Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12864-021-07742-8

https://doi.org/10.1186/s12864-021-07742-8

Triple RNA-Seq characterizes aphid gene expression in response to infection with unequally virulent strains of the endosymbiont Hamiltonella defensa

Cited by: 5
Author(s): Heidi Kaech, Alice B. Dennis, Christoph Vorburger
Published: over 3 years ago

Software Mentions 10

bioconductor: pcaExplorer
Interactive Visualization of RNA-seq Data Using a Principal Components Approach
Papers that mentioned: 26
bioconductor: tximport
Import and summarize transcript-level estimates for transcript- and gene-level analysis
Papers that mentioned: 367
cran: cluster
"Finding Groups in Data": Cluster Analysis Extended Rousseeuw et al.
Papers that mentioned: 416
cran: clustsig
Significant Cluster Analysis
Papers that mentioned: 20
cran: flashClust
Implementation of optimal hierarchical clustering
Papers that mentioned: 74
cran: UpSetR
A More Scalable Alternative to Venn and Euler Diagrams for Visualizing Intersecting Sets
Papers that mentioned: 319
cran: WGCNA
Weighted Correlation Network Analysis
Papers that mentioned: 3,479
pypi: blast
a simple web-based, multi-platform music/mp3 player written in python, HTML/CSS and javascript
Papers that mentioned: 1,819
pypi: cluster

Papers that mentioned: 416
pypi: diamond
Smart data producer for graphite graphing package
Papers that mentioned: 68