bioconductor: methylumi | Projects

10.1186/s13059-021-02388-x

Gene set enrichment analysis for genome-wide DNA methylation data
Cited by: 61
Author(s): Jovana Maksimovic, Alicia Oshlack, Belinda Phipson
Software Mentions: 16
Published: over 3 years ago

Bigmelon: tools for analysing large DNA methylation datasets
Cited by: 47
Author(s): T.J. Gorrie-Stone, Melissa Smart, Ayden Saffari, Karim Malki, Eilís Hannon, Joe Burrage, Jonathan Mill, Meena Kumari, Leonard C Schalkwyk
Software Mentions: 13
Published: about 6 years ago

10.12688/f1000research.8839.3

A cross-package Bioconductor workflow for analysing methylation array data
Cited by: 80
Author(s): Jovana Maksimovic, Belinda Phipson, Alicia Oshlack
Software Mentions: 12
Published: over 7 years ago

10.1186/1756-0500-4-546

HumMeth27QCReport: an R package for quality control and primary analysis of Illumina Infinium methylation data
Cited by: 20
Author(s): Francesco Mancuso, Magda Montfort, Anna Carreras, Andreu Alibés, Guglielmo Roma
Software Mentions: 11
Published: almost 13 years ago

10.3390/ijms21145044

Epigenome Wide Association and Stochastic Epigenetic Mutation Analysis on Cord Blood of Preterm Birth
Cited by: 10
Author(s): Elena Spada, Luciano Calzari, Luigi Corsaro, Teresa Fazia, Monica Mencarelli, Anna Maria Di Blasio, Luisa Bernardinelli, G. Zangheri, Michele Vignali, Davide Gentilini
Software Mentions: 9
Published: over 4 years ago

10.12688/f1000research.2-264.v1

illuminaio: An open source IDAT parsing tool for Illumina microarrays
Cited by: 59
Author(s): Mike L. Smith, Keith A. Baggerly, Henrik Bengtsson, Matthew E. Ritchie, Kasper D. Hansen
Software Mentions: 9
Published: almost 11 years ago

10.1371/journal.pone.0159921

BEclear: Batch Effect Detection and Adjustment in DNA Methylation Data
Cited by: 19
Author(s): Ruslan Akulenko, Markus Merl, Volkhard Helms
Software Mentions: 8
Published: about 8 years ago

10.1186/s13059-019-1664-9

RnBeads 2.0: comprehensive analysis of DNA methylation data
Cited by: 188
Author(s): Fabian Müller, Michael Scherer, Yassen Assenov, Pavlo Lutsik, Jörn Walter, Thomas Lengauer, Christoph Bock
Software Mentions: 8
Published: over 5 years ago

10.1186/s13148-018-0510-3

Multifactorial analysis of the stochastic epigenetic variability in cord blood confirmed an impact of common behavioral and environmental factors but not of in vitro conception
Cited by: 25
Author(s): Davide Gentilini, Edgardo Somigliana, Luca Pagliardini, Elisa Rabellotti, Paolo Garagnani, Luisa Bernardinelli, Enrico Papaleo, Massimo Candiani, Anna Maria Di Blasio, Paola Viganò
Software Mentions: 7
Published: over 6 years ago

10.12688/f1000research.4680.2

shinyMethyl: interactive quality control of Illumina 450k DNA methylation arrays in R
Cited by: 96
Author(s): Jean Philippe Fortin, Elana J. Fertig, Kasper D. Hansen
Software Mentions: 6
Published: about 10 years ago

10.1186/s13059-015-0741-y

Reconstructing A/B compartments as revealed by Hi-C using long-range correlations in epigenetic data
Cited by: 222
Author(s): Jean Philippe Fortin, Kasper D. Hansen
Software Mentions: 6
Published: about 9 years ago

10.1186/s13059-014-0483-2

Methylomic profiling of human brain tissue supports a neurodevelopmental origin for schizophrenia
Cited by: 140
Author(s): Ruth Pidsley, Joana Viana, Eilís Hannon, Helen Spiers, Claire Troakes, Safa Al-Saraj, Naguib Mechawar, Gustavo Turecki, Leonard C. Schalkwyk, Nicholas John Bray, Jonathan Mill
Software Mentions: 6
Published: about 10 years ago

