bioconductor: pcaExplorer | Projects

10.1186/s12859-019-2879-1

pcaExplorer: an R/Bioconductor package for interacting with RNA-seq principal components
Cited by: 146
Author(s): Fédérico Marini, Harald Binder
Software Mentions: 18
Published: over 5 years ago

10.1186/s12859-020-03819-5

ideal: an R/Bioconductor package for interactive differential expression analysis
Cited by: 18
Author(s): Fédérico Marini, Jan Linke, Harald Binder
Software Mentions: 17
Published: almost 4 years ago

Triple RNA-Seq characterizes aphid gene expression in response to infection with unequally virulent strains of the endosymbiont Hamiltonella defensa
Cited by: 5
Author(s): Heidi Kaech, Alice B. Dennis, Christoph Vorburger
Software Mentions: 10
Published: over 3 years ago

10.1007/s00401-020-02187-x

Interleukin-1 promotes autoimmune neuroinflammation by suppressing endothelial heme oxygenase-1 at the blood–brain barrier
Cited by: 44
Author(s): Judith Hauptmann, Lisa Johann, Fédérico Marini, Maja Kitic, E. Colombo, Ilgiz A. Mufazalov, Martin W. Krueger, Khalad Karram, Sonja Moos, Florian Wanke, Florian C. Kurschus, Matthias Klein, Sílvia Cardoso, Johannes Strauß, Subhashini Bolisetty, Fred Lühder, Markus Schwaninger, Harald Binder, Ingo Bechman, Tobias Bopp, Anupam Agarwal, Miguel P. Soares, Tommy Regen, Ari Waisman
Software Mentions: 9
Published: over 4 years ago

10.3389/fgene.2021.664424

Transcriptomes of an Array of Chicken Ovary, Intestinal, and Immune Cells and Tissues
Cited by: 5
Author(s): Eliah Overbey, Theros T Ng, Pietro Catini, Lisa Griggs, Paul A. Stewart, Suzana Tkalčić, R. David Hawkins, Yvonne Drechsler
Software Mentions: 7
Published: over 3 years ago

10.7554/eLife.52511

ERK3/MAPK6 controls IL-8 production and chemotaxis
Cited by: 23
Author(s): Katarzyna Bogucka, Malvika Pompaiah, Fédérico Marini, Harald Binder, Gregory S. Harms, Manuel Kaulich, Matthias Klein, Christian Michel, Markus P. Radsak, Sebastian Rosigkeit, Peter Grimminger, Hansjörg Schild, Krishnaraj Rajalingam
Software Mentions: 7
Published: over 4 years ago

10.1016/j.celrep.2019.06.039

Acute Iron Deprivation Reprograms Human Macrophage Metabolism and Reduces Inflammation In Vivo
Cited by: 67
Author(s): Marie Pereira, Tai‐Di Chen, Norzawani Buang, Antoni Olona, Jeong‐Hun Ko, Maria Prendecki, Ana S.H. Costa, Efterpi Nikitopoulou, Laura Tronci, Charles D. Pusey, H. Terence Cook, Stephen P. McAdoo, Christian Frezza, Jacques Behmoaras
Software Mentions: 6
Published: over 5 years ago

10.1002/pld3.242

Lipophilic signals lead to organ‐specific gene expression changes in <i>Arabidopsis</i> seedlings
Cited by: 4
Author(s): Ashley E. Cannon, Chengshi Yan, David J. Burks, Xiaolan Rao, Rajeev K. Azad, Kent D. Chapman
Software Mentions: 6
Published: over 4 years ago

10.1038/s41598-021-94442-8

Identification of pathological transcription in autosomal dominant polycystic kidney disease epithelia
Cited by: 1
Author(s): Sebastian Friedrich, Hannah Müller, Caroline Riesterer, Hannah Schüller, Katja Friedrich, Carlotta Leonie Wörner, Tilman Busch, Amandine Viau, E. Wolfgang Kuehn, Michael Köttgen, Alexis Hofherr
Software Mentions: 6
Published: over 3 years ago

