Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: DMRforPairs

https://packages.ecosyste.ms/registries/bioconductor.org/packages/DMRforPairs

DMRforPairs: identifying Differentially Methylated Regions between unique samples using array based methylation profiles
1 version
Latest release: about 1 year ago
15,615 downloads total

Papers Mentioning DMRforPairs 6

10.1186/s13059-021-02388-x

Gene set enrichment analysis for genome-wide DNA methylation data
Cited by: 61
Author(s): Jovana Maksimovic, Alicia Oshlack, Belinda Phipson
Software Mentions: 16
Published: over 3 years ago

DMRforPairs: identifying Differentially Methylated Regions between unique samples using array based methylation profiles
Cited by: 17
Author(s): Martin A. Rijlaarsdam, Yvonne G. van der Zwan, Lambert C. J. Dorssers, Leendert H. J. Looijenga
Software Mentions: 5
Published: over 10 years ago

10.1371/journal.pone.0230253

Comparing genome-scale DNA methylation and CNV marks between adult human cultured ITGA6+ testicular cells and seminomas to assess in vitro genomic stability
Cited by: 8
Author(s): Robert B. Struijk, Lambert C. J. Dorssers, Peter Henneman, Martin A. Rijlaarsdam, Andrea Venema, Aldo Jongejan, Marcel M.A.M. Mannens, Leendert H. J. Looijenga, Sjoerd Repping, Ans M.M. van Pelt
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0122146

Genome Wide DNA Methylation Profiles Provide Clues to the Origin and Pathogenesis of Germ Cell Tumors
Cited by: 59
Author(s): Martin A. Rijlaarsdam, David M. J. Tax, Ad J. M. Gillis, Lambert C. J. Dorssers, Devin C. Koestler, Jeroen de Ridder, Leendert H. J. Looijenga
Software Mentions: 3
Published: over 9 years ago

10.1371/journal.pone.0098330

Seminoma and Embryonal Carcinoma Footprints Identified by Analysis of Integrated Genome-Wide Epigenetic and Expression Profiles of Germ Cell Cancer Cell Lines
Cited by: 29
Author(s): Yvonne G. van der Zwan, Martin A. Rijlaarsdam, Fernando Rossello, Amanda J. Notini, Suzan de Boer, D. Neil Watkins, Ad J. M. Gillis, Lambert C. J. Dorssers, Stefan J. White, Leendert H. J. Looijenga
Software Mentions: 1
Published: over 10 years ago

10.1038/s41598-020-79648-6

Genome wide methylation profiling of selected matched soft tissue sarcomas identifies methylation changes in metastatic and recurrent disease
Cited by: 5
Author(s): Ana Cristina Vargas, Lesley Gray, Christine L. White, Fiona Maclean, Peter Grimison, Nima Mesbah Ardakani, Fiona Bonar, Elizabeth Algar, Alison L. Cheah, Peter Russell, Annabelle Mahar, Anthony J. Gill
Software Mentions: 1
Published: almost 4 years ago