pypi: IsoCor | Projects | Ecosyste.ms: Papers

10.1093/gigascience/gix037

From chromatogram to analyte to metabolite. How to pick horses for courses from the massive web resources for mass spectral plant metabolomics
Cited by: 48
Author(s): Leonardo Perez de Souza, Thomas Naake, Takayuki Tohge, Alisdair R. Fernie
Software Mentions: 12
Published: over 7 years ago

10.1038/s41598-018-25015-5

Metabolic systems analysis of LPS induced endothelial dysfunction applied to sepsis patient stratification
Cited by: 22
Author(s): Sarah McGarrity, Ósk Anuforo, Haraldur Halldórsson, Andreas Bergmann, Skarphéđinn Halldórsson, Sirus Palsson, H Henriksen, Pär I. Johansson, Óttar Rolfsson
Software Mentions: 5
Published: over 6 years ago

10.1186/s12859-020-03632-0

Escher-Trace: a web application for pathway-based visualization of stable isotope tracing data
Cited by: 9
Author(s): Avi Kumar, Jack Mitchener, Zachary A. King, Christian M. Metallo
Software Mentions: 4
Published: over 4 years ago

10.1038/s41598-018-36293-4

Correcting for natural isotope abundance and tracer impurity in MS-, MS/MS- and high-resolution-multiple-tracer-data from stable isotope labeling experiments with IsoCorrectoR
Cited by: 71
Author(s): P Heinrich, Christian Köhler, Lisa Ellmann, Paul Kuerner, Rainer Spang, Peter J. Oefner, Katja Dettmer
Software Mentions: 4
Published: almost 6 years ago

10.3390/metabo10040150

Sink/Source Balance of Leaves Influences Amino Acid Pools and Their Associated Metabolic Fluxes in Winter Oilseed Rape (Brassica napus L.)
Cited by: 10
Author(s): Younès Dellero, Maud Heuillet, Nathalie Marnet, Floriant Bellvert, Pierre Millard, Alain Bouchereau
Software Mentions: 3
Published: over 4 years ago

10.3390/metabo11050310

Correcting for Naturally Occurring Mass Isotopologue Abundances in Stable-Isotope Tracing Experiments with PolyMID
Cited by: 3
Author(s): Heesoo Jeong, Yan Yu, Henrik J. Johansson, Frank C. Schroeder, Janne Lehtiö, Nathaniel M. Vacanti
Software Mentions: 3
Published: over 3 years ago

10.1186/s12859-016-1360-7

FluxFix: automatic isotopologue normalization for metabolic tracer analysis
Cited by: 63
Author(s): Sophie Trefely, Peter Ashwell, Nathaniel W. Snyder
Software Mentions: 3
Published: almost 8 years ago

10.3390/metabo10060250

Photosynthetic Co-production of Succinate and Ethylene in a Fast-Growing Cyanobacterium, Synechococcus elongatus PCC 11801
Cited by: 30
Author(s): Annesha Sengupta, Prem Pritam, Damini Jaiswal, Anindita Bandyopadhyay, Himadri B. Pakrasi, Pramod P. Wangikar
Software Mentions: 2
Published: over 4 years ago

10.1038/srep46249

Elucidating dynamic metabolic physiology through network integration of quantitative time-course metabolomics
Cited by: 103
Author(s): Aarash Bordbar, James T. Yurkovich, Giuseppe Paglia, Óttar Rolfsson, Ólafur E. Sigurjónsson, Bernhard Ø. Palsson
Software Mentions: 2
Published: over 7 years ago

10.1038/srep42135

Acetate fluxes in Escherichia coli are determined by the thermodynamic control of the Pta-AckA pathway
Cited by: 109
Author(s): Brice Enjalbert, Pierre Millard, Mickael Dinclaux, Jean‐Charles Portais, Fabien Létisse
Software Mentions: 2
Published: almost 8 years ago

10.18632/oncotarget.9666

Targeting ACLY sensitizes castration-resistant prostate cancer cells to AR antagonism by impinging on an ACLY-AMPK-AR feedback mechanism
Cited by: 55
Author(s): Supriya Shah, Whitney J. Carriveau, Jinyang Li, Sydney L. Campbell, Piotr Kopiński, Hee‐Woong Lim, Natalie A. Daurio, Sophie Trefely, Kyoung Jae Won, Douglas C. Wallace, Constantinos Koumenis, Anthony A. Mancuso, Kathryn E. Wellen
Software Mentions: 2
Published: over 8 years ago

10.1128/mSystems.00091-20

The Entner-Doudoroff and Nonoxidative Pentose Phosphate Pathways Bypass Glycolysis and the Oxidative Pentose Phosphate Pathway in Ralstonia solanacearum
Cited by: 12
Author(s): Poonam Jyoti, Manu Shree, Chandrakant Joshi, Tulika Prakash, Suvendra Kumar Ray, Siddhartha Sankar Satapathy, Shyam Kumar Masakapalli
Software Mentions: 2
Published: over 4 years ago

