bioconductor: ENmix | Projects | Ecosyste.ms: Papers

10.1186/s13059-021-02388-x

Gene set enrichment analysis for genome-wide DNA methylation data
Cited by: 61
Author(s): Jovana Maksimovic, Alicia Oshlack, Belinda Phipson
Software Mentions: 16
Published: over 3 years ago

Equivalent DNA methylation variation between monozygotic co-twins and unrelated individuals reveals universal epigenetic inter-individual dissimilarity
Cited by: 17
Author(s): Benjamin Planterose Jiménez, Fan Liu, Amke Caliebe, Diego Montiel González, Jordana T. Bell, Manfred Kayser, Athina Vidaki
Software Mentions: 8
Published: almost 4 years ago

10.1186/s12940-021-00754-7

Exposure to arsenic at different life-stages and DNA methylation meta-analysis in buccal cells and leukocytes
Cited by: 11
Author(s): Anne K. Bozack, Philippe Boileau, Linqing Wei, Alan Hubbard, Fenna C.M. Sillé, Catterina Ferreccio, Johanna Acevedo, Lifang Hou, Vesna Ilievski, Craig Steinmaus, Martyn T. Smith, Ana Navas-Acién, Mary V. Gamble, Andrés Cárdenas
Software Mentions: 7
Published: over 3 years ago

10.1371/journal.pone.0229763

Evaluation of pre-processing on the meta-analysis of DNA methylation data from the Illumina HumanMethylation450 BeadChip platform
Cited by: 8
Author(s): Claudia Sala, Pietro Di Lena, Danielle Fernandes Durso, Andrea Prodi, Gastone Castellani, Christine Nardini
Software Mentions: 7
Published: over 4 years ago

10.1101/2020.08.11.20171108

<i>ACE2</i> expression in adipose tissue is associated with COVID-19 cardio-metabolic risk factors and cell type composition
Cited by: 8
Author(s): Julia S. El-Sayed Moustafa, Anne Jackson, Sarah M. Brotman, Li Guan, Sergio Villicaña, Amy L. Roberts, Antonino Zito, Lori L. Bonnycastle, Michael R. Erdos, Narisu Narisu, Heather M. Stringham, Ryan Welch, Tingfen Yan, Timo A. Lakka, Stephen C. J. Parker, Jaakko Tuomilehto, Francis S. Collins, Päivi Pajukanta, Michael Boehnke, Heikki A. Koistinen, Markku Laakso, Mario Falchi, Jordana T. Bell, Laura J. Scott, Karen L. Mohlke, Kerrin S. Small
Software Mentions: 6
Published: over 4 years ago

10.1186/s12859-018-2096-3

A framework for analyzing DNA methylation data from Illumina Infinium HumanMethylation450 BeadChip
Cited by: 32
Author(s): Zhenxing Wang, Xiaoliang Wu, Yadong Wang
Software Mentions: 6
Published: over 6 years ago

10.3390/cancers12113088

DNA Methylation and Breast Cancer Risk: An Epigenome-Wide Study of Normal Breast Tissue and Blood
Cited by: 15
Author(s): Kaoutar Ennour‐Idrissi, Dzevka Dragic, Elissar Issa, Annick Michaud, Sue-Ling Chang, Louise Provencher, Francine Durocher, Caroline Diorio
Software Mentions: 6
Published: about 4 years ago

10.1186/s13148-021-01018-4

Novel DNA methylation signatures of tobacco smoking with trans-ethnic effects
Cited by: 44
Author(s): Colette Christiansen, Juan Castillo-Fernandez, Arce Domingo‐Relloso, Wei Zhao, Julia S. El-Sayed Moustafa, Pei-Chien Tsai, Jane Maddock, Karin Haack, Shelley A. Cole, Sharon L.R. Kardia, Mariam Molokhia, Matthew Suderman, Chris Power, Caroline L Relton, Andrew Wong, Diana Kuh, Alissa Goodman, Kerrin S. Small, Jennifer A. Smith, María Téllez-Plaza, Ana Navas-Acién, George B. Ploubidis, Rebecca Hardy, Jordana T. Bell
Software Mentions: 5
Published: almost 4 years ago

