Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: Harman
https://packages.ecosyste.ms/registries/bioconductor.org/packages/Harman
The removal of batch effects from datasets using a PCA and constrained optimisation based technique
1 version
Latest release: about 1 year ago
1 dependent package
18,041 downloads total
Papers Mentioning Harman 10
10.1186/s13059-021-02388-x
Gene set enrichment analysis for genome-wide DNA methylation dataCited by: 61
Author(s): Jovana Maksimovic, Alicia Oshlack, Belinda Phipson
Software Mentions: 16
Published: over 3 years ago
10.7717/peerj.10469
BingleSeq: a user-friendly R package for bulk and single-cell RNA-Seq data analysisCited by: 5
Author(s): Daniel Dimitrov, Quan Gu
Software Mentions: 12
Published: almost 4 years ago
10.3390/genes12030352
Temporal Dynamic Methods for Bulk RNA-Seq Time Series DataCited by: 10
Author(s): Vera-Khlara S. Oh, Robert W. Li
Software Mentions: 12
Published: over 3 years ago
10.1186/s13148-016-0281-7
Effect of prenatal DHA supplementation on the infant epigenome: results from a randomized controlled trialCited by: 62
Author(s): Susan J. van Dijk, Jing Zhou, Timothy J. Peters, Michael Buckley, Brodie Sutcliffe, Yalchin Oytam, Robert Gibson, Andrew J McPhee, Lisa N Yelland, Maria Makrides, Peter L. Molloy, Beverly S. Mühlhäusler
Software Mentions: 4
Published: about 8 years ago
10.1186/s12859-016-1212-5
Risk-conscious correction of batch effects: maximising information extraction from high-throughput genomic datasetsCited by: 48
Author(s): Yalchin Oytam, Fariborz Sobhanmanesh, Konsta Duesing, Joshua C. Bowden, Megan Osmond, Jason P. Ross
Software Mentions: 2
Published: about 8 years ago
10.1186/s12864-018-5362-x
DEBrowser: interactive differential expression analysis and visualization tool for count dataCited by: 167
Author(s): Alper Küçükural, Onur Yukselen, Deniz M. Özata, Melissa J. Moore, Manuel Garber
Software Mentions: 2
Published: almost 6 years ago
10.3390/ijerph18094608
The Inter-Relation of Corporate Social Responsibility at Employee Level, Servant Leadership, and Innovative Work Behavior in the Time of Crisis from the Healthcare Sector of PakistanCited by: 28
Author(s): Naveed Ahmad, Miklas Scholz, Muhammad Zulqarnain Arshad, Syed Khuram Ali Jafri, Raja Irfan Sabir, Waris Ali Khan, Heesup Han
Software Mentions: 1
Published: over 3 years ago
10.1016/j.mex.2019.11.014
Rapid determination of heterocyclic amines in ruminant meats using accelerated solvent extraction and ultra-high performance liquid chromatograph–mass spectrometryCited by: 2
Author(s): Charles F. Manful, Thu Huong Pham, Muhammad Nadeem, Evan Wheeler, Melissa C. Hamilton, Karen M. Doody, Raymond Thomas
Software Mentions: 1
Published: almost 6 years ago
10.3389/fpsyt.2021.740094
The Mediating Role of Loneliness Between Social Support and Depressive Symptoms Among Chinese Rural Adolescents During COVID-19 Outbreak: A Comparative Study Between Left-Behind and Non-left-behind StudentsCited by: 12
Author(s): Tiesheng Hou, Yawei Xie, Xiaofei Mao, Liu Ying, Jianguo Zhang, Jing Wen, Yan Cao, Zhechao Luo, Wenpeng Cai
Software Mentions: 1
Published: about 3 years ago
10.3389/fpsyg.2020.529665
Relationship Between Loneliness and Depression Among Chinese Junior High School Students: The Serial Mediating Roles of Internet Gaming Disorder, Social Network Use, and Generalized Pathological Internet UseCited by: 7
Author(s): Peng Wang, Jun Wang, Yan Yun, Yingdong Si, Xiangping Zhan, Tian Yu
Software Mentions: 1
Published: almost 4 years ago