Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pone.0256016

https://doi.org/10.1371/journal.pone.0256016

Integration of chronological omics data reveals mitochondrial regulatory mechanisms during the development of hepatocellular carcinoma

Cited by: 2
Author(s): J. Noé García-Chávez, Verónica Rocío Vásquez-Garzón, Mercedes G. López, Saúl Villa‐Treviño, Rafaél Montiel
Published: over 3 years ago

Software Mentions 10

bioconductor: clusterProfiler
A universal enrichment tool for interpreting omics data
Papers that mentioned: 2,223
bioconductor: ComplexHeatmap
Make Complex Heatmaps
Papers that mentioned: 565
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
bioconductor: MSnbase
Base Functions and Classes for Mass Spectrometry and Proteomics
Papers that mentioned: 24
bioconductor: oligo
Preprocessing tools for oligonucleotide arrays
Papers that mentioned: 204
bioconductor: vsn
Variance stabilization and calibration for microarray data
Papers that mentioned: 91
cran: flashClust
Implementation of optimal hierarchical clustering
Papers that mentioned: 74
cran: metap
Meta-Analysis of Significance Values
Papers that mentioned: 15
cran: WGCNA
Weighted Correlation Network Analysis
Papers that mentioned: 3,479
pypi: oligo
UNOFFICIAL Python client for i-DE
Papers that mentioned: 204