10.1186/s13059-014-0503-2

Functional normalization of 450k methylation array data improves replication in large cancer studies
Cited by: 640
Author(s): Jean Philippe Fortin, Aurélie Labbe, Mathieu Lemire, Brent W. Zanke, Thomas J. Hudson, Elana J. Fertig, Celia M.T. Greenwood, Kasper D. Hansen
Software Mentions: 6
Published: about 10 years ago

10.1186/s13148-015-0097-x

DNA methylation levels are highly correlated between pooled samples and averaged values when analysed using the Infinium HumanMethylation450 BeadChip array
Cited by: 15
Author(s): Cristina Gallego-Fábrega, Caty Carrera, Elena Muiño, Joan Montaner, Jurek Krupinski, Israel Fernández-Cadenas
Software Mentions: 6
Published: over 9 years ago

10.1186/s13148-016-0241-2

Comparison of pre-processing methodologies for Illumina 450k methylation array data in familial analyses
Cited by: 11
Author(s): Emma Cazaly, Russell Thomson, James R. Marthick, Adele F. Holloway, Jac Charlesworth, Joanne L. Dickinson
Software Mentions: 6
Published: over 8 years ago

10.1186/s12931-016-0459-8

Differential DNA methylation marks and gene comethylation of COPD in African-Americans with COPD exacerbations
Cited by: 47
Author(s): Robert S. Busch, Weiliang Qiu, Jessica Lasky‐Su, Jarrett Morrow, Gerard J. Criner, Dawn L. DeMeo
Software Mentions: 6
Published: about 8 years ago

10.1186/s12864-019-5553-0

Comparing DNA methylation profiles in saliva and intestinal mucosa
Cited by: 13
Author(s): Nerissa L. Hearn, Aaron S. Coleman, Vincent Ho, Christine L Chiu, Joanne M. Lind
Software Mentions: 6
Published: over 5 years ago

10.18632/oncotarget.17462

Epigenome-wide association study in hepatocellular carcinoma: Identification of stochastic epigenetic mutations through an innovative statistical approach
Cited by: 43
Author(s): Davide Gentilini, Stefania Scala, Germano Gaudenzi, Paolo Garagnani, Miriam Capri, Matteo Cescon, Gian Luca Grazi, Maria Giulia Bacalini, Serena Pisoni, Alessandra Dicitore, Luisa Circelli, Sara Santagata, Francesco Izzo, Anna Maria Di Blasio, Luca Persani, Claudio Franceschi, Giovanna Mantovani
Software Mentions: 5
Published: over 7 years ago

10.1093/gigascience/giaa049

Ewastools: Infinium Human Methylation BeadChip pipeline for population epigenetics integrated into Galaxy
Cited by: 11
Author(s): Katarzyna Murat, Björn Grüning, Paulina Wiktoria Poterlowicz, Gillian Westgate, Desmond J. Tobin, Krzysztof Poterlowicz
Software Mentions: 5
Published: over 4 years ago

10.1186/s12918-018-0671-x

Multi-omics integration reveals molecular networks and regulators of psoriasis
Cited by: 35
Author(s): Yuqi Zhao, Deepali Jhamb, Le Shu, Douglas Arneson, Deepak K. Rajpal, Xia Yang
Software Mentions: 5
Published: almost 6 years ago

10.1186/1471-2164-14-293

A data-driven approach to preprocessing Illumina 450K methylation array data
Cited by: 805
Author(s): Ruth Pidsley, Chloe Wong, Manuela Volta, Katie Lunnon, Jonathan Mill, Leonard C. Schalkwyk
Software Mentions: 5
Published: over 11 years ago

10.1186/s12920-020-0670-9

Comparison of DNA methylation profiles from saliva in Coeliac disease and non-coeliac disease individuals
Cited by: 9
Author(s): Nerissa L. Hearn, Christine L Chiu, Joanne M. Lind
Software Mentions: 5
Published: almost 5 years ago

