Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1093/gigascience/gix037

https://doi.org/10.1093/gigascience/gix037

From chromatogram to analyte to metabolite. How to pick horses for courses from the massive web resources for mass spectral plant metabolomics

Cited by: 48
Author(s): Leonardo Perez de Souza, Thomas Naake, Takayuki Tohge, Alisdair R. Fernie
Published: over 7 years ago

Software Mentions 12

bioconductor: CAMERA
Collection of annotation related methods for mass spectrometry data
Papers that mentioned: 429
bioconductor: Metab
Metab: An R Package for a High-Throughput Analysis of Metabolomics Data Generated by GC-MS.
Papers that mentioned: 8
bioconductor: MetCirc
Navigating mass spectral similarity in high-resolution MS/MS metabolomics data metabolomics data
Papers that mentioned: 3
bioconductor: MSPrep
Package for Summarizing, Filtering, Imputing, and Normalizing Metabolomics Data
Papers that mentioned: 4
bioconductor: RMassBank
Workflow to process tandem MS files and build MassBank records
Papers that mentioned: 10
bioconductor: SIMAT
GC-SIM-MS data processing and alaysis tool
Papers that mentioned: 9
bioconductor: TargetSearch
A package for the analysis of GC-MS metabolite profiling data
Papers that mentioned: 34
cran: MetaboQC
Normalize Metabolomic Data using QC Signal
Papers that mentioned: 1
cran: RAMClustR
Mass Spectrometry Metabolomics Feature Clustering and Interpretation
Papers that mentioned: 11
pypi: ISA
ISA (Independent Statistics Aggregator) collects node statistics for a cluster of nodes.
Papers that mentioned: 137
pypi: IsoCor
IsoCor: Isotope Correction for mass spectrometry labeling experiments
Papers that mentioned: 42
pypi: Pathomx
Metabolic pathway visualisation and analysis.
Papers that mentioned: 4