Projects: cran: RAMClustR
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/RAMClustR
Mass Spectrometry Metabolomics Feature Clustering and
Interpretation
12 versions
Latest release: over 2 years ago
216 downloads last month
Enhanced Analysis
Educational Contributors:
corey.broeckling@colostate.edu
cbroeckl@colostate.edu
Repository Activity:
Repository Owner:
Corey Broeckling (user)
README Analysis:
Science Score: 100/100
Starting Score: 100 points
Bonuses:
-
+40
Educational commit emails
2 contributors with educational email addresses -
+10
Educational website
Repository owner has educational domain website -
+6
Science terms in README
3 scientific terms found in README -
+20
DOI references
2 DOI references found in README
Penalties:
-
-15
No science keywords
No scientific terms found in keywords/classifiers -
-10
No science terms in description
No scientific terms found in description -
-25
Non-science indicators
1 non-scientific terms found
Very Likely Science (100)
Papers Mentioning RAMClustR 11
10.3390/metabo9100200
The metaRbolomics Toolbox in Bioconductor and beyondCited by: 61
Author(s): Jan Stanstrup, Corey D. Broeckling, Rick Helmus, Nils Hoffmann, Ewy A. Mathé, Thomas Naake, Luca Nicolotti, Kristian Peters, Johannes Michael Rainer, Reza M. Salek, Tobias Schulze, Emma L. Schymanski, Michael A. Stravs, Etienne Thévenot, Hendrik Treutler, Ralf Weber, Egon Willighagen, Michael Witting, Steffen Neumann
Software Mentions: 92
Published: over 6 years ago
10.1186/s13321-020-00477-w
patRoon: open source software platform for environmental mass spectrometry based non-target screeningCited by: 76
Author(s): Rick Helmus, Thomas L. ter Laak, Annemarie P. van Wezel, P. de Voogt, Emma L. Schymanski
Software Mentions: 20
Published: about 5 years ago
10.1093/gigascience/gix037
From chromatogram to analyte to metabolite. How to pick horses for courses from the massive web resources for mass spectral plant metabolomicsCited by: 48
Author(s): Leonardo Perez de Souza, Thomas Naake, Takayuki Tohge, Alisdair R. Fernie
Software Mentions: 12
Published: almost 9 years ago
10.3390/metabo10010028
A Case Report of Switching from Specific Vendor-Based to R-Based Pipelines for Untargeted LC-MS MetabolomicsCited by: 14
Author(s): Álvaro Fernández-Ochoa, Rosa Quirantes-Piné, Isabel Borrás-Linares, María de la Luz Cádiz-Gurrea, Marta E. Alarcón‐Riquelme, Carl Brunius, Antonio Segura‐Carretero
Software Mentions: 3
Published: about 6 years ago
10.1371/journal.pntd.0008138
Altered composition and functional profile of high-density lipoprotein in leprosy patientsCited by: 9
Author(s): Robertha Mariana Rodrigues Lemes, Carlos Adriano De M. E Silva, Maria Ângela de Mello Marques, Geórgia C. Atella, José Augusto da Costa Nery, Maria Renata Sales Nogueira Costa, Patrícia Sammarco Rosa, Cléverson Teixeira Soares, Prithwiraj De, Delphi Chatterjee, Maria Cristina Vidal Pessolani, Cristiana Santos de Macedo
Software Mentions: 2
Published: almost 6 years ago
10.3389/fmolb.2016.00077
Non-targeted Plasma Metabolome of Early and Late Lactation GiltsCited by: 3
Author(s): Lea A. Rempel, Jeremy R. Miles, W. T. Oliver, Corey D. Broeckling
Software Mentions: 2
Published: over 9 years ago
10.3390/nu11112780
White Kidney Bean (Phaseolus Vulgaris L.) Consumption Reduces Fat Accumulation in a Polygenic Mouse Model of ObesityCited by: 24
Author(s): Elizabeth S. Neil, John N. McGinley, Vanessa K. Fitzgerald, Corey A. Lauck, Jeremy A. Tabke, Madyson R. Streeter-McDonald, Linxing Yao, Corey D. Broeckling, Tiffany L. Weir, Michelle T. Foster, Henry J. Thompson
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-020-72456-y
Non-targeted urine metabolomics and associations with prevalent and incident type 2 diabetesCited by: 10
Author(s): Samira Salihović, Corey D. Broeckling, Andrea Ganna, Jessica E. Prenni, Johan Sundström, Christian Berne, Lars Lind, Erik Ingelsson, Tove Fall, Johan Ärnlöv, Christoph Nowak
Software Mentions: 1
Published: over 5 years ago
10.3390/ijms20020431
Non-Targeted Metabolomics Reveals Sorghum Rhizosphere-Associated Exudates are Influenced by the Belowground Interaction of Substrate and Sorghum GenotypeCited by: 39
Author(s): Sarah B. Miller, Adam L. Heuberger, Corey D. Broeckling, Courtney E. Jahn
Software Mentions: 1
Published: about 7 years ago
10.3390/nu12030593
Pulse Crop Effects on Gut Microbial Populations, Intestinal Function, and Adiposity in a Mouse Model of Diet-Induced ObesityCited by: 16
Author(s): John N. McGinley, Vanessa K. Fitzgerald, Elizabeth S. Neil, Heather M Omerigic, Adam L. Heuberger, Tiffany L. Weir, Rebecca J. McGee, George J. Vandemark, Henry J. Thompson
Software Mentions: 1
Published: about 6 years ago
10.3390/biom10101393
Identification of Plasma Glycosphingolipids as Potential Biomarkers for Prostate Cancer (PCa) StatusCited by: 11
Author(s): Ashley J. Snider, Michael C. Seeds, Laurel Johnstone, Justin Snider, Brian Hallmark, Rahul Dutta, Cristina Moraga Franco, John S. Parks, Jeannette T. Bensen, Corey D. Broeckling, James L. Mohler, Gary J. Smith, Elizabeth T.H. Fontham, Hui-Kuan Lin, William Bresette, Susan Sergeant, Floyd H. Chilton
Software Mentions: 1
Published: over 5 years ago