Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.ppat.1008057

https://doi.org/10.1371/journal.ppat.1008057

Astrovirus replication in human intestinal enteroids reveals multi-cellular tropism and an intricate host innate immune landscape

Cited by: 65
Author(s): Abimbola O. Kolawole, Carmen Mirabelli, David R. Hill, Sophia A. Svoboda, Andrew B. Janowski, Karla D. Passalacqua, Benancio N. Rodriguez, Michael K. Dame, Pamela Freiden, Ryan P. Berger, Diem Vu, Myra Hosmillo, Mary X. O’Riordan, Stacey Schultz‐Cherry, Susana Guix, Jason R. Spence, David Wang, Christiane E. Wobus
Published: about 5 years ago

Software Mentions 5

bioconductor: clusterProfiler
A universal enrichment tool for interpreting omics data
Papers that mentioned: 2,223
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: ReactomePA
Reactome Pathway Analysis
Papers that mentioned: 171
pypi: environment
This library provides parsing and validation of environment variables.
Papers that mentioned: 569
pypi: kallisto
The Kallisto software enables the efficient calculation of atomic features that can be used within a quantitative structure-activity relationship (QSAR) approach. Furthermore, several modelling helpers are implemented.
Papers that mentioned: 307