10.1038/s41598-020-64700-2

Genome-wide 5-hydroxymethylcytosine (5hmC) emerges at early stage of in vitro differentiation of a putative hepatocyte progenitor
Cited by: 16
Author(s): Jesús Rafael Rodríguez‐Aguilera, Szilvia Ecsedi, Chloe D. Goldsmith, Marie-Pierre Cros, Mariana Domínguez‐López, Nuria Guerrero‐Celis, Rebeca Pérez‐Cabeza de Vaca, Isabelle Chemin, Félix Recillas‐Targa, Victoria Chagoya de Sánchez, Héctor Hernández-Vargas
Software Mentions: 5
Published: over 4 years ago

10.3390/ijms22157834

Individual DNA Methylation Pattern Shifts in Nanoparticles-Exposed Workers Analyzed in Four Consecutive Years
Cited by: 6
Author(s): Andrea Rössnerová, K. Hoňková, Irena Chvojková, Daniela Pelclová, Vladimı́r Ždı́mal, Jaroslav A. Hubacek, Lucie Lischková, Štěpánka Vlčková, Jakub Ondráček, Štěpánka Dvořáčková, Jan Topinka, Pavel Rössner
Software Mentions: 4
Published: over 3 years ago

10.1038/s41398-019-0489-3

Methylation age acceleration does not predict mortality in schizophrenia
Cited by: 17
Author(s): Kaarina Kowalec, Eilís Hannon, Georgina Mansell, Joe Burrage, Anil P.S. Ori, Roel A. Ophoff, Jonathan Mill, Patrick F. Sullivan
Software Mentions: 4
Published: over 5 years ago

10.1186/s12940-021-00717-y

DNA methylation in the adipose tissue and whole blood of Agent Orange-exposed Operation Ranch Hand veterans: a pilot study
Cited by: 1
Author(s): Matthew Rytel, Rondi A. Butler, Melissa Eliot, Joseph M. Braun, E. Andrés Houseman, Karl T. Kelsey
Software Mentions: 4
Published: over 3 years ago

10.3389/fgene.2019.00801

A Novel Application of Mixed Effects Models for Reconciling Base-Pair Resolution 5-Methylcytosine and 5-Hydroxymethylcytosine Data in Neuroepigenetics
Cited by: 6
Author(s): Joseph Kochmanski, Candace Savonen, Alison I. Bernstein
Software Mentions: 4
Published: about 5 years ago

10.3390/genes11080931

A Linear Regression and Deep Learning Approach for Detecting Reliable Genetic Alterations in Cancer Using DNA Methylation and Gene Expression Data
Cited by: 22
Author(s): Saurav Mallik, Soumita Seth, Tapas Bhadra, Zhongming Zhao
Software Mentions: 3
Published: over 4 years ago

10.1186/s13148-020-00858-w

Histone deacetylase 9 promoter hypomethylation associated with adipocyte dysfunction is a statin-related metabolic effect
Cited by: 10
Author(s): Amna Khamis, Raphaël Boutry, Mickaël Canouil, Sunil Mathew, Stéphane Lobbens, Hutokshi Crouch, Toby Andrew, Amar Abderrahmani, Filippo Tamanini, Philippe Froguel
Software Mentions: 3
Published: over 4 years ago

10.3389/fgene.2020.00671

Methylation Data Processing Protocol and Comparison of Blood and Cerebral Spinal Fluid Following Aneurysmal Subarachnoid Hemorrhage
Cited by: 7
Author(s): Annie I. Arockiaraj, Dongjing Liu, John R. Shaffer, Theresa A. Koleck, Elizabeth Crago, Daniel E. Weeks, Yvette P. Conley
Software Mentions: 3
Published: over 4 years ago

10.1186/s12864-016-3426-3

RELIC: a novel dye-bias correction method for Illumina Methylation BeadChip
Cited by: 89
Author(s): Zongli Xu, Sabine A. S. Langie, Patrick De Boever, Jack A. Taylor, Liang Niu
Software Mentions: 3
Published: almost 8 years ago

