Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-019-1664-9

https://doi.org/10.1186/s13059-019-1664-9

RnBeads 2.0: comprehensive analysis of DNA methylation data

Cited by: 188
Author(s): Fabian Müller, Michael Scherer, Yassen Assenov, Pavlo Lutsik, Jörn Walter, Thomas Lengauer, Christoph Bock
Published: over 5 years ago

Software Mentions 8

bioconductor: ChAMP
Chip Analysis Methylation Pipeline for Illumina HumanMethylation450 and EPIC
Papers that mentioned: 208
bioconductor: LOLA
Locus overlap analysis for enrichment of genomic ranges
Papers that mentioned: 56
bioconductor: methylKit
DNA methylation analysis from high-throughput bisulfite sequencing results
Papers that mentioned: 154
bioconductor: methylumi
Handle Illumina methylation data
Papers that mentioned: 75
bioconductor: minfi
Analyze Illumina Infinium DNA methylation arrays
Papers that mentioned: 506
bioconductor: RnBeads
RnBeads
Papers that mentioned: 145
bioconductor: wateRmelon
Illumina 450 and EPIC methylation array normalization and metrics
Papers that mentioned: 108
cran: doParallel
Foreach Parallel Adaptor for the 'parallel' Package
Papers that mentioned: 90