowles, Kun Zhang, Junhyong Kim
Software Mentions: 7
Published: about 8 years ago

10.15252/embj.2018101220

The interactome of <scp>KRAB</scp> zinc finger proteins reveals the evolutionary history of their functional diversification
Cited by: 58
Author(s): Pierre-Yves Helleboid, Moritz Heusel, Julien Duc, Cécile Piot, Christian W. Thorball, Andrea Coluccio, Julien Pontis, Michaël Imbeault, Priscilla Turelli, Ruedi Aebersold, Didier Trono
Software Mentions: 7
Published: over 5 years ago

10.3390/ani11051442

Agricultural Holdings and Slaughterhouses’ Impact on Patterns of Pathological Findings Observed during Post-Mortem Meat Inspection
Cited by: 5
Author(s): Johannes Klinger, Beate Conrady, Marina Mikula, Annemarie Käsbohrer
Software Mentions: 7
Published: over 3 years ago

10.3389/fimmu.2019.02903

Co-expression Networks Identify DHX15 RNA Helicase as a B Cell Regulatory Factor
Cited by: 6
Author(s): Thiago Detanico, Richard Virgen-Slane, Seth Steen-Fuentes, Wai Wai Lin, Antje Rhode-Kurnow, Elizabeth Chappell, Ricardo G. Correa, Michael J Dicandido, Moustapha Mbow, Jun Li, Carl F. Ware
Software Mentions: 7
Published: about 5 years ago

10.1186/s12868-018-0452-x

27th Annual Computational Neuroscience Meeting (CNS*2018): Part One
Cited by: 2
Author(s):
Software Mentions: 7
Published: about 6 years ago

10.1038/s41598-021-88745-z

A Graph Theory approach to assess nature’s contribution to people at a global scale
Cited by: 13
Author(s): Sílvia de Juan, Andrés Ospina-Álvarez, Sebastián Villasante, Ana Ruiz‐Frau
Software Mentions: 7
Published: over 3 years ago

10.1093/gigascience/giaa068

Watchdog 2.0: New developments for reusability, reproducibility, and workflow execution
Cited by: 8
Author(s): Michael Kluge, Marie-Sophie Friedl, Amrei L Menzel, Caroline C. Friedel
Software Mentions: 7
Published: over 4 years ago

10.1371/journal.pone.0037714

Dynamic Gene Expression in the Human Cerebral Cortex Distinguishes Children from Adults
Cited by: 32
Author(s): Kirstin N. Sterner, Amy Weckle, Harry T. Chugani, Adi L. Tarca, Chet C. Sherwood, Patrick R. Hof, Christopher W. Kuzawa, Amy M. Boddy, Asad Abbas, Ryan L. Raaum, Lucie Grégoire, Leonard Lipovich, Lawrence I. Grossman, Monica Uddin, Morris Goodman, Derek E. Wildman
Software Mentions: 6
Published: over 12 years ago

10.1038/s41598-019-40007-9

Language Outcomes in Adults with a History of Institutionalization: Behavioral and Neurophysiological Characterization
Cited by: 12
Author(s): Sergey A. Kornilov, Marina A. Zhukova, Irina V. Ovchinnikova, Irina V. Golovanova, O. Yu. Naumova, Tatiana Logvinenko, Aleksandra O. Davydova, M.V. Petrov, Maria Adebowale, Elena L. Grigorenko
Software Mentions: 6
Published: almost 6 years ago

10.1186/s12864-021-07437-0

Transcriptomics analysis of Toxoplasma gondii-infected mouse macrophages reveals coding and noncoding signatures in the presence and absence of MyD88
Cited by: 7
Author(s): Kayla L. Menard, Lijing Bu, Eric Denkers
Software Mentions: 6
Published: almost 4 years ago

10.3389/fncom.2014.00139

Diffusion approximation-based simulation of stochastic ion channels: which method to use?
Cited by: 8
Author(s): Danilo Pezo, Daniel Soudry, Patricio Orio
Software Mentions: 6
Published: about 10 years ago

