Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: methylGSA

https://packages.ecosyste.ms/registries/bioconductor.org/packages/methylGSA

Gene Set Analysis Using the Outcome of Differential Methylation
2 versions
Latest release: about 1 year ago
9,652 downloads total

Papers Mentioning methylGSA 11

10.1186/s13059-021-02388-x

Gene set enrichment analysis for genome-wide DNA methylation data
Cited by: 61
Author(s): Jovana Maksimovic, Alicia Oshlack, Belinda Phipson
Software Mentions: 16
Published: over 3 years ago

Genome-Wide DNA Methylation Changes Associated With High-Altitude Acclimatization During an Everest Base Camp Trek
Cited by: 6
Author(s): Ainash Childebayeva, Taylor Harman, Julien Weinstein, Trevor A. Day, Tom D. Brutsaert, Abigail W. Bigham
Software Mentions: 8
Published: over 3 years ago

10.1186/s13148-020-00931-4

TWIST1 DNA methylation is a cell marker of airway and parenchymal lung fibroblasts that are differentially methylated in asthma
Cited by: 7
Author(s): Rachel L. Clifford, Chen Xi Yang, Nick Fishbane, J. Patel, Julia L. MacIsaac, Lisa M. McEwen, Sean May, Marcos Castellanos-Uribe, Parameswaran Nair, Ma’en Obeidat, Michæl S. Kobor, Alan J. Knox, Tillie-Louise Hackett
Software Mentions: 8
Published: about 4 years ago

10.3390/cancers12061461

PDX1 DNA Methylation Distinguishes Two Subtypes of Pancreatic Neuroendocrine Neoplasms with a Different Prognosis
Cited by: 19
Author(s): Gitta Boons, Timon Vandamme, Joe Ibrahim, Geert Roeyen, Ann Driessen, Dieter Peeters, Ben Lawrence, Cristin G. Print, Maria C. W. Peeters, Guy Van Camp, Ken Op de Beeck
Software Mentions: 6
Published: over 4 years ago

10.1186/s13148-020-00944-z

Epigenome-wide association study of Alzheimer’s disease replicates 22 differentially methylated positions and 30 differentially methylated regions
Cited by: 38
Author(s): Qingqin Li, Yu Sun, Tania Wang
Software Mentions: 6
Published: about 4 years ago

10.1038/s41398-020-0710-4

Large epigenome-wide association study of childhood ADHD identifies peripheral DNA methylation associated with disease and polygenic risk burden
Cited by: 49
Author(s): Michael A. Mooney, Peter Ryabinin, Beth Wilmot, Priya Bhatt, Jonathan Mill, Joel T. Nigg
Software Mentions: 6
Published: almost 5 years ago

10.1186/s13148-020-00942-1

Serious neonatal morbidities are associated with differences in DNA methylation among very preterm infants
Cited by: 18
Author(s): Todd M. Everson, T. Michael O’Shea, Amber Burt, Karen Hermetz, Brian S. Carter, Jennifer Helderman, Julie A. Hofheimer, Elisabeth C. McGowan, Charles R. Neal, Steven L. Pastyrnak, Lynne M. Smith, Antoine Soliman, Sheri A. DellaGrotta, Lynne M. Dansereau, Jamés F. Padbury, Barry M. Lester, Carmen J. Marsit
Software Mentions: 6
Published: about 4 years ago

10.1186/s13148-019-0769-z

DNA methylation associated with postpartum depressive symptoms overlaps findings from a genome-wide association meta-analysis of depression
Cited by: 6
Author(s): Dana M. Lapato, Roxann Roberson‐Nay, Robert M. Kirkpatrick, Bradley T. Webb, Timothy P. York, Patricia A. Kinser
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pmed.1003229

Maternal dysglycaemia, changes in the infant’s epigenome modified with a diet and physical activity intervention in pregnancy: Secondary analysis of a randomised control trial
Cited by: 52
Author(s): Elie Antoun, Negusse Tadesse Kitaba, Philip Titcombe, Kathryn V. Dalrymple, Emma Garratt, Sheila J. Barton, Robert Murray, Paul Seed, Joanna D. Holbrook, Michael S. Kobor, David T.S. Lin, Julia L. MacIsaac, Graham C. Burdge, Sara L. White, Lucilla Poston, Keith M. Godfrey, Karen A. Lillycrop
Software Mentions: 5
Published: about 4 years ago

10.1186/s13148-021-01056-y

Associations between childhood family emotional health, fronto-limbic grey matter volume, and saliva 5mC in young adulthood
Cited by: 0
Author(s): John R. Pfeiffer, Angela C. Bustamante, Grace S Kim, Don Armstrong, Annchen R. Knodt, Karestan C. Koenen, Ahmad R. Hariri, Monica Uddin
Software Mentions: 2
Published: over 3 years ago

10.1186/s12885-021-08389-0

DNA methylation signatures associated with prognosis of gastric cancer
Cited by: 8
Author(s): Jing Dai, Akihiro Nishi, Zhexuan Li, Yang Zhang, Zhou Tong, Wei‐Cheng You, Wenqing Li, Kai-Feng Pan
Software Mentions: 2
Published: over 3 years ago