Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: GWASTools
https://packages.ecosyste.ms/registries/bioconductor.org/packages/GWASTools
Tools for Genome Wide Association Studies
1 version
Latest release: 12 months ago
4 dependent packages
87,487 downloads total
Papers Mentioning GWASTools 17
10.1371/journal.pcbi.1008880
Orchestrating privacy-protected big data analyses of data from different resources with R and DataSHIELDCited by: 20
Author(s): Yannick Marcon, Tom Bishop, Demetris Avraam, Xavier Escribà-Montagut, Patricia Ryser-Welch, SM Wheater, Paul R. Burton, Juan R. González
Software Mentions: 13
Published: over 3 years ago
10.1093/bioinformatics/bty713
Bigmelon: tools for analysing large DNA methylation datasetsCited by: 47
Author(s): T.J. Gorrie-Stone, Melissa Smart, Ayden Saffari, Karim Malki, Eilís Hannon, Joe Burrage, Jonathan Mill, Meena Kumari, Leonard C Schalkwyk
Software Mentions: 13
Published: about 6 years ago
10.3389/fgene.2020.00936
NRG1, PIP4K2A, and HTR2C as Potential Candidate Biomarker Genes for Several Clinical Subphenotypes of Depression and Bipolar DisorderCited by: 13
Author(s): Аnastasia Levchenko, N. Vyalova, Timur Nurgaliev, Ivan V Pozhidaev, German G. Simutkin, Н. А. Бохан, Светлана Иванова
Software Mentions: 7
Published: about 4 years ago
10.1534/g3.118.200129
Genome-Wide Association Mapping Uncovers <i>Fw1</i>, a Dominant Gene Conferring Resistance to Fusarium Wilt in StrawberryCited by: 40
Author(s): Dominique D A Pincot, Thomas J. Poorten, Michael A. Hardigan, Julia M. Harshman, Charlotte B. Acharya, Glenn Cole, Thomas R. Gordon, Michelle Stueven, Patrick P. Edger, Steven J. Knapp
Software Mentions: 6
Published: over 6 years ago
10.1186/s13059-020-1942-6
A framework for transcriptome-wide association studies in breast cancer in diverse study populationsCited by: 60
Author(s): Arjun Bhattacharya, Montserrat García‐Closas, Andrew F. Olshan, Charles M. Perou, Melissa A. Troester, Michael I. Love
Software Mentions: 6
Published: over 4 years ago
10.1186/1751-0473-8-5
CrypticIBDcheck: an R package for checking cryptic relatedness in nominally unrelated individualsCited by: 7
Author(s): Annick Nembot-Simo, Jinko Graham, Brad McNeney
Software Mentions: 5
Published: over 11 years ago
10.1016/j.gpb.2018.07.006
SeqSQC: A Bioconductor Package for Evaluating the Sample Quality of Next-generation Sequencing DataCited by: 6
Author(s): Qian Liu, Qiang Hu, Song Yao, Marilyn L. Kwan, Janise M. Roh, Hua Zhao, Christine B. Ambrosone, Lawrence H. Kushi, Song Liu, Qianqian Zhu
Software Mentions: 5
Published: over 5 years ago
10.1038/s41416-018-0141-7
Rare germline variants in DNA repair genes and the angiogenesis pathway predispose prostate cancer patients to develop metastatic diseaseCited by: 36
Author(s): Martina Mijušković, Ed Saunders, Daniel Leongamornlert, Sarah Wakerell, Ian Whitmore, Tokhir Dadaev, Clara Cieza-Borrella, Koveela Govindasami, Mark N. Brook, Christopher A. Haiman, David V. Conti, Rosalind Eeles, Zsofia Kote‐Jarai
Software Mentions: 5
Published: over 6 years ago
10.1186/1471-2156-15-24
A genome-wide study of de novo deletions identifies a candidate locus for non-syndromic isolated cleft lip/palate riskCited by: 21
Author(s): Samuel G. Younkin, Robert B. Scharpf, Holger Schwender, Margaret M. Parker, Alan F. Scott, Mary L. Marazita, Terri H. Beaty, Ingo Ruczinski
Software Mentions: 4
Published: almost 11 years ago
10.1371/journal.pone.0059823
Confirmation of the Reported Association of Clonal Chromosomal Mosaicism with an Increased Risk of Incident Hematologic CancerCited by: 25