10.1590/1678-4685-GMB-2017-0074

Skull shape and size variation within and between mendocinus and torquatus groups in the genus Ctenomys (Rodentia: Ctenomyidae) in chromosomal polymorphism context
Cited by: 11
Author(s): Rodrigo Fornel, Pedro Cordeiro‐Estrela, Thales Renato Ochotorena de Freitas
Software Mentions: 6
Published: almost 7 years ago

10.3389/fpsyg.2017.01268

Age-Dependent Positivity-Bias in Children’s Processing of Emotion Terms
Cited by: 17
Author(s): Daniela Bahn, Michael Vesker, José C. García Alanis, Gudrun Schwarzer, Christina Kauschke
Software Mentions: 6
Published: over 7 years ago

10.1038/s41598-018-19354-6

Capturing expert uncertainty in spatial cumulative impact assessments
Cited by: 14
Author(s): Alice R. Jones, Zoë A. Doubleday, Thomas A. A. Prowse, Kathryn H. Wiltshire, Marty R. Deveney, Tim M. Ward, Sally L. Scrivens, Phillip Cassey, Laura G. O’Connell, Bronwyn M. Gillanders
Software Mentions: 6
Published: almost 7 years ago

10.3390/ijms22031189

Comparison of Proteomic Technologies for Blood-Based Detection of Colorectal Cancer
Cited by: 7
Author(s): Megha Bhardwaj, Tobias Terzer, Petra Schrotz‐King, Hermann Brenner
Software Mentions: 6
Published: almost 4 years ago

10.1002/minf.202000005

Using Machine Learning Methods and Structural Alerts for Prediction of Mitochondrial Toxicity
Cited by: 30
Author(s): Jennifer Hemmerich, Florentina Troger, Barbara Füzi, Gerhard Ecker
Software Mentions: 6
Published: almost 5 years ago

10.1002/ece3.923

On the evolution of omnivory in a community context
Cited by: 24
Author(s): Alex M Chubaty, O. Brian, R. Will Stein, D. R. Gillespie, Lee M. Henry, Conan Phelan, Eiríkur Pálsson, Franz W. Simon, Bernard D. Roitberg
Software Mentions: 6
Published: almost 11 years ago

10.1186/s13104-017-2540-x

The effect of mislabeled phenotypic status on the identification of mutation-carriers from SNP genotypes in dairy cattle
Cited by: 6
Author(s): Stefano Biffani, Hubert Pausch, Hermann Schwarzenbacher, Filippo Biscarini
Software Mentions: 6
Published: over 7 years ago

10.3390/metabo11050269

Influence of Extraction Solvent on Nontargeted Metabolomics Analysis of Enrichment Reactor Cultures Performing Enhanced Biological Phosphorus Removal (EBPR)
Cited by: 4
Author(s): Nay Min Min Thaw Saw, Pipob Suwanchaikasem, Rogelio Zuniga-Montanez, Guanglei Qiu, Ezequiel M. Marzinelli, Stefan Wuertz, Rohan B.H. Williams
Software Mentions: 6
Published: over 3 years ago

10.1128/mSystems.00423-19

Network Analysis of the Papaya Orchard Virome from Two Agroecological Regions of Chiapas, Mexico
Cited by: 25
Author(s): Ricardo I. Alcalá-Briseño, Kena Casarrubias-Castillo, Diana López-Ley, Karen A. Garrett, Laura Silva-Rosales
Software Mentions: 6
Published: almost 5 years ago

10.7554/eLife.50103

Developmental variability channels mouse molar evolution
Cited by: 14
Author(s): Luke Hayden, Kateřina Lochovská, Marie Sémon, Sabrina Renaud, Marie Laure Delignette-Muller, Maurine Vilcot, Renata Peterková, Maria Hovořáková, Sophie Pantalacci
Software Mentions: 6
Published: almost 5 years ago

10.1186/s13148-015-0097-x

DNA methylation levels are highly correlated between pooled samples and averaged values when analysed using the Infinium HumanMethylation450 BeadChip array
Cited by: 15
Author(s): Cristina Gallego-Fábrega, Caty Carrera, Elena Muiño, Joan Montaner, Jurek Krupinski, Israel Fernández-Cadenas
Software Mentions: 6
Published: over 9 years ago