10.1002/1878-0261.12070

Synergistic activity of everolimus and 5-aza-2′-deoxycytidine in medullary thyroid carcinoma cell lines
Cited by: 23
Author(s): Giovanna Mantovani, Alessandra Dicitore, Daniele Pepe, Davide Gentilini, Elisa Grassi, Maria Orietta Borghi, Giulia Gelmini, Maria Celeste Cantone, Germano Gaudenzi, Gabriella Misso, Anna Maria Di Blasio, Leo J. Hofland, Michele Caraglia, Luca Persani
Software Mentions: 5
Published: over 7 years ago

10.1371/journal.pgen.1009443

Assessing the co-variability of DNA methylation across peripheral cells and tissues: Implications for the interpretation of findings in epigenetic epidemiology
Cited by: 27
Author(s): Eilís Hannon, Georgina Mansell, Emma Walker, Marta F. Nabais, Joe Burrage, Agnieszka Kepa, Janis Best-Lane, Anna Rose, Suzanne Heck, Terrie E. Moffitt, Avshalom Caspi, Louise Arseneault, Jonathan Mill
Software Mentions: 5
Published: over 3 years ago

10.1186/s12864-016-2819-7

An evaluation of processing methods for HumanMethylation450 BeadChip data
Cited by: 52
Author(s): Jie Liu, Kimberly D. Siegmund
Software Mentions: 5
Published: over 8 years ago

10.1371/journal.pone.0044736

Brain Transcriptional and Epigenetic Associations with Autism
Cited by: 131
Author(s): Matthew R. Ginsberg, Robert A. Rubin, Tatiana Falcone, Angela H. Ting, Marvin R. Natowicz
Software Mentions: 5
Published: about 12 years ago

10.1186/s13148-018-0530-z

Genome-wide methylomic analysis in individuals with HNF1B intragenic mutation and 17q12 microdeletion
Cited by: 18
Author(s): Rhian L Clissold, Beth Ashfield, Joe Burrage, Eilís Hannon, Coralie Bingham, Jonathan Mill, Andrew T. Hattersley, Emma Dempster
Software Mentions: 4
Published: over 6 years ago

10.4161/epi.27806

Epigenomic and transcriptomic signatures of a Klinefelter syndrome (47,XXY) karyotype in the brain
Cited by: 41
Author(s): Joana Viana, Ruth Pidsley, Claire Troakes, Helen Spiers, Chloe Wong, Safa Al‐Sarraj, Ian W. Craig, Leonard C. Schalkwyk, Jonathan Mill
Software Mentions: 4
Published: almost 11 years ago

10.1093/cdn/nzaa097

Nutritional Epigenomics and Age-Related Disease
Cited by: 18
Author(s): Sophia Amenyah, Mary Ward, James J. Strain, Helene McNulty, Catherine F Hughes, Caitlin Dollin, Colum P. Walsh, Diane J. Lees-Murdock
Software Mentions: 4
Published: over 4 years ago

10.18632/oncotarget.15807

Comprehensive mapping of the effects of azacitidine on DNA methylation, repressive/permissive histone marks and gene expression in primary cells from patients with MDS and MDS-related disease
Cited by: 39
Author(s): Magnus Tobiasson, Hani Abdulkadir, Andreas Lennartsson, Shintaro Katayama, Francesco Marabita, Annick De Paepe, Mohsen Karimi, Kaarel Krjutškov, Elisabet Einarsdottir, Michael Grövdal, Monika Jansson, Asmaa Ben Azenkoud, Lina Corddedu, Sören Lehmann, Karl Ekwall, Juha Kere, Eva Hellström‐Lindberg, Johanna Ungerstedt
Software Mentions: 4
Published: over 7 years ago

10.1186/s13058-018-0933-y

HER2 is not a cancer subtype but rather a pan-cancer event and is highly enriched in AR-driven breast tumors
Cited by: 44
Author(s): Anneleen Daemen, Gerard Manning
Software Mentions: 4
Published: almost 7 years ago

10.1371/journal.pone.0057886

Integrative Genome-Wide Gene Expression Profiling of Clear Cell Renal Cell Carcinoma in Czech Republic and in the United States
Cited by: 94
Author(s): Magdalena B. Wozniak, Florence Le Calvez-Kelm, Behnoush Abedi-Ardekani, Graham Byrnes, G. Durand, Christine Carreira, Jocelyne Michelon, Vladimír Janout, Ivana Holcátová, Lenka Foretová, A. Brisuda, Fabienne Lesueur, James McKay, Paul Brennan, Ghislaine Scélo
Software Mentions: 4
Published: over 11 years ago