Author(s): Ursula M. Schick, Andrew McDavid, Paul K. Crane, Noah Weston, Kelly Ehrlich, Katherine M. Newton, Robert B. Wallace, Ebony Bookman, Tabitha A. Harrison, Aaron K. Aragaki, David R. Crosslin, Sophia Wang, Alex P. Reiner, Rebecca D. Jackson, Ulrike Peters, Eric B. Larson, Gail P. Jarvik, Christopher S. Carlson
Software Mentions: 4
Published: over 11 years ago
10.1016/j.celrep.2020.03.053
Whole-Genome and RNA Sequencing Reveal Variation and Transcriptomic Coordination in the Developing Human Prefrontal CortexCited by: 82
Author(s): Donna M. Werling, Sirisha Pochareddy, Jinmyung Choi, Joon Yong An, Brooke Sheppard, Minshi Peng, Zhen Li, Claudia Dastmalchi, Gabriel Santpere, André M. M. Sousa, Andrew T.N. Tebbenkamp, Navjot Kaur, Forrest O. Gulden, Michael S. Breen, Lindsay Liang, Michael C. Gilson, Xuefang Zhao, Shan Dong, Lambertus Klei, A. Ercüment Çiçek, Joseph D. Buxbaum, Homa Adle‐Biassette, Jean Léon Thomas, Kimberly A. Aldinger, Diana R. O’Day, Ian A. Glass, Noah Zaitlen, Michael E. Talkowski, Kathryn Roeder, Matthew W. State, Bernie Devlin, Stephan J. Sanders, Nenad Šestan
Software Mentions: 4
Published: over 4 years ago
10.7554/eLife.41038
Drought adaptation in Arabidopsis thaliana by extensive genetic loss-of-functionCited by: 59
Author(s): J. Grey Monroe, Tyler Powell, Nicholas C. Price, Jack L. Mullen, Angela Howard, Kyle Evans, John T Lovell, John McKay
Software Mentions: 3
Published: almost 6 years ago
10.1371/journal.pbio.2002458
Identifying genetic variants that affect viability in large cohortsCited by: 65
Author(s): Hakhamanesh Mostafavi, Tomaz Berisa, Felix R. Day, John R. B. Perry, Molly Przeworski, Joseph K. Pickrell
Software Mentions: 3
Published: about 7 years ago
10.3389/fgene.2019.00675
Scanning of Genetic Variants and Genetic Mapping of Phenotypic Traits in Gilthead Sea Bream Through ddRAD SequencingCited by: 12
Author(s): Dimitrios Kyriakis, Alexandros Kanterakis, Tereza Manousaki, Alexandros Tsakogiannis, Michalis Tsagris, Ioannis Tsamardinos, Leonidas Papaharisis, Dimitrios Chatziplis, George Potamias, Costas S. Tsigenopoulos
Software Mentions: 3
Published: about 5 years ago
10.1016/j.cgh.2018.03.007
Interactions Between Genetic Variants and Environmental Factors Affect Risk of Esophageal Adenocarcinoma and Barrett’s EsophagusCited by: 15
Author(s): Jingjing Dong, David Levine, Matthew F. Buas, Rui Zhang, Lynn Onstad, Rebecca C. Fitzgerald, Douglas A. Corley, Nicholas J. Shaheen, Jesper Lagergren, Laura J. Hardie, Brian J. Reid, Prasad G. Iyer, Harvey A. Risch, Carlos Caldas, Isabel Caldas, Paul D.P. Pharoah, Geoffrey Liu, Marilie D. Gammon, Wong Ho Chow, Leslie Bernstein, Nigel C. Bird, Weimin Ye, Anna H. Wu, Lesley A. Anderson, Stuart MacGregor, David C. Whiteman, Thomas L. Vaughan, Aaron P. Thrift
Software Mentions: 1
Published: about 6 years ago
10.1155/2020/8640719
Genetic Association and Expression Correlation between Colony-Stimulating Factor 1 Gene Encoding M-CSF and Adult-Onset Still’s DiseaseCited by: 5
Author(s): Yiming Chen, Wei‐Ting Hung, Wen Han Chang, Chia‐Wei Hsieh, Yi‐Teng Hung, Joung‐Liang Lan, Ning‐Rong Gung, Yun‐Shien Lee, Der‐Yuan Chen, Shuen‐Iu Hung
Software Mentions: 1
Published: over 4 years ago
10.1155/2017/7375468
A Preliminary Genome-Wide Association Study of Pain-Related Fear: Implications for Orofacial PainCited by: 18
Author(s): Cameron L. Randall, Casey D. Wright, Jonathan M. Chernus, Daniel W. McNeil, Eleanor Feingold, Richard J. Crout, Katherine Neiswanger, Robert J. Weyant, John R. Shaffer, Mary L. Marazita
Software Mentions: 1
Published: almost 8 years ago