cran: flashClust | Projects | Ecosyste.ms: Papers

10.1186/s12859-021-04028-4

scConsensus: combining supervised and unsupervised clustering for cell type identification in single-cell RNA sequencing data
Cited by: 12
Author(s): Bobby Ranjan, Florian Schmidt, Wenjie Sun, Jinyu Park, Mohammad Amin Honardoost, Joanna H.J. Tan, Nirmala Arul Rayan, Shyam Prabhakar
Software Mentions: 12
Published: over 3 years ago

10.1186/s12864-021-07742-8

Triple RNA-Seq characterizes aphid gene expression in response to infection with unequally virulent strains of the endosymbiont Hamiltonella defensa
Cited by: 5
Author(s): Heidi Kaech, Alice B. Dennis, Christoph Vorburger
Software Mentions: 10
Published: over 3 years ago

10.1371/journal.pone.0256016

Integration of chronological omics data reveals mitochondrial regulatory mechanisms during the development of hepatocellular carcinoma
Cited by: 2
Author(s): J. Noé García-Chávez, Verónica Rocío Vásquez-Garzón, Mercedes G. López, Saúl Villa‐Treviño, Rafaél Montiel
Software Mentions: 10
Published: over 3 years ago

10.3390/cells10050977

Identification of 15 lncRNAs Signature for Predicting Survival Benefit of Advanced Melanoma Patients Treated with Anti-PD-1 Monotherapy
Cited by: 22
Author(s): Jianguo Zhou, Bo Liang, Jianguo Liu, Sanli Jin, Sisi He, Benjamin Frey, Ning Gu, Rainer Fietkau, Markus Hecht, Hu Ma, Udo S. Gaipl
Software Mentions: 10
Published: over 3 years ago

10.1186/s40478-019-0797-0

Extensive transcriptomic study emphasizes importance of vesicular transport in C9orf72 expansion carriers
Cited by: 36
Author(s): Dennis W. Dickson, Matthew Baker, Jazmyne L. Jackson, Mariely DeJesus-Hernandez, Ni Cole A. Finch, Shulan Tian, Michael G. Heckman, Cyril Pottier, Tania F. Gendron, Melissa E. Murray, Yingxue Ren, Joseph S. Reddy, Neill R. Graff‐Radford, Bradley F. Boeve, Ronald C. Petersen, David S. Knopman, Keith A. Josephs, Leonard Petrucelli, Björn Oskarsson, John W. Sheppard, Yan W. Asmann, Rosa Rademakers, Marka van Blitterswijk
Software Mentions: 9
Published: about 5 years ago

10.1042/BSR20200935

WGCNA reveals key gene modules regulated by the combined treatment of colon cancer with PHY906 and CPT11
Cited by: 21
Author(s): Shuqin Xing, Yafei Wang, Kaiwen Hu, Fen Wang, Tao Sun, Quanwang Li
Software Mentions: 7
Published: about 4 years ago

10.1002/2211-5463.13057

Long noncoding RNAs implicated in embryonic development in Ybx1 knockout zebrafish
Cited by: 5
Author(s): Chen Huang, Bo Zhu, Dongliang Leng, Wei Ge, Xiaohua Douglas Zhang
Software Mentions: 6
Published: over 3 years ago

10.7717/peerj.8505

Identification and validation of key modules and hub genes associated with the pathological stage of oral squamous cell carcinoma by weighted gene co-expression network analysis
Cited by: 10
Author(s): Xuegang Hu, Genban Sun, Zhiqiang Shi, Hui Ni, Shan Jiang
Software Mentions: 6
Published: almost 5 years ago

10.1186/s12864-018-4738-2

Functional signaling and gene regulatory networks between the oocyte and the surrounding cumulus cells
Cited by: 43
Author(s): Fernando H. Biase, Katelyn M. Kimble
Software Mentions: 6
Published: over 6 years ago

10.1534/g3.118.200017

Environmental and Evolutionary Drivers of the Modular Gene Regulatory Network Underlying Phenotypic Plasticity for Stress Resistance in the Nematode Caenorhabditis remanei
Cited by: 20
Author(s): Kristin L. Sikkink, Rose M. Reynolds, Catherine M. Ituarte, William A. Cresko, Patrick C. Phillips
Software Mentions: 6
Published: over 5 years ago