10.7554/eLife.58430

DNA methylation meta-analysis reveals cellular alterations in psychosis and markers of treatment-resistant schizophrenia
Cited by: 62
Author(s): Eilís Hannon, Emma Dempster, Georgina Mansell, Joe Burrage, Nick Bass, Marc M. Bohlken, Aiden Corvin, Charles Curtis, David Dempster, Marta Di Forti, Timothy G. Dinan, Gary Donohoe, Fiona Gaughran, Michael Gill, Amy Gillespie, Cerisse Gunasinghe, Hilleke E Hulshoff, Christina M. Hultman, Viktoria Johansson, René S. Kahn, Jaakko Kaprio, Günter Kenis, Kaarina Kowalec, James H. MacCabe, Colm McDonald, Andrew McQuillin, Derek W. Morris, Kieran C. Murphy, Colette J Mustard, Igor Nenadić, Michael O’Donovan, Diego Quattrone, Alexander Richards, Bart P. F. Rutten, David St Clair, Sebastian Therman, Timothea Toulopoulou, Jim van Os, John L. Waddington, Patrick F. Sullivan, Evangelos Vassos, Gerome Breen, David A. Collier, Robin M. Murray, Leonard Schalkwyk, Jonathan Mill
Software Mentions: 4
Published: over 3 years ago

10.1038/s41598-019-46930-1

Distinct epigenetic profiles in children with perinatally-acquired HIV on antiretroviral therapy
Cited by: 17
Author(s): Stephanie Shiau, Renate Strehlau, Shuang Wang, Avy Violari, Catherine Do, Faeezah Patel, Afaaf Liberty, Izabela Krupska, Stephen M. Arpadi, Marc Foca, Ashraf Coovadia, Elaine J. Abrams, Benjamin Tycko, Mary Beth Terry, Louise Kuhn
Software Mentions: 4
Published: over 5 years ago

10.1186/s13148-019-0791-1

DNA methylation instability by BRAF-mediated TET silencing and lifestyle-exposure divides colon cancer pathways
Cited by: 21
Author(s): Faiza Noreen, Taya Küng, Luigi Tornillo, Helen L. Parker, Miguel G. Silva, Stefan Weis, Giancarlo Marra, Roland Rad, Kaspar Truninger, Primo Schär
Software Mentions: 4
Published: almost 5 years ago

10.1186/1471-2164-13-619

Molecular characterisation of cell line models for triple-negative breast cancers
Cited by: 63
Author(s): Anita Grigoriadis, Alan Mackay, Elodie Noël, Pei Jun Wu, Rachael Natrajan, Jessica Frankum, Jorge S. Reis‐Filho, Andrew Tutt
Software Mentions: 4
Published: almost 13 years ago

10.3389/fgene.2012.00161

Identification of DNA methylation biomarkers from Infinium arrays
Cited by: 33
Author(s): Frank Wessely, Richard D. Emes
Software Mentions: 4
Published: almost 13 years ago

10.1186/1479-5876-10-185

Whole genome methylation profiles as independent markers of survival in stage IIIC melanoma patients
Cited by: 49
Author(s): Luca Sigalotti, Alessia Covre, Elisabetta Fratta, Giulia Parisi, Paolo Sonego, Francesca Colizzi, Sandra Coral, Samuele Massarut, John M. Kirkwood, Michele Maio
Software Mentions: 4
Published: about 12 years ago

10.1093/hmg/ddz052

Genome-wide DNA methylation profiling identifies convergent molecular signatures associated with idiopathic and syndromic autism in post-mortem human brain tissue
Cited by: 62
Author(s): Chloe Wong, Rebecca G. Smith, Eilís Hannon, Gokul Ramaswami, Neelroop N. Parikshak, Elham Assary, Claire Troakes, Jérémie Poschmann, Leonard C Schalkwyk, Wenjie Sun, Shyam Prabhakar, Daniel H. Geschwind, Jonathan Mill
Software Mentions: 3
Published: over 5 years ago

