An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Papers: 10.1186/s13059-020-02114-z

https://doi.org/10.1186/s13059-020-02114-z

Genome-wide identification of genes regulating DNA methylation using genetic anchors for causal inference

Cited by: 22
Author(s): Paul J. Hop, René Luijk, Lucia Daxinger, Maarten van Iterson, Koen F. Dekkers, Rick Jansen, Bastiaan T. Heijmans, Peter A.C. ’t Hoen, Joyce van Meurs, Rick Jansen, Lude Franke, Dorret I. Boomsma, René Pool, Jenny van Dongen, Jouke Jan Hottenga, Marleen M.J. van Greevenbroek, Coen D.A. Stehouwer, Carla J.H. van der Kallen, Casper G. Schalkwijk, Cisca Wijmenga, Sasha Zhernakova, Ettje F. Tigchelaar, P. Eline Slagboom, Marian Beekman, Joris Deelen, Diana van Heemst, Jan H. Veldink, Leonard H. van den Berg, Cornelia M. van Duijn, Aaron Isaacs, André G. Uitterlinden, P. Mila Jhamai, Michaël Verbiest, H. Eka D. Suchiman, Marijn Verkerk, Ruud van der Breggen, Jeroen van Rooij, Nico Lakenberg, Hailiang Mei, Maarten van Iterson, Dasha V. Zhernakova, Peter van ’t Hof, Patrick Deelen, Peter A.C. ’t Hoen, Martijn Vermaat, René Luijk, Marc Jan Bonder, Freerk van Dijk, Wibowo Arindrarto, Szymon M. Kiełbasa, Erik W. van Zwet, Peter-Bram ’t Hoen, Joyce B. J. van Meurs, Peter A.C. ’t Hoen, M. Arfan Ikram, Marleen M.J. van Greevenbroek, Dorret I. Boomsma, P. Eline Slagboom, Jan H. Veldink, Erik W. van Zwet, Bastiaan T. Heijmans
Published: almost 5 years ago

Software Mentions 8

bioconductor: GenomicRanges
Representation and manipulation of genomic intervals
Papers that mentioned: 323
Very Likely Science (90)
bioconductor: MethylAid
Visual and interactive quality control of large Illumina DNA Methylation array data sets
Papers that mentioned: 28
Very Likely Science (100)
bioconductor: minfi
Analyze Illumina Infinium DNA methylation arrays
Papers that mentioned: 506
Very Likely Science (100)
bioconductor: omicsPrint
Cross omic genetic fingerprinting
Papers that mentioned: 5
Very Likely Science (75)
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
Very Likely Science (100)
pypi: cutadapt
Adapter trimming and other preprocessing of high-throughput sequencing reads
Papers that mentioned: 1,562
Very Likely Science (100)
pypi: MACS2
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,203
Very Likely Science (100)
pypi: Sickle
A lightweight OAI client library for Python
Papers that mentioned: 740
Very Likely Science (100)