10.7554/eLife.63270

Dissecting phenotypic transitions in metastatic disease via photoconversion-based isolation
Cited by: 4
Author(s): Yogev Sela, Jinyang Li, Paola Kuri, Allyson J. Merrell, Ning Li, Chris Lengner, Pantelis Rompolas, Ben Z. Stanger
Software Mentions: 6
Published: almost 4 years ago

10.1371/journal.pone.0032724

Deep-Sequencing Protocols Influence the Results Obtained in Small-RNA Sequencing
Cited by: 33
Author(s): Joern Toedling, Nicolas Servant, Constance Ciaudo, Laurent Farinelli, Olivier Voinnet, Edith Heard, Emmanuel Barillot
Software Mentions: 6
Published: almost 13 years ago

10.1371/journal.pone.0004571

Transcription Factor Binding Sites Are Genetic Determinants of Retroviral Integration in the Human Genome
Cited by: 98
Author(s): Barbara Felice, Claudia Cattoglio, Davide Cittaro, Anna Testa, Annarita Miccio, G. Ferrari, Lucilla Luzi, Alessandra Recchia, Fulvio Mavilio
Software Mentions: 6
Published: almost 16 years ago

10.1186/1752-0509-8-17

Identification of core T cell network based on immunome interactome
Cited by: 4
Author(s): Gabriel Teku, Csaba Ortutay, Mauno Vihinen
Software Mentions: 6
Published: almost 11 years ago

10.1186/s40478-019-0681-y

A simplified approach using Taqman low-density array for medulloblastoma subgrouping
Cited by: 17
Author(s): Gustavo Alencastro Veiga Cruzeiro, Karina Bezerra Salomão, Carlos Alberto Oliveira de Biagi, Martin Baumgärtner, Dominik Sturm, Régia Caroline Peixoto Lira, Taciani de Almeida Magalhães, Mirella Baroni, Vanessa da Silva Silveira, Fabiano Pinto Saggioro, Ricardo Santos de Oliveira, Paulo Henrique dos Santos Klinger, Ana Luíza Seidinger, José Andrés Yunes, Rosane Gomes de Paula Queiróz, Sueli Mieko Oba-Shinjo, Carlos Alberto Scrideli, Suely Kazue Nagahashi Marie, Luíz Gonzaga Tone, Elvis Terci Valera
Software Mentions: 6
Published: almost 6 years ago

10.1016/j.tube.2019.101859

Distinct serum biosignatures are associated with different tuberculosis treatment outcomes
Cited by: 22
Author(s): Katharina Ronacher, Novel N. Chegou, Léanie Kleynhans, Joel Fleury Djoba Siawaya, Nelita du Plessis, André G. Loxton, Elizna Maasdorp, Gerard Tromp, Martin Kidd, Kim Stanley, Magdalena Kriel, Ângela Menezes, Andrea Gutschmidt, Gian D. van der Spuy, Robin M. Warren, Reynaldo Dietze, Alphonse Okwera, Bonnie Thiel, John T. Belisle, Jacqueline M. Cliff, W. Henry Boom, John L. Johnson, Paul D. van Helden, Hazel M. Dockrell, Gerhard Walzl
Software Mentions: 6
Published: over 5 years ago

10.1186/1471-2105-12-35

VennDiagram: a package for the generation of highly-customizable Venn and Euler diagrams in R
Cited by: 1,681
Author(s): Hanbo Chen, Paul C. Boutros
Software Mentions: 5
Published: almost 14 years ago

10.1038/s41598-018-29677-z

Automated analysis of lipid drug-response markers by combined fast and high-resolution whole cell MALDI mass spectrometry biotyping
Cited by: 18
Author(s): David Weigt, Denis A. Sammour, Timon Ulrich, Bogdan Munteanu, Carsten Hopf
Software Mentions: 5
Published: over 6 years ago

10.1038/srep39002

Phenotypic plasticity in sex pheromone production in Bicyclus anynana butterflies
Cited by: 28
Author(s): Emilie Dion, Antónia Monteiro, Joanne Y. Yew
Software Mentions: 5
Published: about 8 years ago