10.1186/s12864-016-3426-3

RELIC: a novel dye-bias correction method for Illumina Methylation BeadChip
Cited by: 89
Author(s): Zongli Xu, Sabine A. S. Langie, Patrick De Boever, Jack A. Taylor, Liang Niu
Software Mentions: 3
Published: almost 8 years ago

10.1371/journal.pgen.1007544

Characterizing genetic and environmental influences on variable DNA methylation using monozygotic and dizygotic twins
Cited by: 143
Author(s): Eilís Hannon, Olivia Knox, Karen Sugden, Joe Burrage, Chloe Wong, Daniel W. Belsky, David L. Corcoran, Louise Arseneault, Terrie E. Moffitt, Avshalom Caspi, Jonathan Mill
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0165548

Are Epigenetic Factors Implicated in Chronic Widespread Pain?
Cited by: 17
Author(s): Andrea Burri, Zoya Marinova, Mark D. Robinson, Brigitte Kühnel, Mélanie Waldenberger, Simone Wahl, Sonja Kunze, Christian Gieger, Gregory Livshits, Frances Williams
Software Mentions: 3
Published: almost 8 years ago

10.1186/s13148-015-0073-5

Genome-wide blood DNA methylation alterations at regulatory elements and heterochromatic regions in monozygotic twins discordant for obesity and liver fat
Cited by: 66
Author(s): Miina Ollikainen, Khadeeja Ismail, Kristina Gervin, Anjuska Kyllönen, Antti Hakkarainen, Jesper Lundbom, Elina Järvinen, Jennifer R. Harris, Nina Lundbom, Aila Rissanen, Robert Lyle, Kirsi H. Pietiläinen, Jaakko Kaprio
Software Mentions: 3
Published: over 9 years ago

10.1186/s13148-020-00864-y

Harnessing peripheral DNA methylation differences in the Alzheimer’s Disease Neuroimaging Initiative (ADNI) to reveal novel biomarkers of disease
Cited by: 48
Author(s): Aparna Vasanthakumar, J. Wade Davis, Kenneth B. Idler, Jeffrey F. Waring, Elizabeth Asque, Bridget Riley-Gillis, Shaun Grosskurth, Gyan Srivastava, Sungeun Kim, Kwangsik Nho, Kelly Nudelman, Kelley Faber, Yu Sun, Tatiana Foroud, Karol Estrada, Liana G. Apostolova, Qingqin Li, Andrew J. Saykin
Software Mentions: 3
Published: over 4 years ago

10.1093/eep/dvx006

Cadmium exposure and age-associated DNA methylation changes in non-smoking women from northern Thailand
Cited by: 13
Author(s): Kathryn Demanelis, Shama Virani, Justin A. Colacino, Niladri Basu, Muneko Nishijo, Werawan Ruangyuttikarn, Witaya Swaddiwudhipong, Kowit Nambunmee, Laura S. Rozek
Software Mentions: 3
Published: over 7 years ago

10.3389/fcell.2021.647981

Characterization of DNA Methylomic Signatures in Induced Pluripotent Stem Cells During Neuronal Differentiation
Cited by: 5
Author(s): Jennifer Imm, Ehsan Pishva, Muhammadd Ali, Talitha L Kerrigan, Aaron R. Jeffries, Joe Burrage, Enrico Glaab, Emma L Cope, Kimberley M Jones, Nicholas Denby Allen, Katie Lunnon
Software Mentions: 3
Published: over 3 years ago

10.3389/fgene.2019.01050

Maternal Intake of n-3 Polyunsaturated Fatty Acids During Pregnancy Is Associated With Differential Methylation Profiles in Cord Blood White Cells
Cited by: 16
Author(s): Marzia Bianchi, Anna Alisi, Marta Fabrizi, Cristina Vallone, Lucilla Ravà, Riccardo Giannico, Pamela Vernocchi, Fabrizio Signore, Melania Manco
Software Mentions: 3
Published: about 5 years ago

