Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Papers: 10.1186/s13059-021-02388-x
https://doi.org/10.1186/s13059-021-02388-x
Gene set enrichment analysis for genome-wide DNA methylation data
Cited by: 61
Author(s): Jovana Maksimovic, Alicia Oshlack, Belinda Phipson
Published: over 3 years ago
Software Mentions 16
bioconductor: ChAMP
Chip Analysis Methylation Pipeline for Illumina HumanMethylation450 and EPICPapers that mentioned: 208
bioconductor: DMRcate
Methylation array and sequencing spatial analysis methodsPapers that mentioned: 132
bioconductor: DMRforPairs
DMRforPairs: identifying Differentially Methylated Regions between unique samples using array based methylation profilesPapers that mentioned: 6
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in RPapers that mentioned: 6,568
bioconductor: ENmix
Quality control and analysis tools for Illumina DNA methylation BeadChipPapers that mentioned: 27
bioconductor: Harman
The removal of batch effects from datasets using a PCA and constrained optimisation based techniquePapers that mentioned: 10
bioconductor: methylGSA
Gene Set Analysis Using the Outcome of Differential MethylationPapers that mentioned: 11
bioconductor: missMethyl
Analysing Illumina HumanMethylation BeadChip DataPapers that mentioned: 54
bioconductor: wateRmelon
Illumina 450 and EPIC methylation array normalization and metricsPapers that mentioned: 108