10.1186/s13321-014-0044-4

InCHlib – interactive cluster heatmap for web applications
Cited by: 45
Author(s): Ctibor Škuta, Petr Bartůněk, Daniel Svozil
Software Mentions: 5
Published: over 10 years ago

10.3389/fonc.2021.729219

A 4-Gene Signature Associated With Recurrence in Low- and Intermediate-Risk Endometrial Cancer
Cited by: 5
Author(s): Diocésio Alves Pinto de Andrade, Luciane Sussuchi da Silva, Ana Carolina Laus, Marcos Alves de Lima, Gustavo Nóriz Berardinelli, Vinícius Duval da Silva, Graziela de Macêdo Matsushita, Murilo Bonatelli, Aline Larissa Virginio da Silva, Adriane Feijó Evangelista, Jesus Paula Carvalho, Rui Manuel Reis, Ricardo dos Reis
Software Mentions: 5
Published: over 3 years ago

10.1111/acel.12925

Conservation of physiological dysregulation signatures of aging across primates
Cited by: 24
Author(s): Gabriel Dansereau, Tina W. Wey, Véronique Legault, Marie-Christine Brunet, Joseph W. Kemnitz, Luigi Ferrucci, Alan A. Cohen
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.ppat.1008057

Astrovirus replication in human intestinal enteroids reveals multi-cellular tropism and an intricate host innate immune landscape
Cited by: 65
Author(s): Abimbola O. Kolawole, Carmen Mirabelli, David R. Hill, Sophia A. Svoboda, Andrew B. Janowski, Karla D. Passalacqua, Benancio N. Rodriguez, Michael K. Dame, Pamela Freiden, Ryan P. Berger, Diem Vu, Myra Hosmillo, Mary X. O’Riordan, Stacey Schultz‐Cherry, Susana Guix, Jason R. Spence, David Wang, Christiane E. Wobus
Software Mentions: 5
Published: about 5 years ago

10.1186/s12983-017-0222-0

Adaptive responses to salinity stress across multiple life stages in anuran amphibians
Cited by: 54
Author(s): Molly A. Albecker, Michael McCoy
Software Mentions: 5
Published: over 7 years ago

10.1002/1878-0261.12654

Programmed death‐ligand 1 gene expression is a prognostic marker in early breast cancer and provides additional prognostic value to 21‐gene and 70‐gene signatures in estrogen receptor‐positive disease
Cited by: 18
Author(s): Ioannis Zerdes, Emmanouil G. Sifakis, Alexios Matikas, Sebastian Chrétien, Nicholas P. Tobin, Johan Hartman, George Z. Rassidakis, Jonas Bergh, Theodoros Foukakis
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0153932

Transcriptional Profiling of Ileocecal Valve of Holstein Dairy Cows Infected with Mycobacterium avium subsp. Paratuberculosis
Cited by: 24
Author(s): Randy J. Hempel, John P. Bannantine, Judith R. Stabel
Software Mentions: 5
Published: over 8 years ago

10.1093/aob/mcab090

Growth of 19 conifer species is highly sensitive to winter warming, spring frost and summer drought
Cited by: 14
Author(s): Yi Song, Ute Sass‐Klaassen, Frank J. Sterck, L. Goudzwaard, Linar Akhmetzyanov, Lourens Poorter
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pone.0204153

Overexpression of the Sorghum bicolor SbCCoAOMT alters cell wall associated hydroxycinnamoyl groups
Cited by: 18
Author(s): Hannah M. Tetreault, Erin D. Scully, Tammy Gries, Nathan A. Palmer, Deanna L. Funnell‐Harris, Lisa Baird, Javier Seravalli, Bruce S. Dien, Gautam Sarath, Thomas E. Clemente, Scott E. Sattler
Software Mentions: 5
Published: about 6 years ago

10.1186/s12859-020-03821-x

A method for estimating coherence of molecular mechanisms in major human disease and traits
Cited by: 1
Author(s): Mikhail G. Dozmorov, Kellen Garrison Cresswell, Silviu‐Alin Bacanu, Carl F. Craver, Mark Reimers, Kenneth S. Kendler
Software Mentions: 5
Published: about 4 years ago

