Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12859-020-03819-5

https://doi.org/10.1186/s12859-020-03819-5

ideal: an R/Bioconductor package for interactive differential expression analysis

Cited by: 18
Author(s): Fédérico Marini, Jan Linke, Harald Binder
Published: about 4 years ago

Software Mentions 17

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: goseq
Gene Ontology analyser for RNA-seq and other length biased data
Papers that mentioned: 132
bioconductor: iSEE
Interactive SummarizedExperiment Explorer
Papers that mentioned: 13
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
bioconductor: pcaExplorer
Interactive Visualization of RNA-seq Data Using a Principal Components Approach
Papers that mentioned: 26
bioconductor: SummarizedExperiment
SummarizedExperiment container
Papers that mentioned: 52
bioconductor: topGO
Enrichment Analysis for Gene Ontology
Papers that mentioned: 652
cran: DT
A Wrapper of the JavaScript Library 'DataTables'
Papers that mentioned: 74
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: knitr
A General-Purpose Package for Dynamic Report Generation in R
Papers that mentioned: 157
cran: pkgdown
Make Static HTML Documentation for a Package
Papers that mentioned: 5
cran: profvis
Interactive Visualizations for Profiling R Code
Papers that mentioned: 5
cran: rintrojs
Wrapper for the 'Intro.js' Library
Papers that mentioned: 3
cran: shinyAce
Ace Editor Bindings for Shiny
Papers that mentioned: 3
cran: shinyBS
Twitter Bootstrap Components for Shiny
Papers that mentioned: 15
cran: shinydashboard
Create Dashboards with 'Shiny'
Papers that mentioned: 22
pypi: d3heatmap
Python package to create interactive heatmap based on d3js.
Papers that mentioned: 26