10.3390/genes12091408

Years of Schooling Could Reduce Epigenetic Aging: A Study of a Mexican Cohort
Cited by: 1
Author(s): Juan Carlos Gómez-Verján, Marcelino Esparza-Aguilar, Verónica Martín-Martín, Cecilia Salazar-Pérez, Cinthya Cadena-Trejo, Luis Miguel Gutiérrez‐Robledo, José Jaime Martínez‐Magaña, Humberto Nicolini, Pedro Arroyo
Software Mentions: 3
Published: about 3 years ago

10.3389/fcell.2021.671838

Epigenetic Deregulation of the Histone Methyltransferase KMT5B Contributes to Malignant Transformation in Glioblastoma
Cited by: 6
Author(s): Virginia López, Juan Ramón Tejedor, Antonella Carella, María González García, Pablo Santamarina‐Ojeda, Raúl Fernández Pérez, Cristina Mangas, Rocío G. Urdinguio, A.I. Aranburu, Daniel de la Nava, María D. Corte‐Torres, Aurora Astudillo, Manuela Mollejo, Bárbara Meléndez, Agustín F. Fernández, Mario F. Fraga
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0257051

Estrogen and COVID-19 symptoms: Associations in women from the COVID Symptom Study
Cited by: 63
Author(s): Ricardo Costeira, Karla A. Lee, Benjamin Murray, Colette Christiansen, Juan Castillo-Fernandez, Mary Ní Lochlainn, Joan Capdevila Pujol, Heather Macfarlane, Louise C. Kenny, Iain Buchan, Jonathan Wolf, Janice Rymer, Sébastien Ourselin, Claire J. Steves, Timothy D. Spector, Louise Newson, Jordana T. Bell
Software Mentions: 2
Published: about 3 years ago

10.1186/s13148-021-01138-x

Childhood growth and development and DNA methylation age in mid-life
Cited by: 4
Author(s): Jane Maddock, Juan Castillo-Fernandez, Andrew Wong, George B. Ploubidis, Diana Kuh, Jordana T. Bell, Rebecca Hardy
Software Mentions: 2
Published: over 3 years ago

10.1186/s13148-021-01031-7

Weight management intervention identifies association of decreased DNA methylation age with improved functional age measures in older adults with obesity
Cited by: 5
Author(s): Curtis L. Petersen, Brock C. Christensen, John A. Batsis
Software Mentions: 2
Published: over 3 years ago

10.1080/15592294.2019.1603962

Circulating levels of inflammatory markers and DNA methylation, an analysis of repeated samples from a population based cohort
Cited by: 25
Author(s): Robin Myte, Anneli Sundkvist, Bethany Van Guelpen, Sophia Harlid
Software Mentions: 2
Published: over 5 years ago

10.18632/aging.202145

DNA methylation-based age estimation in pediatric healthy tissues and brain tumors
Cited by: 18
Author(s): Teresia Kling, Anna Wenger, Helena Carén
Software Mentions: 2
Published: about 4 years ago

10.3389/fgene.2021.700636

Epigenetic Markers Are Associated With Differences in Isocyanate Biomarker Levels in Exposed Spray-Painters
Cited by: 3
Author(s): Laura W. Taylor, John E. French, Zachary G. Robbins, Leena A. Nylander‐French
Software Mentions: 2
Published: over 3 years ago

10.3390/jcm8091307

Epigenome-Wide Association Analysis of Differentially Methylated Signals in Blood Samples of Patients with Non-Small-Cell Lung Cancer
Cited by: 11
Author(s): Yoonki Hong, Hyemi Choi, Hyun Sub Cheong, Hyoung Doo Shin, Chang Choi, Woo Jin Kim
Software Mentions: 2
Published: about 5 years ago

10.1093/gerona/glz246

DNA methylation age and physical and cognitive ageing
Cited by: 39
Author(s): Jane Maddock, Juan Castillo-Fernandez, Andrew Wong, Rachel Cooper, Marcus Richards, Kenneth Ong, George B. Ploubidis, Alissa Goodman, Diana Kuh, Jordana T. Bell, Rebecca Hardy
Software Mentions: 1
Published: about 5 years ago

Ecosyste.ms: Papers

Projects: bioconductor: ENmix

Papers Mentioning ENmix 27