10.3389/fgene.2020.00011

Novel Combined Tissue Transcriptome Analysis After Lentogenic Newcastle Disease Virus Challenge in Inbred Chicken Lines of Differential Resistance
Cited by: 6
Author(s): Melissa S. Deist, Rodrigo A. Gallardo, Jack C. M. Dekkers, Huaijun Zhou, Susan J. Lamont
Software Mentions: 6
Published: almost 5 years ago

10.1186/s12864-017-4380-4

Resistant and susceptible chicken lines show distinctive responses to Newcastle disease virus infection in the lung transcriptome
Cited by: 36
Author(s): Melissa S. Deist, Rodrigo A. Gallardo, David Bunn, Jack C. M. Dekkers, Huaijun Zhou, Susan J. Lamont
Software Mentions: 5
Published: almost 7 years ago

10.1038/s41598-018-24830-0

Novel analysis of the Harderian gland transcriptome response to Newcastle disease virus in two inbred chicken lines
Cited by: 21
Author(s): Melissa S. Deist, Rodrigo A. Gallardo, David Bunn, T. Ross Kelly, Jack C. M. Dekkers, Huaijun Zhou, Susan J. Lamont
Software Mentions: 4
Published: over 6 years ago

10.3390/genes12020255

Transcriptome Response of Liver and Muscle in Heat-Stressed Laying Hens
Cited by: 6
Author(s): Yan Wang, Xiaoyun Jia, John Hsieh, Melissa S. Monson, J. Zhang, Dingming Shu, Qinghua Nie, Michael E. Persia, Max F. Rothschild, Susan J. Lamont
Software Mentions: 4
Published: almost 4 years ago

10.1038/s41598-019-50051-0

Genetic lines respond uniquely within the chicken thymic transcriptome to acute heat stress and low dose lipopolysaccharide
Cited by: 14
Author(s): Melissa S. Monson, Angelica G. Van Goor, Michael E. Persia, Max F. Rothschild, Carl J. Schmidt, Susan J. Lamont
Software Mentions: 4
Published: about 5 years ago

10.3389/fimmu.2021.632997

Transcriptional Profiling of STAT1 Gain-of-Function Reveals Common and Mutation-Specific Fingerprints
Cited by: 12
Author(s): Simone Giovannozzi, Jonas Demeulemeester, R. Schrijvers, Rik Gijsbers
Software Mentions: 3
Published: almost 4 years ago

10.1186/s12870-020-02590-2

Transcriptomic analysis at organ and time scale reveals gene regulatory networks controlling the sulfate starvation response of Solanum lycopersicum
Cited by: 11
Author(s): Javier Canales, Felipe Uribe, Carlos Henríquez-Valencia, Carlos Lovazzano, Joaquı́n Medina, Elena A. Vidal
Software Mentions: 3
Published: about 4 years ago

10.1016/j.exphem.2020.10.002

HOXA9/IRX1 expression pattern defines two subgroups of infant MLL-AF4-driven acute lymphoblastic leukemia
Cited by: 8
Author(s): Vasiliki Symeonidou, Katrin Ottersbach
Software Mentions: 3
Published: almost 4 years ago

10.3389/fcell.2021.652017

Transplanted Erythropoietin-Expressing Mesenchymal Stem Cells Promote Pro-survival Gene Expression and Protect Photoreceptors From Sodium Iodate-Induced Cytotoxicity in a Retinal Degeneration Model
Cited by: 4
Author(s): Avin Ee-Hwan Koh, Hiba Amer Alsaeedi, Munirah Binti Abd Rashid, Chenshen Lam, Mohd Hairul Nizam Harun, Min Hwei Ng, Hazlita Mohd Isa, K. Then, Mae-Lynn Catherine Bastion, Aisha Farhana, Mohammad Khursheed Alam, Suresh Kumar Subbiah, Pooi Ling Mok
Software Mentions: 3
Published: over 3 years ago

