Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12859-020-03819-5

https://doi.org/10.1186/s12859-020-03819-5

Cited by: 18
Author(s): Fédérico Marini, Jan Linke, Harald Binder
Published: over 3 years ago

Software Mentions 17

bioconductor: DESeq2

Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583

bioconductor: goseq

Gene Ontology analyser for RNA-seq and other length biased data
Papers that mentioned: 132

bioconductor: iSEE

Interactive SummarizedExperiment Explorer
Papers that mentioned: 13

bioconductor: limma

Linear Models for Microarray Data
Papers that mentioned: 7,776

bioconductor: pcaExplorer

Interactive Visualization of RNA-seq Data Using a Principal Components Approach
Papers that mentioned: 26

bioconductor: SummarizedExperiment

SummarizedExperiment container
Papers that mentioned: 52

bioconductor: topGO

Enrichment Analysis for Gene Ontology
Papers that mentioned: 652

cran: DT

A Wrapper of the JavaScript Library 'DataTables'
Papers that mentioned: 74

cran: ggplot2

Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441

cran: knitr

A General-Purpose Package for Dynamic Report Generation in R
Papers that mentioned: 157

cran: pkgdown

Make Static HTML Documentation for a Package
Papers that mentioned: 5

cran: profvis

Interactive Visualizations for Profiling R Code
Papers that mentioned: 5

cran: rintrojs

Wrapper for the 'Intro.js' Library
Papers that mentioned: 3

cran: shinyAce

Ace Editor Bindings for Shiny
Papers that mentioned: 3

cran: shinyBS

Twitter Bootstrap Components for Shiny
Papers that mentioned: 15

cran: shinydashboard

Create Dashboards with 'Shiny'
Papers that mentioned: 22

pypi: d3heatmap

Python package to create interactive heatmap based on d3js.
Papers that mentioned: 26