10.3389/fcell.2021.641987

Timing Does Matter: Nerve-Mediated HDAC1 Paces the Temporal Expression of Morphogenic Genes During Axolotl Limb Regeneration
Cited by: 3
Author(s): Mu-Hui Wang, Chih‐Cheng Hsu, Cheng‐Hsun Wu, Ling-Ling Chiou, Yi-Tzang Tsai, Hsuan-Shu Lee, Shau-Ping Lin
Software Mentions: 5
Published: over 3 years ago

10.1002/ece3.5776

Mapping microhabitat thermal patterns in artificial breakwaters: Alteration of intertidal biodiversity by higher rock temperature
Cited by: 18
Author(s): Moisés A. Aguilera, Rene Matías Arias, Tatiana Manzur
Software Mentions: 5
Published: about 5 years ago

10.3390/nu7125535

A Survey of Plant Iron Content—A Semi-Systematic Review
Cited by: 21
Author(s): Robert Ancuceanu, Mihaela Dinu, Marilena Viorica Hovaneț, Adriana Iuliana Anghel, Carmen Violeta Popescu, Simona Negreș
Software Mentions: 5
Published: about 9 years ago

10.1371/journal.pone.0236037

Dissecting new genetic components of salinity tolerance in two-row spring barley at the vegetative and reproductive stages
Cited by: 19
Author(s): Stephanie Saadé, Chris Brien, Yveline Pailles, Bettina Berger, Mohammad Shahid, Joanne Russell, Robbie Waugh, Sónia Negrão, Mark Tester
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0145099

Variability of Symbiodinium Communities in Waters, Sediments, and Corals of Thermally Distinct Reef Pools in American Samoa
Cited by: 54
Author(s): Ross Cunning, Denise M. Yost, Marisa L. Guarinello, Hollie M. Putnam, Ruth D. Gates
Software Mentions: 5
Published: almost 9 years ago

10.1038/s41598-021-93003-3

A pan-cancer transcriptomic study showing tumor specific alterations in central metabolism
Cited by: 10
Author(s): Ilir Sheraj, Tülïn Güray, Sreeparna Banerjee
Software Mentions: 5
Published: over 3 years ago

10.1016/j.celrep.2021.109119

Integrated OMICs unveil the bone-marrow microenvironment in human leukemia
Cited by: 13
Author(s): Diana Passaro, Manuel Garcia-Albornoz, Giovanni Diana, Probir Chakravarty, Linda Ariza‐McNaughton, Antoniana Batsivari, Clara Borràs-Eroles, Ander Abarrategi, Alexander Waclawiczek, Luigi Ombrato, Ilaria Malanchi, John G. Gribben, Dominique Bonnet
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pone.0143122

Forecasting the Effects of Fertility Control on Overabundant Ungulates: White-Tailed Deer in the National Capital Region
Cited by: 24
Author(s): Ann Raiho, Mevin B. Hooten, Scott C. Bates, N. Thompson Hobbs
Software Mentions: 5
Published: about 9 years ago

10.1371/journal.pone.0098536

The Evolution of Morphospace in Phytophagous Scarab Chafers: No Competition - No Divergence?
Cited by: 21
Author(s): Jonas Eberle, Renier Myburgh, Dirk Ahrens
Software Mentions: 5
Published: over 10 years ago

10.1371/journal.pone.0121760

medplot: A Web Application for Dynamic Summary and Analysis of Longitudinal Medical Data Based on R
Cited by: 5
Author(s): Črt Ahlin, Daša Stupica, Franc Strle, Lara Lusa
Software Mentions: 5
Published: over 9 years ago

10.1002/ece3.707

Generalized additive mixed models for disentangling long-term trends, local anomalies, and seasonality in fruit tree phenology
Cited by: 26
Author(s): Leo Polansky, Martha M. Robbins
Software Mentions: 5
Published: over 11 years ago