10.3389/fphys.2019.01370

A Dynamic Transcriptional Analysis Reveals IL-6 Axis as a Prominent Mediator of Surgical Acute Response in Non-ischemic Mouse Heart
Cited by: 1
Author(s): Sally Badawi, Alexandre Paccalet, Zeina Harhous, Bruno Pillot, Lionel Augeul, Fabien Van Coppenolle, Joël Lachuer, Mazen Kurdi, Claire Crola Da Silva, Michel Ovize, Gabriel Bidaux
Software Mentions: 6
Published: about 5 years ago

10.1038/s41598-020-77318-1

Improving existing analysis pipeline to identify and analyze cancer driver genes using multi-omics data
Cited by: 9
Author(s): Quang-Huy Nguyen, Duc-Hau Le
Software Mentions: 5
Published: almost 4 years ago

10.1371/journal.pone.0118731

Discovery of Core Biotic Stress Responsive Genes in Arabidopsis by Weighted Gene Co-Expression Network Analysis
Cited by: 77
Author(s): Katherine C. H. Amrine, Bárbara Blanco-Ulate, Dario Cantu
Software Mentions: 5
Published: over 9 years ago

10.3390/jcm10163520

An Integrative Systems Biology Approach Identifies Molecular Signatures Associated with Gallbladder Cancer Pathogenesis
Cited by: 3
Author(s): Nabanita Roy, Mrinmoy Kshattry, Subhrangsu S. Mandal, Mohit Kumar Jolly, Dhruba K. Bhattacharyya, Pankaj Barah
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pcbi.1004847

Assessing Concordance of Drug-Induced Transcriptional Response in Rodent Liver and Cultured Hepatocytes
Cited by: 40
Author(s): Jeffrey J. Sutherland, Robert A. Jolly, Keith M. Goldstein, James Stevens
Software Mentions: 5
Published: over 8 years ago

10.1038/s41598-021-82951-5

Machine intelligence identifies soluble TNFa as a therapeutic target for spinal cord injury
Cited by: 10
Author(s): J. Russell Huie, Adam R. Ferguson, Nikos Kyritsis, Jonathan Z. Pan, Karen Irvine, Jessica L. Nielson, Patrick G. Schupp, Michael C. Oldham, John C. Gensel, Amity Lin, Mark R. Segal, Rajiv R. Ratan, Jacqueline C. Bresnahan, Michael S. Beattie
Software Mentions: 5
Published: almost 4 years ago

10.1186/s12864-020-6467-6

Diverse biological processes coordinate the transcriptional response to nutritional changes in a Drosophila melanogaster multiparent population
Cited by: 8
Author(s): Enoch Ng’oma, Patricka A. Williams-Simon, Aniqa Rahman, King Eg
Software Mentions: 4
Published: almost 5 years ago

10.3389/fimmu.2021.716075

Transcriptome Analysis of Peripheral Blood Mononuclear Cells Reveals Distinct Immune Response in Asymptomatic and Re-Detectable Positive COVID-19 Patients
Cited by: 10
Author(s): Jiaqi Zhang, Dan Lin, Kui Li, Xiangming Ding, Lin Li, Yuntao Liu, Dongdong Liu, Jing Lin, Xiangyun Teng, Yizhe Li, Ming Liu, Jian Shen, Xiaodan Wang, He Dan, Yawei Shi, Dawei Wang, Jianhua Xu
Software Mentions: 4
Published: over 3 years ago

10.3389/fmolb.2021.622643

Immune-Inhibitory Gene Expression is Positively Correlated with Overall Immune Activity and Predicts Increased Survival Probability of Cervical and Head and Neck Cancer Patients
Cited by: 10
Author(s): Megha Budhwani, Gavin Turrell, Meihua Yu, Ian H. Frazer, Ahmed M. Mehdi, Janin Chandra
Software Mentions: 4
Published: over 3 years ago