10.1186/s12934-016-0485-8

Production of para-aminobenzoic acid from different carbon-sources in engineered Saccharomyces cerevisiae
Cited by: 26
Author(s): Nils Averesch, Gal Winter, Jens O. Krömer
Software Mentions: 1
Published: over 8 years ago

10.1186/s12934-018-0959-y

Engineering of Escherichia coli for Krebs cycle-dependent production of malic acid
Cited by: 24
Author(s): Jean François, Clément Auriol, Audrey Baylac, Romain Irague, Clémentine Dressaire, Marc Carnicer, Stéphanie Heux, Jean François, Thomas Walther
Software Mentions: 1
Published: over 6 years ago

10.1186/s12934-018-1040-6

Transcriptomic and fluxomic changes in Streptomyces lividans producing heterologous protein
Cited by: 14
Author(s): Wouter Daniels, Jeroen Bouvin, Tobias Busche, Christian Rückert, Kenneth Simoens, Spyridoula Karamanou, Lieve Van Mellaert, Ólafur H. Friðjónsson, Bart Nicolaı̈, Anastassios Economou, Jörn Kalinowski, Jozef Anné, Kristel Bernaerts
Software Mentions: 1
Published: almost 6 years ago

10.3390/microorganisms8060904

Isotopic Tracers Unveil Distinct Fates for Nitrogen Sources during Wine Fermentation with Two Non-Saccharomyces Strains
Cited by: 3
Author(s): Ying Su, Pauline Seguinot, Audrey Bloem, Anne Ortiz‐Julien, José María Heras, José Manuel Guillamón, Carole Camarasa
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pbio.3001359

Glycerol suppresses glucose consumption in trypanosomes through metabolic contest
Cited by: 4
Author(s): Stefan Allmann, Marion Wargnies, Nicolas Plazolles, Edern Cahoreau, Marc Biran, Pauline Morand, Erika Pineda, Hanna Kulyk, Corinne Asencio, Oriana Villafraz, Loïc Rivière, Emmanuel Tétaud, Brice Rotureau, Arnaud Mourier, Jean‐Charles Portais, Frédéric Bringaud
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0066386

The Carbon Storage Regulator (Csr) System Exerts a Nutrient-Specific Control over Central Metabolism in Escherichia coli Strain Nissle 1917
Cited by: 52
Author(s): Olga Revelles, Pierre Millard, Jean-Philippe Nougayrède, Ulrich Dobrindt, Éric Oswald, Fabien Létisse, Jean‐Charles Portais
Software Mentions: 1
Published: over 11 years ago

10.1038/s41419-018-0662-2

DNMT1 mediates metabolic reprogramming induced by Epstein–Barr virus latent membrane protein 1 and reversed by grifolin in nasopharyngeal carcinoma
Cited by: 58
Author(s): Xiangjian Luo, Liping Hong, Chunxia Cheng, Namei Li, Xu Zhao, Feng Shi, Ji‐Kai Liu, Jia Fan, Jian Zhou, Ann M. Bode, Yang Cao
Software Mentions: 1
Published: over 6 years ago

10.1038/s41419-018-0296-4

Pyruvate kinase M2 regulates photoreceptor structure, function, and viability
Cited by: 43
Author(s): Ammaji Rajala, Yuhong Wang, Richard S. Brush, Kristine Tsantilas, Connor S.R. Jankowski, Ken J. Lindsay, Jonathan D. Linton, James B. Hurley, Robert E. Anderson, Raju V S Rajala
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41419-018-1142-4

YAP1 enhances NF-κB-dependent and independent effects on clock-mediated unfolded protein responses and autophagy in sarcoma
Cited by: 30
Author(s): Adrian Rivera-Reyes, Shuai Ye, Gloria E. Marino, Shaun Egolf, Gabrielle E. Ciotti, Susan Chor, Ying Liu, Jessica M. Posimo, Paul M.C. Park, Koreana Pak, Yael Babichev, Jaimarie Sostre-Colón, Feven Tameire, Nektaria Maria Leli, Constantinos Koumenis, Donita C. Brady, Anthony A. Mancuso, Kristy Weber, Rebecca A. Gladdy, Jun Qi, T.S. Karin Eisinger-Mathason
Software Mentions: 1
Published: about 6 years ago