10.1186/s12936-019-2744-8

Effects of anthropogenic landscape changes on the abundance and acrodendrophily of Anopheles (Kerteszia) cruzii, the main vector of malaria parasites in the Atlantic Forest in Brazil
Cited by: 26
Author(s): Antônio Ralph Medeiros‐Sousa, Rafael de Oliveira Christe, Ana Maria Ribeiro de Castro Duarte, Luís Filipe Mucci, Walter Ceretti-Júnior, Mauro Toledo Marrelli
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pgen.1006017

Comparative Genomic Analysis of Drechmeria coniospora Reveals Core and Specific Genetic Requirements for Fungal Endoparasitism of Nematodes
Cited by: 42
Author(s): Kévin Lebrigand, Le He, Nishant Thakur, Marie-Jeanne Arguel, Jolanta Polanowska, Bernard Henrissat, Éric Record, Ghislaine Magdelenat, Valérie Barbe, Sylvain Raffaele, Pascal Barbry, Jonathan J. Ewbank
Software Mentions: 5
Published: over 8 years ago

10.1186/s12983-015-0101-5

Landmark precision and reliability and accuracy of linear distances estimated by using 3D computed micro-tomography and the open-source TINA Manual Landmarking Tool software
Cited by: 8
Author(s): Monique Nouailhetas Simon, Gabriel Marroig
Software Mentions: 5
Published: over 9 years ago

10.3389/fonc.2019.01206

Exploration of the Transcriptional Landscape of ALPPS Reveals the Pathways of Accelerated Liver Regeneration
Cited by: 11
Author(s): Pieter Borger, Marcel Schneider, Lukas Frick, Magda Langiewicz, Maksim Sorokin, Anton Buzdin, Ekaterina Kachaylo, Rolf Graf, Bostjan Humar, Pierre‐Alain Clavien
Software Mentions: 5
Published: about 5 years ago

10.1186/1472-6920-13-70

Teaching and learning the Hodgkin-Huxley model based on software developed in NEURON’s programming language hoc
Cited by: 6
Author(s): Oscar E Hernández, Eduardo Zurek
Software Mentions: 4
Published: over 11 years ago

10.1371/journal.pone.0053873

Why the Long Face? The Mechanics of Mandibular Symphysis Proportions in Crocodiles
Cited by: 82
Author(s): Christopher W. Walmsley, Peter D Smits, Michelle R. Quayle, Matthew R. McCurry, Heather S. Richards, Christopher C. Oldfield, Stephen Wroe, Philip Clausen, Colin R. McHenry
Software Mentions: 4
Published: almost 12 years ago

10.3390/antibiotics6040038

Decreasing Inappropriate Use of Antibiotics in Primary Care in Four Countries in South America—Cluster Randomized Controlled Trial
Cited by: 8
Author(s): Inés Urbiztondo, Lars Bjerrum, Lidia Caballero, Marı́a Dolores Suárez, Monica Olinisky, Gloria Córdoba
Software Mentions: 4
Published: about 7 years ago

10.1098/rsos.200151

Brevity is not a universal in animal communication: evidence for compression depends on the unit of analysis in small ape vocalizations
Cited by: 16
Author(s): Dena J. Clink, Abdul Hamid Ahmad, Holger Klinck
Software Mentions: 4
Published: over 4 years ago

10.1001/jamanetworkopen.2018.4080

Association of Concomitant Use of Cholinesterase Inhibitors or Memantine With Cognitive Decline in Alzheimer Clinical Trials
Cited by: 17
Author(s): Richard E. Kennedy, Gary Cutter, Mackenzie E. Fowler, Lon S. Schneider
Software Mentions: 4
Published: about 6 years ago

10.1186/1471-2164-10-373

Computational identification of hepatitis C virus associated microRNA-mRNA regulatory modules in human livers
Cited by: 170
Author(s): Xinxia Peng, Li Yu, Kathie–Anne Walters, Elizabeth Rosenzweig, Sharon Lederer, Lauri Aicher, Sean Proll, Michael G. Katze
Software Mentions: 4
Published: over 15 years ago