10.3389/fonc.2021.634569

Sharp Downregulation of Hub Genes Associated With the Pathogenesis of Breast Cancer From Ductal Carcinoma In Situ to Invasive Ductal Carcinoma
Cited by: 4
Author(s): Yao Wang, Faqing Liang, Yuting Zhou, Juanjuan Qiu, Qing Lv, Zhenggui Du
Software Mentions: 4
Published: over 3 years ago

10.1186/1471-2105-13-S10-S7

A systematic comparison of genome-scale clustering algorithms
Cited by: 45
Author(s): Jeremy J. Jay, John D. Eblen, Yun Zhang, Mikael Benson, Andy D. Perkins, Arnold M. Saxton, Brynn H. Voy, Elissa J. Chesler, Michael A. Langston
Software Mentions: 4
Published: over 12 years ago

10.1186/s40104-021-00616-9

Identification of key genes affecting porcine fat deposition based on co-expression network analysis of weighted genes
Cited by: 17
Author(s): Kai Xing, Huatao Liu, Fengxia Zhang, Yibing Liu, Yong Shi, Xiangdong Ding, Chuduan Wang
Software Mentions: 4
Published: over 3 years ago

10.1155/2020/7594098

Development and Validation of an Immune-Related Prognostic Signature for Ovarian Cancer Based on Weighted Gene Coexpression Network Analysis
Cited by: 6
Author(s): Yuanyuan An, Qing Yang
Software Mentions: 4
Published: almost 4 years ago

10.1038/s41598-018-26854-y

Transcriptome analysis in Hevea brasiliensis latex revealed changes in hormone signalling pathways during ethephon stimulation and consequent Tapping Panel Dryness
Cited by: 23
Author(s): Pascal Montoro, Shizhou Wu, Bénédicte Favreau, Eva Herlinawati, Cécile Labrune, Marie‐Laure Martin‐Magniette, Stéphanie Pointet, Maryannick Rio, Julie Leclercq, Sigit Ismawanto, Kuswanhadi
Software Mentions: 4
Published: over 6 years ago

10.1042/BSR20211280

Identification of hub genes in colorectal cancer based on weighted gene co-expression network analysis and clinical data from The Cancer Genome Atlas
Cited by: 23
Author(s): Yu Zhang, Jia Luo, Zhe Liu, Xudong Li, Ying Ma, Bohang Zhang, Yuxuan Chen, Xiaofeng Li, Zhi-Guo Feng, Ningning Yang, Dayun Feng, Lei Wang, Xiu–Peng Song
Software Mentions: 4
Published: over 3 years ago

10.1002/cam4.2969

Identification of hub methylated‐CpG sites and associated genes in oral squamous cell carcinoma
Cited by: 14
Author(s): Yuxin Dai, Qiao‐Li Lv, Tingting Qi, Jian Qu, Hongli Ni, Yongkang Liao, Peng Liu, Qiang Qu
Software Mentions: 4
Published: over 4 years ago

10.1186/s13071-021-04597-6

Gene co-expression network analysis of Trypanosoma brucei in tsetse fly vector
Cited by: 5
Author(s): Kennedy W. Mwangi, Rosaline W. Macharia, Joel L. Bargul
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pone.0149171

RNA-Seq Reveals the Angiogenesis Diversity between the Fetal and Adults Bone Mesenchyme Stem Cell
Cited by: 2
Author(s): Xin Zhao, Yingmin Han, Yu Liang, Chao Nie, Jian Wang
Software Mentions: 4
Published: over 8 years ago

10.1038/s41598-021-86742-w

Transcriptional circuitry atlas of genetic diverse unstimulated murine and human macrophages define disparity in population-wide innate immunity
Cited by: 5
Author(s): Bharat Mishra, Mohammad Athar, M. Shahid Mukhtar
Software Mentions: 3
Published: over 3 years ago

10.1186/s12957-018-1381-y

Identification of key gene modules for human osteosarcoma by co-expression analysis
Cited by: 19
Author(s): Jing Zhang, Qing Lan, Jiasheng Lin
Software Mentions: 3
Published: over 6 years ago

10.1186/s12870-021-02893-y

Composition and diversity of bacterial communities in the rhizosphere of the Chinese medicinal herb Dendrobium
Cited by: 32
Author(s): Jiajia Zuo, Mengting Zu, Lei Liu, Xiaomei Song, Yingdan Yuan
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-019-50148-6