10.1186/s40478-020-01114-1

Glioma cells require one-carbon metabolism to survive glutamine starvation
Cited by: 27
Author(s): Kazuhiro Tanaka, Takashi Sasayama, Hiroaki Nagashima, Yasuhiro Irino, Masatomo Takahashi, Yoshihiro Izumi, Takiko Uno, Naoya Satoh, Akane Kitta, Katsusuke Kyotani, Yuichi Fujita, Mitsuru Hashiguchi, Tomoaki Nakai, Masaaki Kohta, Yoichi Uozumi, Masakazu Shinohara, Kohkichi Hosoda, Takeshi Bamba, Eiji Kohmura
Software Mentions: 1
Published: almost 4 years ago

10.1038/s12276-020-00547-x

Phospholipid dynamics in ex vivo lung cancer and normal lung explants
Cited by: 14
Author(s): Julia Lesko, Alexander Triebl, Elvira Stacher‐Priehse, Nicole Fink-Neuböck, Jörg Lindenmann, Freyja‐Maria Smolle‐Jüttner, Harald Köfeler, Andelko Hrzenjak, Horst Olschewski, Katharina Leithner
Software Mentions: 1
Published: almost 4 years ago

10.3389/fphys.2019.00657

Differential Metabolism of Medium-Chain Fatty Acids in Differentiated Human-Induced Pluripotent Stem Cell-Derived Astrocytes
Cited by: 21
Author(s): Sarah Sonnay, Anirikh Chakrabarti, Jonathan Thévenet, Andreas Wiederkehr, Nicolas Christinat, Mojgan Masoodi
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.ppat.1007245

Enzymatic chokepoints and synergistic drug targets in the sterol biosynthesis pathway of Naegleria fowleri
Cited by: 30
Author(s): Wenxu Zhou, Anjan Debnath, Gareth K. Jennings, Hye Jee Hahn, Boden H. Vanderloop, Minu Chaudhuri, W. David Nes, L.M. Podust
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.ppat.1007412

Glycerol supports growth of the Trypanosoma brucei bloodstream forms in the absence of glucose: Analysis of metabolic adaptations on glycerol-rich conditions
Cited by: 30
Author(s): Erika Pineda, Magali Thonnus, Muriel Mazet, Arnaud Mourier, Edern Cahoreau, Hanna Kulyk, Jean-William Dupuy, Marc Biran, Cyril Masante, Stefan Allmann, Loïc Rivière, Brice Rotureau, Jean‐Charles Portais, Frédéric Bringaud
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.ppat.1007502

Gluconeogenesis is essential for trypanosome development in the tsetse fly vector
Cited by: 30
Author(s): Marion Wargnies, Éloïse Bertiaux, Edern Cahoreau, Nicole Ziebart, Aline Crouzols, Pauline Morand, Marc Biran, Stefan Allmann, Jane Hubert, Oriana Villafraz, Yoann Millerioux, Nicolas Plazolles, Corinne Asencio, Loïc Rivière, Brice Rotureau, Michael Boshart, Jean‐Charles Portais, Frédéric Bringaud
Software Mentions: 1
Published: almost 6 years ago

10.1128/mSystems.00745-20

Charting the Metabolic Landscape of the Facultative Methylotroph Bacillus methanolicus
Cited by: 10
Author(s): Baudoin Delépine, Marina Gil López, Marc Carnicer, Cláudia M. Vicente, Volker F. Wendisch, Stéphanie Heux
Software Mentions: 1
Published: about 4 years ago

10.7554/eLife.45572

Cysteine dioxygenase 1 is a metabolic liability for non-small cell lung cancer
Cited by: 62
Author(s): Yun Pyo Kang, Laura Torrente, Aimee Falzone, Cody M Elkins, Min Liu, John M. Asara, Christian C. Dibble, Gina M. DeNicola
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms19113325

Stable Isotope Labeling Highlights Enhanced Fatty Acid and Lipid Metabolism in Human Acute Myeloid Leukemia
Cited by: 40
Author(s): Lucille Stuani, Fabien Riols, Pierre Millard, Marie Sabatier, Aurélie Batut, Estelle Saland, Fanny Viars, Laure Tonini, Sonia Zaghdoudi, Laëtitia K. Linares, Jean‐Charles Portais, Jean-Emmanuel Sarry, Justine Bertrand‐Michel
Software Mentions: 1
Published: about 6 years ago

10.1016/j.cmet.2018.09.002

PML-Regulated Mitochondrial Metabolism Enhances Chemosensitivity in Human Ovarian Cancers
Cited by: 149
Author(s): Géraldine Gentric, Yann Kieffer, Virginie Mieulet, Oumou Goundiam, Claire Bonneau, Fariba Némati, Ilse Hurbain, Graça Raposo, Tatiana Popova, Marc‐Henri Stern, Valérie Lallemand-Breitenbach, Sebastian Müller, Tatiana Cañeque, Raphaël Rodriguez, Anne Vincent‐Salomon, Rodrigue Rossignol, Fatima Mechta‐Grigoriou
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12859-019-2669-9

