Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: RMassBank
https://packages.ecosyste.ms/registries/bioconductor.org/packages/RMassBank
Workflow to process tandem MS files and build MassBank records
1 version
Latest release: about 1 year ago
27,347 downloads total
Papers Mentioning RMassBank 10
10.3390/metabo9100200
The metaRbolomics Toolbox in Bioconductor and beyondCited by: 61
Author(s): Jan Stanstrup, Corey D. Broeckling, Rick Helmus, Nils Hoffmann, Ewy A. Mathé, Thomas Naake, Luca Nicolotti, Kristian Peters, Johannes Michael Rainer, Reza M. Salek, Tobias Schulze, Emma L. Schymanski, Michael A. Stravs, Etienne Thévenot, Hendrik Treutler, Ralf Weber, Egon Willighagen, Michael Witting, Steffen Neumann
Software Mentions: 92
Published: about 5 years ago
10.1093/gigascience/gix037
From chromatogram to analyte to metabolite. How to pick horses for courses from the massive web resources for mass spectral plant metabolomicsCited by: 48
Author(s): Leonardo Perez de Souza, Thomas Naake, Takayuki Tohge, Alisdair R. Fernie
Software Mentions: 12
Published: over 7 years ago
10.1007/s11306-017-1242-7
Navigating freely-available software tools for metabolomics analysisCited by: 165
Author(s): Rachel Spicer, Reza M. Salek, Pablo Moreno-Ger, Daniel Cañueto, Christoph Steinbeck
Software Mentions: 8
Published: over 7 years ago
10.1186/s13321-016-0115-9
MetFrag relaunched: incorporating strategies beyond in silico fragmentationCited by: 597
Author(s): Christoph Ruttkies, Emma L. Schymanski, Sebastian I. Wolf, Juliane Hollender, Steffen Neumann
Software Mentions: 5
Published: almost 9 years ago
10.1007/s11306-015-0879-3
Data standards can boost metabolomics research, and if there is a will, there is a wayCited by: 89
Author(s): Philippe Rocca-Serra, Reza M. Salek, Masanori Arita, Elon Correa, Saravanan Dayalan, Alejandra González-Beltrán, Timothy M. D. Ebbels, Royston Goodacre, Janna Hastings, Kenneth Haug, Albert Koulman, Macha Nikolski, Matej Orešič, Susanna-Assunta Sansone, Daniel Schober, James M. Smith, Christoph Steinbeck, Mark R. Viant, Steffen Neumann
Software Mentions: 5
Published: about 9 years ago
10.1007/s00216-019-01885-0
Supporting non-target identification by adding hydrogen deuterium exchange MS/MS capabilities to MetFragCited by: 14
Author(s): Christoph Ruttkies, Emma L. Schymanski, Nadine Strehmel, Juliane Hollender, Steffen Neumann, Antony J. Williams, Martin Krauß
Software Mentions: 2
Published: over 5 years ago
10.3390/metabo3030517
The Critical Assessment of Small Molecule Identification (CASMI): Challenges and SolutionsCited by: 32
Author(s): Emma L. Schymanski, Steffen Neumann
Software Mentions: 2
Published: over 11 years ago
10.1007/s11306-016-1147-x
Computational tools and workflows in metabolomics: An international survey highlights the opportunity for harmonisation through GalaxyCited by: 64
Author(s): Ralf Weber, Thomas N. Lawson, Reza M. Salek, Timothy M. D. Ebbels, Robert C. Glen, Royston Goodacre, Julian L. Griffin, Kenneth Haug, Albert Koulman, Pablo Moreno-Ger, Markus Ralser, Christoph Steinbeck, Warwick B. Dunn, Mark R. Viant
Software Mentions: 2
Published: almost 8 years ago
10.3390/metabo9010003
Annotating Nontargeted LC-HRMS/MS Data with Two Complementary Tandem Mass Spectral LibrariesCited by: 23
Author(s): Herbert Oberacher, Vera Reinstadler, Marco Kreidl, Michael A. Stravs, Juliane Hollender, Emma L. Schymanski
Software Mentions: 1
Published: almost 6 years ago
10.1186/s13321-017-0207-1
Critical Assessment of Small Molecule Identification 2016: automated methodsCited by: 118
Author(s): Emma L. Schymanski, Christoph Ruttkies, Martin Krauß, Céline Brouard, Tobias Kind, Kai Dührkop, Felicity Allen, Arpana Vaniya, Dries Verdegem, Sebastian Böcker, Juho Rousu, Huibin Shen, Hiroshi Tsugawa, Tanvir Sajed, Oliver Fiehn, Bart Ghesquière, Steffen Neumann
Software Mentions: 1
Published: over 7 years ago