10.3389/fgene.2019.00907

Epigenetic Delay in the Neurodevelopmental Trajectory of DNA Methylation States in Autism Spectrum Disorders
Cited by: 28
Author(s): Michael J. Corley, Naurú Idalia Vargas-Maya, Alina P.S. Pang, Annette Lum-Jones, Dongmei Li, Vedbar S. Khadka, Răzvan Sultana, D. Caroline Blanchard, Alika K. Maunakea
Software Mentions: 3
Published: about 5 years ago

10.3389/fgene.2014.00354

Stratified randomization controls better for batch effects in 450K methylation analysis: a cautionary tale
Cited by: 40
Author(s): Olive D. Buhule, Ryan L. Minster, Nicola L. Hawley, Mario Medvedovic, Guoqiang Sun, Satupaitea Viali, Ranjan Deka, Stephen T. McGarvey, Daniel E. Weeks
Software Mentions: 3
Published: about 10 years ago

10.1210/jc.2017-00881

Prognostic Classifier Based on Genome-Wide DNA Methylation Profiling in Well-Differentiated Thyroid Tumors
Cited by: 42
Author(s): Mariana Bisarro dos Reis, Mateus Camargo Barros-Filho, Fábio Albuquerque Marchi, Caroline Moraes Beltrami, Hellen Kuasne, Clóvis Antônio Lopes Pinto, Srikant Ambatipudi, Zdenko Herceg, Luiz Paulo Kowalski, Sílvia Regina Rogatto
Software Mentions: 3
Published: about 7 years ago

10.1093/hmg/ddw373

Schizophrenia-associated methylomic variation: molecular signatures of disease and polygenic risk burden across multiple brain regions
Cited by: 48
Author(s): Joana Viana, Eilís Hannon, Emma Dempster, Ruth Pidsley, Robert C. MacDonald, Olivia Knox, Helen Spiers, Claire Troakes, Safa Al-Saraj, Gustavo Turecki, Leonard C Schalkwyk, Jonathan Mill
Software Mentions: 3
Published: almost 8 years ago

10.3389/fnins.2020.555307

Characteristics of Epigenetic Clocks Across Blood and Brain Tissue in Older Women and Men
Cited by: 29
Author(s): Francine Grodstein, Bernardo Lemos, Lei Yu, Artemis Iatrou, Philip L. De Jager, David A. Bennett
Software Mentions: 2
Published: almost 4 years ago

10.1186/1471-2105-15-199

Non-specific filtering of beta-distributed data
Cited by: 15
Author(s): Xinhui Wang, Peter W. Laird, Toshinori Hinoue, Susan Groshen, Kimberly D. Siegmund
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0108087

Genome-Wide Investigation of DNA Methylation Marks Associated with FV Leiden Mutation
Cited by: 7
Author(s): Dylan Aïssi, Jessica Dennis, Martin Ladouceur, Vinh Truong, Nora Zwingerman, Ares Rocañín-Arjó, Marine Germain, Tara Paton, Pierre‐Emmanuel Morange, David‐Alexandre Trégouët
Software Mentions: 2
Published: about 10 years ago

10.7554/eLife.54870

Quantification of the pace of biological aging in humans through a blood test, the DunedinPoAm DNA methylation algorithm
Cited by: 228
Author(s): Daniel W. Belsky, Avshalom Caspi, Louise Arseneault, Andrea A. Baccarelli, David L. Corcoran, Xu Gao, Eilís Hannon, Hona Lee Harrington, Line Jee Hartmann Rasmussen, Renate Houts, Kim M. Huffman, William E. Kraus, Dayoon Kwon, Jonathan Mill, Carl F. Pieper, Joseph A. Prinz, Richie Poulton, Joel Schwartz, Karen Sugden, Pantel Vokonas, Benjamin Williams, Terrie E. Moffitt
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0174783

Methylomic changes in individuals with psychosis, prenatally exposed to endocrine disrupting compounds: Lessons from diethylstilbestrol
Cited by: 16
Author(s): Fabrice Rivollier, Boris Chaumette, Narjes Bendjemaa, M. Chayet, Bruno Millet, Nématollah Jaafari, Amina Barhdadi, Louis‐Philippe Lemieux Perreault, Sylvie Provost, Marie‐Pierre Dubé, R. Gaillard, Marie‐Odile Krebs, Oussama Kébir
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0184900

