Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-021-02388-x

https://doi.org/10.1186/s13059-021-02388-x

Gene set enrichment analysis for genome-wide DNA methylation data

Cited by: 61
Author(s): Jovana Maksimovic, Alicia Oshlack, Belinda Phipson
Published: over 3 years ago

Software Mentions 16

bioconductor: bumphunter
Bump Hunter
Papers that mentioned: 46
bioconductor: ChAMP
Chip Analysis Methylation Pipeline for Illumina HumanMethylation450 and EPIC
Papers that mentioned: 208
bioconductor: DMRcate
Methylation array and sequencing spatial analysis methods
Papers that mentioned: 132
bioconductor: DMRforPairs
DMRforPairs: identifying Differentially Methylated Regions between unique samples using array based methylation profiles
Papers that mentioned: 6
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
bioconductor: ENmix
Quality control and analysis tools for Illumina DNA methylation BeadChip
Papers that mentioned: 27
bioconductor: Harman
The removal of batch effects from datasets using a PCA and constrained optimisation based technique
Papers that mentioned: 10
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
bioconductor: mCSEA
Methylated CpGs Set Enrichment Analysis
Papers that mentioned: 4
bioconductor: methylGSA
Gene Set Analysis Using the Outcome of Differential Methylation
Papers that mentioned: 11
bioconductor: methylumi
Handle Illumina methylation data
Papers that mentioned: 75
bioconductor: minfi
Analyze Illumina Infinium DNA methylation arrays
Papers that mentioned: 506
bioconductor: missMethyl
Analysing Illumina HumanMethylation BeadChip Data
Papers that mentioned: 54
bioconductor: RnBeads
RnBeads
Papers that mentioned: 145
bioconductor: wateRmelon
Illumina 450 and EPIC methylation array normalization and metrics
Papers that mentioned: 108
pypi: package
package is a package to package your package
Papers that mentioned: 1,300