Gene co-expression network analysis reveals key potential gene modules in utero-vaginal junction associated with duration of fertility trait of breeder hens
Cited by: 1
Author(s): Lantao Gu, Ruoxi Jing, Yanzhang Gong, Mei Yu, Abdelmotaleb A. Elokil, Shijun Li
Software Mentions: 3
Published: about 5 years ago

10.7717/peerj.8611

Co-expression network analysis reveals the pivotal role of mitochondrial dysfunction and interferon signature in juvenile dermatomyositis
Cited by: 7
Author(s): Danli Zhong, Caimei Wu, Jingjing Bai, Duanfu Xu, Xiaofeng Zeng, Qian Wang
Software Mentions: 3
Published: almost 5 years ago

10.7717/peerj.8907

Weighted gene correlation network analysis reveals novel biomarkers associated with mesenchymal stromal cell differentiation in early phase
Cited by: 9
Author(s): Bin Xiao, Guozhu Wang, Weiwei Li
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pbio.3000046

Fine-tuned adaptation of embryo–endometrium pairs at implantation revealed by transcriptome analyses in Bos taurus
Cited by: 14
Author(s): Fernando H. Biase, Isabelle Hue, Sarah Dickinson, Florence Jaffrézic, Dénis Laloë, Harris A. Lewin, Olivier Sandra
Software Mentions: 3
Published: over 5 years ago

10.3390/ijms21030861

Comparative Transcriptome Analysis of Different Dendrobium Species Reveals Active Ingredients-Related Genes and Pathways
Cited by: 21
Author(s): Yingdan Yuan, Bo Zhang, Xinggang Tang, Jinchi Zhang, Jie Lin
Software Mentions: 3
Published: almost 5 years ago

10.1186/1471-2164-13-S6-S14

Methods for high-throughput MethylCap-Seq data analysis
Cited by: 16
Author(s): Blanca Rodriguez, David Frankhouser, Mark W. Murphy, Michael Trimarchi, Hok Hei Tam, John Curfman, Rita Huang, Michael W.Y. Chan, Hung Cheng Lai, Deval Parikh, Bryan Ball, Sebastian Schwind, William Blum, Guido Marcucci, Pearlly S. Yan, Ralf Bundschuh
Software Mentions: 3
Published: about 12 years ago

10.1371/journal.pone.0087499

Analysis of Global Gene Expression in Brachypodium distachyon Reveals Extensive Network Plasticity in Response to Abiotic Stress
Cited by: 80
Author(s): Henry D. Priest, Samuel E. Fox, Erik R. Rowley, Jessica R. Murray, Todd P. Michael, Todd C. Mockler
Software Mentions: 3
Published: almost 11 years ago

10.3389/fgene.2020.00542

Identification of Four Potential Biomarkers Associated With Coronary Artery Disease in Non-diabetic Patients by Gene Co-expression Network Analysis
Cited by: 12
Author(s): Min Jiao, Jingtian Li, Quan Zhang, Xiufeng Xu, Ruidong Li, Peikang Dong, Chun Meng, Yang Li, Lijuan Wang, Wanpeng Qi, Kang Kai, Hongjie Wang, Tao Wang
Software Mentions: 3
Published: over 4 years ago

10.1111/acel.12358

The effects of age and dietary restriction on the tissue‐specific metabolome of <scp>D</scp> rosophila 
Cited by: 63
Author(s): Matthew J. Laye, ViLinh Tran, Dean P. Jones, Pankaj Kapahi, Daniel E. L. Promislow
Software Mentions: 3
Published: over 9 years ago

10.3389/fphys.2020.612036

Impact of Ringer’s Solution Challenge Stress to Immunostimulatory Experiment, Insights From Japanese Flounder
Cited by: 1
Author(s): Jinxiang Liu, Zan Li, Yujue Wang, Quanqi Zhang
Software Mentions: 3
Published: almost 4 years ago