Methylation associated transcriptional repression of ELOVL5 in novel colorectal cancer cell lines
Cited by: 10
Author(s): Arnoud Boot, Jan Oosting, Jaap D. H. van Eendenburg, Peter J.K. Kuppen, Hans Morreau, Tom van Wezel
Software Mentions: 2
Published: about 7 years ago

10.3390/biomedicines8070181

Identification of Differentially Methylated CpG Sites in Fibroblasts from Keloid Scars
Cited by: 11
Author(s): Mansour A. Alghamdi, Hilary Wallace, Phillip E. Melton, Eric K. Moses, Andrew Stevenson, Laith N. AL-Eitan, Suzanne Rea, Janine M. Duke, Patricia L Danielsen, Cecilia M. Prêle, Fiona Wood, Mark W. Fear
Software Mentions: 2
Published: over 4 years ago

10.1186/s13059-016-0871-x

Variation in 5-hydroxymethylcytosine across human cortex and cerebellum
Cited by: 76
Author(s): Katie Lunnon, Eilís Hannon, Rebecca Smith, Emma Dempster, Chloe Wong, Joe Burrage, Claire Troakes, Safa Al‐Sarraj, Agnieszka Kepa, Leonard C. Schalkwyk, Jonathan Mill
Software Mentions: 2
Published: over 8 years ago

10.1186/gm444

An imprinted rheumatoid arthritis methylome signature reflects pathogenic phenotype
Cited by: 99
Author(s): John W. Whitaker, Robert Shoemaker, David L. Boyle, Josh Hillman, David W. Anderson, Wei Wang, Gary S. Firestein
Software Mentions: 2
Published: almost 12 years ago

10.1186/s13073-018-0527-4

Elevated polygenic burden for autism is associated with differential DNA methylation at birth
Cited by: 79
Author(s): Eilís Hannon, Diana Schendel, Christine Ladd‐Acosta, Jakob Grove, Christine Søholm Hansen, Shan V. Andrews, David M. Hougaard, Michaeline Bresnahan, Ole Mors, Mads V. Hollegaard, Marie Bækvad‐Hansen, Mady Hornig, Preben Bo Mortensen, Anders D. Børglum, Thomas Werge, Marianne Giørtz Pedersen, Merete Nordentoft, Joseph D. Buxbaum, M. Daniele Fallin, Jonas Bybjerg‐Grauholm, Abraham Reichenberg, Jonathan Mill
Software Mentions: 2
Published: over 6 years ago

10.3390/jcm9051338

Genome-Wide Analysis of the DNA Methylation Profile Identifies the Fragile Histidine Triad (FHIT) Gene as a New Promising Biomarker of Crohn’s Disease
Cited by: 8
Author(s): Tae-Oh Kim, Dong Il Park, Yu Han, Keunsoo Kang, Sae-Gwang Park, Hae Ryoun Park, Joo Mi Yi
Software Mentions: 2
Published: over 4 years ago

10.1186/s13148-018-0556-2

Systematic evaluation of DNA methylation age estimation with common preprocessing methods and the Infinium MethylationEPIC BeadChip array
Cited by: 101
Author(s): Lisa M. McEwen, Meaghan J. Jones, David Lin, Rachel D. Edgar, Lucas T. Husquin, Julia L. MacIsaac, Katia E Ramadori, Alexander M. Morin, Christopher F. Rider, Chris Carlsten, Lluís Quintana‐Murci, Steve Horvath, Michæl S. Kobor
Software Mentions: 2
Published: about 6 years ago

10.1038/srep40569

Dietary phytochemical PEITC restricts tumor development via modulation of epigenetic writers and erasers
Cited by: 26
Author(s): Jung Eun Park, Yang Sun, Sai Kiang Lim, James P. Tam, Matthijs Dekker, Hong Chen, Siu Kwan Sze
Software Mentions: 2
Published: almost 8 years ago

10.1038/srep43345

ELF-MF exposure affects the robustness of epigenetic programming during granulopoiesis
Cited by: 13
Author(s): Melissa Manser, Mohamad Sater, Christoph D. Schmid, Faiza Noreen, Manuel Murbach, Niels Kuster, David Schuermann, Primo Schär
Software Mentions: 2
Published: over 7 years ago