10.3389/fphys.2018.00492

What Makes the Harderian Gland Transcriptome Different From Other Chicken Immune Tissues? A Gene Expression Comparative Analysis
Cited by: 10
Author(s): Melissa S. Deist, Susan J. Lamont
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-020-63040-5

Circulating RNA Transcriptome of Pregnant Women with TSH Just Above the Trimester-Specific Reference and its Correlation with the Hypertensive Phenotype
Cited by: 2
Author(s): Andréa Harumy de Lima Hirata, Luiz Antônio de Jesus Rocha, Valdelena Alessandra da Silva, Rafael Fernandes Almeida, Lucas dos Santos Bacigalupo, Patrícia Siqueira Varela, Leonardo Martins Silva, João Bosco Pesquero, Humberto Dellê, Cleber Camacho
Software Mentions: 3
Published: over 4 years ago

10.1038/s41598-020-78871-5

Long-term exposure of human endothelial cells to metformin modulates miRNAs and isomiRs
Cited by: 12
Author(s): Angelica Giuliani, Eric Londin, Manuela Ferracin, Emanuela Mensà, Francesco Prattichizzo, Deborah Ramini, Fiorella Marcheselli, Rina Recchioni, Maria Rita Rippo, Massimiliano Bonafè, Isidore Rigoutsos, Fabiola Olivieri, Jacopo Sabbatinelli
Software Mentions: 2
Published: almost 4 years ago

10.3389/fmicb.2020.592615

Manganese Depletion Leads to Multisystem Changes in the Transcriptome of the Opportunistic Pathogen Streptococcus sanguinis
Cited by: 12
Author(s): Tanya Puccio, Karina S Kunka, Bin Zhu, Ping Xu, Todd Kitten
Software Mentions: 2
Published: about 4 years ago

10.3390/jof7010011

Botrytis cinerea Transcriptome during the Infection Process of the Bryophyte Physcomitrium patens and Angiosperms
Cited by: 11
Author(s): Guillermo Reboledo, Astrid Agorio, Lucía Vignale, Ramón Alberto Batista-García, Inés Ponce de León
Software Mentions: 2
Published: almost 4 years ago

10.3389/fcimb.2021.733811

The Development of Ovine Gastric and Intestinal Organoids for Studying Ruminant Host-Pathogen Interactions
Cited by: 20
Author(s): David W. Smith, Daniel D. Price, Alison Burrells, Marc Faber, Katie A. Hildersley, Cosmin Chintoan-Uta, Ambre Chapuis, Mark P. Stevens, Karen Stevenson, Stewart T. G. Burgess, Elisabeth A. Innes, Alasdair J. Nisbet, Tom N. McNeilly
Software Mentions: 2
Published: about 3 years ago

10.1038/s41598-019-52268-5

Gene expression profile of Aedes aegypti females in courtship and mating
Cited by: 11
Author(s): Diego Peres Alonso, Melina Campos, Heitor Troca, Rafael Kunii, Frédéric Tripet, Paulo Eduardo Martins Ribolla
Software Mentions: 2
Published: about 5 years ago

10.1186/s12967-018-1766-2

Single cell sequencing reveals gene expression signatures associated with bone marrow stromal cell subpopulations and time in culture
Cited by: 23
Author(s): Shutong Liu, David F. Stroncek, Yingdong Zhao, Victoria Chen, Rongye Shi, Jinguo Chen, Jiaqiang Ren, Hui Liu, Hee Joon Bae, Steven L. Highfill, Ping Jin
Software Mentions: 1
Published: almost 6 years ago

Ecosyste.ms: Papers

Projects: bioconductor: pcaExplorer

Papers Mentioning pcaExplorer 26