10.1186/s12935-021-01929-5

ESR1 as a recurrence-related gene in intrahepatic cholangiocarcinoma: a weighted gene coexpression network analysis
Cited by: 3
Author(s): Fengwei Li, Qinjunjie Chen, Yang Yang, Meihui Li, Lei Zhang, Zhenlin Yan, Junjie Zhang, Kui Wang
Software Mentions: 3
Published: over 3 years ago

10.1042/BSR20181925

Co-expression of key gene modules and pathways of human breast cancer cell lines
Cited by: 13
Author(s): Yadong Wu, Lin Feng, Siyang Luo, Xinhai Yin, He Dan, Jianguo Liu, Zhao-hui Yue, Jukun Song
Software Mentions: 3
Published: over 5 years ago

10.1186/s13104-015-1141-9

Dysregulated mechanisms underlying Duchenne muscular dystrophy from co-expression network preservation analysis
Cited by: 15
Author(s): Kavitha Mukund, Shankar Subramaniam
Software Mentions: 3
Published: over 9 years ago

10.1155/2021/9957908

Citrate Synthase and OGDH as Potential Biomarkers of Atherosclerosis under Chronic Stress
Cited by: 5
Author(s): Ling‐Bing Meng, Gaifeng Hu, Mengjie Shan, Yuanmeng Zhang, Zemou Yu, Yun-Qing Liu, Hongxuan Xu, Li Wang, Tao Gong, Deping Liu
Software Mentions: 2
Published: about 3 years ago

10.18632/aging.102419

Characterization of long non-coding RNA and messenger RNA profiles in laryngeal cancer by weighted gene co-expression network analysis
Cited by: 26
Author(s): Huanhuan Liu, Yi Sun, Huan Tian, Xiaolian Xiao, Jiaqi Zhang, Yongzhen Wang, Fang Yu
Software Mentions: 2
Published: about 5 years ago

10.18632/aging.202440

High expression of vinculin predicts poor prognosis and distant metastasis and associates with influencing tumor-associated NK cell infiltration and epithelial-mesenchymal transition in gastric cancer
Cited by: 14
Author(s): Huafu Li, Chunming Wang, Linxiang Lan, Axel Behrens, Mona Tomaschko, Josue Ruiz, Shan Qiao, Guangying Zhao, Yuan Cheng, Xing Xiao, Bo Li, Le-Ping Yan, Wei Wu, Wuguo Li, Junzong Chen, Yulong He, Changhua Zhang
Software Mentions: 2
Published: almost 4 years ago

10.1093/alcalc/agw105

Typology and Dynamics of Heavier Drinking Styles in Great Britain: 1978–2010
Cited by: 1
Author(s): Robin C. Purshouse, Alan Brennan, Daniel Moyo, James Nicholls, Paul Norman
Software Mentions: 2
Published: almost 8 years ago

10.3390/antibiotics10020097

Weighted Gene Co-Expression Network Analysis Identifies Key Modules and Hub Genes Associated with Mycobacterial Infection of Human Macrophages
Cited by: 7
Author(s): Lu Lu, Ranlei Wei, Sanjib Bhakta, Simon J. Waddell, Ester Boix
Software Mentions: 2
Published: almost 4 years ago

10.3390/antibiotics10070792

Correction: Lu et al. Weighted Gene Co-Expression Network Analysis Identifies Key Modules and Hub Genes Associated with Mycobacterial Infection of Human Macrophages. Antibiotics 2021, 10, 97
Cited by: 1
Author(s): Lu Lu, Ranlei Wei, Sanjib Bhakta, Simon J. Waddell, Ester Boix
Software Mentions: 2
Published: over 3 years ago

10.1186/1471-2407-11-230

Protein expression based multimarker analysis of breast cancer samples
Cited by: 35
Author(s): Angela P. Presson, Nam Yoon, Lora Bagryanova, Vei Mah, Mohammad Alavi, Erin L. Maresh, Ayyappan K. Rajasekaran, Lee Goodglick, David Chia, Steve Horvath
Software Mentions: 2
Published: over 13 years ago