10.1186/s13148-019-0636-y

Parallel profiling of DNA methylation and hydroxymethylation highlights neuropathology-associated epigenetic variation in Alzheimer’s disease
Cited by: 79
Author(s): Adam R. Smith, Rebecca G. Smith, Ehsan Pishva, Eilís Hannon, Janou A. Y. Roubroeks, Joe Burrage, Claire Troakes, Safa Al‐Sarraj, Carolyn Sloan, Jonathan Mill, Daniël L.A. van den Hove, Katie Lunnon
Software Mentions: 2
Published: over 5 years ago

10.3390/nu13051683

Methylation and Expression of FTO and PLAG1 Genes in Childhood Obesity: Insight into Anthropometric Parameters and Glucose–Lipid Metabolism
Cited by: 11
Author(s): Wojciech Czogała, Małgorzata Czogała, Wojciech Strojny, Gracjan Wątor, Paweł Wołkow, Małgorzata Wójcik, Mirosław Bik-Multanowski, Przemysław Tomasik, Andrzej Wędrychowicz, Wojciech Kowalczyk, Karol Miklusiak, Agnieszka Łazarczyk, Przemysław Hałubiec, Szymon Skoczeń
Software Mentions: 2
Published: over 3 years ago

10.1080/15592294.2015.1100786

Interindividual methylomic variation across blood, cortex, and cerebellum: implications for epigenetic studies of neurological and neuropsychiatric phenotypes
Cited by: 363
Author(s): Eilís Hannon, Katie Lunnon, Leonard C. Schalkwyk, Jonathan Mill
Software Mentions: 1
Published: about 9 years ago

10.18632/oncotarget.21885

Bioenergetics of acquired cisplatin resistant H1299 non-small cell lung cancer and P31 mesothelioma cells
Cited by: 9
Author(s): Fintan Geoghegan, Robert Buckland, Eric T. Rogers, Karima Khalifa, Emma B. O’Connor, Mary F. Rooney, Parviz Behnam‐Motlagh, Torbjörn Nilsson, Kjell Grankvist, Richard K. Porter
Software Mentions: 1
Published: about 7 years ago

10.3390/ijms17081291

A Genome-Wide Methylation Approach Identifies a New Hypermethylated Gene Panel in Ulcerative Colitis
Cited by: 27
Author(s): Keunsoo Kang, Jin-Han Bae, Kyudong Han, Eun Soo Kim, Tae-Oh Kim, Joo Mi Yi
Software Mentions: 1
Published: over 8 years ago

10.1289/ehp.1307480

CpG Sites Associated with Cigarette Smoking: Analysis of Epigenome-Wide Data from the Sister Study
Cited by: 91
Author(s): Sophia Harlid, Zongli Xu, Vijayalakshmi Panduri, Dale P. Sandler, Jack A. Taylor
Software Mentions: 1
Published: over 10 years ago

10.1186/s12885-017-3472-5

Loss of DIP2C in RKO cells stimulates changes in DNA methylation and epithelial-mesenchymal transition
Cited by: 25
Author(s): Chatarina Larsson, Muhammad Akhtar-Ali, Tatjana Pandzic, Anders M. Lindroth, Liqun He, Tobias Sjöblom
Software Mentions: 1
Published: over 7 years ago

10.1002/gepi.22086

Estimation of a significance threshold for epigenome‐wide association studies
Cited by: 125
Author(s): Ayden Saffari, Matt J. Silver, Patrizia Zavattari, Loredana Moi, Amedeo Columbano, Emma L. Meaburn, Frank Dudbridge
Software Mentions: 1
Published: about 7 years ago

10.1038/s41398-020-00899-y

Evolutionary conserved role of neural cell adhesion molecule-1 in memory
Cited by: 20
Author(s): Vanja Vukojević, Pavlina Mastrandreas, Andreas Arnold, Péter Fábián, Iris‐Tatjana Kolassa, Sarah Wilker, Thomas Elbert, Dominique J.-F. de Quervain, Andreas Papassotiropoulos, Attila Steták
Software Mentions: 1
Published: over 4 years ago

Projects: bioconductor: methylumi

Papers Mentioning methylumi 75