10.1186/1471-2164-15-1039

Identifying structural variation in haploid microbial genomes from short-read resequencing data using breseq
Cited by: 200
Author(s): Jeffrey E. Barrick, Geoffrey Colburn, Daniel E. Deatherage, Charles C. Traverse, Matthew D Strand, Jordan J Borges, David B. Knoester, Aaron Reba, Austin G. Meyer
Software Mentions: 4
Published: almost 11 years ago

10.1371/journal.pone.0139817

Dietary Intervention for Overweight and Obese Adults: Comparison of Low-Carbohydrate and Low-Fat Diets. A Meta-Analysis
Cited by: 161
Author(s): Jonathan Sackner‐Bernstein, David Kanter, Sanjay Kaul
Software Mentions: 4
Published: about 9 years ago

10.1186/s12864-016-3218-9

Use of SNP genotypes to identify carriers of harmful recessive mutations in cattle populations
Cited by: 9
Author(s): Filippo Biscarini, Hermann Schwarzenbacher, Hubert Pausch, Ezequiel Luís Nicolazzi, Yuri Pirola, Stefano Biffani
Software Mentions: 4
Published: about 8 years ago

10.1093/gbe/evab154

Fine Mapping without Phenotyping: Identification of Selection Targets in Secondary Evolve and Resequence Experiments
Cited by: 3
Author(s): Anna Maria Langmüller, Marlies Dolezal, Christian Schlötterer
Software Mentions: 4
Published: over 3 years ago

10.3389/fnins.2021.546312

Clear and Consistent Imaging of Hippocampal Internal Architecture With High Resolution Multiple Image Co-registration and Averaging (HR-MICRA)
Cited by: 6
Author(s): Lawrence Ver Hoef, Hrishikesh Deshpande, Joel K. Curé, Goutham Selladurai, Julia Fleming Beattie, Richard E. Kennedy, Robert C. Knowlton, Jerzy P. Szaflarski
Software Mentions: 4
Published: almost 4 years ago

10.1186/1471-2164-15-910

Transcriptomic portrait of human Mesenchymal Stromal/Stem cells isolated from bone marrow and placenta
Cited by: 50
Author(s): Beatriz Rosón-Burgo, Fermín Sánchez‐Guijo, Consuelo del Cañizo, Javier De Las Rivas
Software Mentions: 4
Published: about 10 years ago

10.3389/fmicb.2012.00252

Global Biodiversity of Aquatic Ammonia-Oxidizing Archaea is Partitioned by Habitat
Cited by: 86
Author(s): Steven J. Biller, Annika C. Mosier, George F. Wells, Christopher A. Francis
Software Mentions: 4
Published: almost 13 years ago

10.3389/fmicb.2019.03155

Interacting Temperature, Nutrients and Zooplankton Grazing Control Phytoplankton Size-Abundance Relationships in Eight Swiss Lakes
Cited by: 29
Author(s): Francesco Pomati, Jonathan B. Shurin, Ken Haste Andersen, Christoph Tellenbach, Andrew D. Barton
Software Mentions: 4
Published: almost 5 years ago

10.1016/j.molcel.2018.10.018

Repression of Divergent Noncoding Transcription by a Sequence-Specific Transcription Factor
Cited by: 32
Author(s): Andrew Wu, Harshil Patel, Minghao Chia, Fabien Moretto, David Frith, Ambrosius P. Snijders, Folkert J. van Werven
Software Mentions: 4
Published: about 6 years ago

10.1002/ece3.7298

Identifying biotic drivers of population dynamics in a benthic–pelagic community
Cited by: 2
Author(s): Louise Forsblom, Andreas Lindén, Jonna Engström‐Öst, Maiju Lehtiniemi, Erik Bonsdorff
Software Mentions: 4
Published: over 3 years ago

10.3389/fnsys.2020.00046

Dorsal Column Nuclei Neural Signal Features Permit Robust Machine-Learning of Natural Tactile- and Proprioception-Dominated Stimuli
Cited by: 2
Author(s): Alastair J. Loutit, Jason R. Potas
Software Mentions: 4
Published: over 4 years ago

Projects: pypi: environment

Papers Mentioning environment 569