10.1186/s12864-017-3558-0

The abundance of homoeologue transcripts is disrupted by hybridization and is partially restored by genome doubling in synthetic hexaploid wheat
Cited by: 30
Author(s): Ming Hao, Aili Li, Tao Shi, Jiangtao Luo, Lianquan Zhang, Xuechuan Zhang, Shunzong Ning, Zhongwei Yuan, Deying Zeng, Xingchen Kong, Xiaolong Li, Hongkun Zheng, Xiujin Lan, Huaigang Zhang, Youliang Zheng, Long Mao, Dengcai Liu
Software Mentions: 2
Published: almost 8 years ago

10.1186/s12918-018-0644-0

Metabolomics of mammalian brain reveals regional differences
Cited by: 30
Author(s): William T. Choi, Mehmet Tosun, Hyun-Hwan Jeong, Cemal Karakas, Fatih Semerci, Zhandong Liu, Mirjana Maletić-Savatić
Software Mentions: 2
Published: almost 6 years ago

10.1242/bio.016402

Co-expression networks in generation of induced pluripotent stem cells
Cited by: 3
Author(s): Sharan Paul, Lance Pflieger, Warunee Dansithong, Karla P. Figueroa, Fuying Gao, Giovanni Coppola, Stefan M. Pulst
Software Mentions: 2
Published: almost 9 years ago

10.1155/2020/9502820

Integrative Analysis of MAPK14 as a Potential Biomarker for Cardioembolic Stroke
Cited by: 1
Author(s): Li Zhao, Li Xu, Qingxiu Wang
Software Mentions: 2
Published: over 4 years ago

10.1042/BSR20202044

Identification of key gene modules and genes in colorectal cancer by co-expression analysis weighted gene co-expression network analysis
Cited by: 7
Author(s): Peng Wang, Huaixin Zheng, Jiayu Zhang, Yashu Wang, Pingping Li, Xuan Xing, Qianru Li, Ying Du
Software Mentions: 2
Published: about 4 years ago

10.1186/s12935-018-0703-z

Identification of biomarkers of chromophobe renal cell carcinoma by weighted gene co-expression network analysis
Cited by: 17
Author(s): Xiaomao Yin, Jianfeng Wang, Jin Zhang
Software Mentions: 2
Published: almost 6 years ago

10.3389/fcell.2021.702974

Heme Oxygenase-1 at the Nexus of Endothelial Cell Fate Decision Under Oxidative Stress
Cited by: 3
Author(s): Sindhushree Raghunandan, Srinivasan Ramachandran, Eugene Ke, Yifei Miao, Ratnesh Lal, Zhen Bouman Chen, Shankar Subramaniam
Software Mentions: 2
Published: about 3 years ago

10.3389/fendo.2021.573824

Statin Treatment Induced a Lipogenic Expression Hierarchical Network Centered by SREBF2 in the Liver
Cited by: 1
Author(s): Shiyu Song, Mengyuan Niu, Li Qiao, Lei Wang, Haiyan Min, Yunyan Peng, Hongwei Wang, Qian Gao
Software Mentions: 2
Published: over 3 years ago

10.3389/fgene.2020.00039

WGCNA Co-Expression Network Analysis Reveals ILF3-AS1 Functions as a CeRNA to Regulate PTBP1 Expression by Sponging miR-29a in Gastric Cancer
Cited by: 23
Author(s): Zhenhu Ren, Gao-Pan Shang, Kun Wu, Chuanyu Hu, Tong Ji
Software Mentions: 2
Published: almost 5 years ago

10.3389/fgene.2020.600097

Integrative Analysis of Genomics and Transcriptome Data to Identify Regulation Networks in Female Osteoporosis
Cited by: 5
Author(s): Xianzuo Zhang, Kun Chen, Xiaoxuan Chen, Nikolaos Kourkoumelis, Guoyuan Li, Bing Wang, Zhu Chen
Software Mentions: 2
Published: almost 4 years ago

10.3389/fphys.2019.01081

Identification of Hub Genes and Key Pathways Associated With Bipolar Disorder Based on Weighted Gene Co-expression Network Analysis
Cited by: 70
Author(s): Yang Liu, Hao Gu, Jie Zhu, Yu‐Ming Niu, Zhang Chao, Guangling Guo
Software Mentions: 2
Published: over 5 years ago