ElemCor: accurate data analysis and enrichment calculation for high-resolution LC-MS stable isotope labeling experiments
Cited by: 340
Author(s): Di Du, Lin Tan, Yumeng Wang, Bo Peng, John N. Weinstein, Fredric E. Wondisford, Xiaoyang Su, Philip L. Lorenzi
Software Mentions: 1
Published: almost 6 years ago

10.3390/biom8040151

Analytical Considerations of Stable Isotope Labelling in Lipidomics
Cited by: 26
Author(s): Alexander Triebl, Markus R. Wenk
Software Mentions: 1
Published: about 6 years ago

10.1186/2049-3002-2-21

Succinate dehydrogenase inhibition leads to epithelial-mesenchymal transition and reprogrammed carbon metabolism
Cited by: 135
Author(s): Paul‐Joseph Aspuria, Sophia Y. Lunt, Leif Väremo, Laurent Vergnes, Maricel Gozo, Jessica A. Beach, Brenda C. Salumbides, Karen Reue, Wolf R. Wiedemeyer, Jens Nielsen, Beth Y. Karlan, Sandra Oršulić
Software Mentions: 1
Published: almost 10 years ago

10.1186/s40170-019-0205-z

Cysteine catabolism and the serine biosynthesis pathway support pyruvate production during pyruvate kinase knockdown in pancreatic cancer cells
Cited by: 31
Author(s): Yu Li, Shao Thing Teoh, Elliot Ensink, Martin P. Ogrodzinski, Che Yang, Ana I. Vázquez, Sophia Y. Lunt
Software Mentions: 1
Published: almost 5 years ago

10.1186/s40170-020-00212-x

PHGDH supports liver ceramide synthesis and sustains lipid homeostasis
Cited by: 10
Author(s): Yun Pyo Kang, Aimee Falzone, Min Liu, Paloma González-Sánchez, Byungjoo Choi, Jonathan L. Coloff, James J. Saller, Florian A. Karreth, Gina M. DeNicola
Software Mentions: 1
Published: over 4 years ago

10.3390/metabo11050271

Exploring the Glucose Fluxotype of the E. coli y-ome Using High-Resolution Fluxomics
Cited by: 5
Author(s): Cécilia Bergès, Edern Cahoreau, Pierre Millard, Brice Enjalbert, Mickael Dinclaux, Maud Heuillet, Hanna Kulyk, Lara Gales, Noémie Butin, Maxime Chazalviel, Tony Palama, Matthieu Guionnet, Sergueï Sokol, Lindsay Peyriga, Floriant Bellvert, Stéphanie Heux, Jean‐Charles Portais
Software Mentions: 1
Published: over 3 years ago

10.3390/metabo8040095

Dynamic Metabolic Response to Adriamycin-Induced Senescence in Breast Cancer Cells
Cited by: 17
Author(s): Rong You, Jin Dai, Ping Zhang, Gregory A. Barding, Daniel Raftery
Software Mentions: 1
Published: almost 6 years ago

10.3390/metabo9100205

Limitations of Deuterium-Labelled Substrates for Quantifying NADPH Metabolism in Heterotrophic Arabidopsis Cell Cultures
Cited by: 5
Author(s): E. Norbert Smith, James McCullagh, George Ratcliffe, Nicholas J. Kruger
Software Mentions: 1
Published: about 5 years ago

10.1007/s11306-019-1580-8

Functional analysis of isoprenoid precursors biosynthesis by quantitative metabolomics and isotopologue profiling
Cited by: 7
Author(s): Sara Castaño-Cerezo, Hanna Kulyk-Barbier, Pierre Millard, Jean‐Charles Portais, Stéphanie Heux, Gilles Truan, Floriant Bellvert
Software Mentions: 1
Published: over 5 years ago

10.1007/s11306-017-1302-z

13C-assisted metabolic flux analysis to investigate heterotrophic and mixotrophic metabolism in Cupriavidus necator H16
Cited by: 29
Author(s): Swathi Alagesan, Nigel P. Minton, Naglis Malys
Software Mentions: 1
Published: almost 7 years ago

10.1111/1751-7915.12749

Quantitative <sup>13</sup>C‐isotope labelling‐based analysis to elucidate the influence of environmental parameters on the production of fermentative aromas during wine fermentation
Cited by: 46
Author(s): Stéphanie Rollero, Jean-Roch Mouret, Audrey Bloem, Isabelle Sanchez, Anne Ortiz‐Julien, Jean‐Marie Sablayrolles, Sylvie Dequin, Carole Camarasa
Software Mentions: 1
Published: over 7 years ago

Projects: pypi: IsoCor

Papers Mentioning IsoCor 42