10.3390/genes9020092

Identification of Key Pathways and Genes in the Dynamic Progression of HCC Based on WGCNA
Cited by: 115
Author(s): Yin Li, Zhihui Cai, Baoan Zhu, Chi Xu
Software Mentions: 2
Published: almost 7 years ago

10.1111/jcmm.16647

PAICS is related to glioma grade and can promote glioma growth and migration
Cited by: 5
Author(s): Botao Du, Zheying Zhang, Wenyu Di, Wenzhong Xu, Lei Yang, Shitao Zhang, Guoyang He, Rui Yang, Maode Wang
Software Mentions: 2
Published: over 3 years ago

10.1038/srep10237

VoICE: A semi-automated pipeline for standardizing vocal analysis across models
Cited by: 61
Author(s): Zachary Daniel Burkett, Nancy F. Day, Olga Peñagarikano, Daniel H. Geschwind, Stephanie A. White
Software Mentions: 2
Published: over 9 years ago

10.1038/s41398-017-0044-z

A polygenic score for schizophrenia predicts glycemic control
Cited by: 14
Author(s): Han Cao, Junfang Chen, Andreas Meyer‐Lindenberg, Emanuel Schwarz
Software Mentions: 2
Published: almost 7 years ago

10.1128/mSphere.00021-15

Antibiotic Resistance in Animal and Environmental Samples Associated with Small-Scale Poultry Farming in Northwestern Ecuador
Cited by: 55
Author(s): Nikolay P. Braykov, Joseph N. S. Eisenberg, Marissa K. Grossman, Lixin Zhang, Karla Vasco, William Cevallos, Diana Muñoz, Andrés Acevedo, Kara A Moser, Carl F. Marrs, Betsy Foxman, James Trostle, Gabriel Trueba, Karen Lévy
Software Mentions: 2
Published: over 8 years ago

10.1093/hmg/ddaa072

ALS-associated genes in SCA2 mouse spinal cord transcriptomes
Cited by: 14
Author(s): Daniel R. Scoles, Warunee Dansithong, Lance Pflieger, Sharan Paul, Mandi Gandelman, Karla P. Figueroa, Frank Rigo, C. Frank Bennett, Stefan M. Pulst
Software Mentions: 2
Published: over 4 years ago

10.7554/eLife.02439

Distinct and separable roles for EZH2 in neurogenic astroglia
Cited by: 57
Author(s): William W. Hwang, Ryan Salinas, Jason J. Siu, Kevin W. Kelley, Ryan N. Delgado, Mercedes F. Paredes, Arturo Alvarez-Buylla, Michael C. Oldham, Daniel A. Lim
Software Mentions: 2
Published: over 10 years ago

10.7554/eLife.24712

Resolving stem and progenitor cells in the adult mouse incisor through gene co-expression analysis
Cited by: 43
Author(s): Kerstin Seidel, Pauline Marangoni, Cynthia Tang, B. Houshmand, Wenjuan Du, Richard L. Maas, Stephen A. Murray, Michael C. Oldham, Ophir D. Klein
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-019-46690-y

Activity-dependent changes in synaptic protein complex composition are consistent in different detergents despite differential solubility
Cited by: 13
Author(s): Jonathan D. Lautz, Edward P. Gniffke, Emily Brown, Karen B. Immendorf, Ryan D. Mendel, Stephen Smith
Software Mentions: 1
Published: over 5 years ago

10.1186/s12967-020-02502-w

High expression of MKK3 is associated with worse clinical outcomes in African American breast cancer patients
Cited by: 16
Author(s): Xuan Yang, Mohamed Amgad, Lee Cooper, Yuhong Du, Haian Fu, Andrey A. Ivanov
Software Mentions: 1
Published: about 4 years ago

10.1186/s12985-021-01643-8

Decoding pathogenesis factors involved in the progression of ATLL or HAM/TSP after infection by HTLV-1 through a systems virology study
Cited by: 11
Author(s): Mohadeseh Zarei Ghobadi, Rahman Emamzadeh, Majid Teymoori‐Rad, Sayed‐Hamidreza Mozhgani
Software Mentions: 1
Published: about 3 years ago

Projects: cran: flashClust

Papers Mentioning flashClust 74