pypi: diamond | Projects | Ecosyste.ms: Papers

10.1099/mgen.0.000499

A comprehensive and high-quality collection of Escherichia coli genomes and their genes
Cited by: 32
Author(s): Gal Horesh, Grace A. Blackwell, Gerry Tonkin‐Hill, Jukka Corander, Eva Heinz, Nicholas R. Thomson
Software Mentions: 12
Published: almost 4 years ago

10.3389/fmicb.2017.00682

Comparative Genomic Analysis of the Class Epsilonproteobacteria and Proposed Reclassification to Epsilonbacteraeota (phyl. nov.)
Cited by: 314
Author(s): David W. Waite, Inka Vanwonterghem, Christian Rinke, Donovan H. Parks, Ying Zhang, Ken Takai, Stefan M. Sievert, Jörg Simon, Barbara J. Campbell, Thomas E. Hanson, Tanja Woyke, Martin G. Klotz, Philip Hugenholtz
Software Mentions: 11
Published: over 7 years ago

10.1371/journal.pone.0169662

Comparing and Evaluating Metagenome Assembly Tools from a Microbiologist’s Perspective - Not Only Size Matters!
Cited by: 171
Author(s): John Vollmers, Sandra Wiegand, Anne‐Kristin Kaster
Software Mentions: 11
Published: almost 8 years ago

10.1186/s12864-021-07742-8

Triple RNA-Seq characterizes aphid gene expression in response to infection with unequally virulent strains of the endosymbiont Hamiltonella defensa
Cited by: 5
Author(s): Heidi Kaech, Alice B. Dennis, Christoph Vorburger
Software Mentions: 10
Published: over 3 years ago

10.1186/s12862-021-01806-9

The diversity of opsins in Lake Baikal amphipods (Amphipoda: Gammaridae)
Cited by: 8
Author(s): Polina Drozdova, Alena Kizenko, Alexandra Saranchina, Anton Gurkov, Maria Firulyova, E. B. Govorukhina, Maxim A. Timofeyev
Software Mentions: 9
Published: over 3 years ago

10.1038/s41598-019-45193-0

Description of strongly heat-inducible heat shock protein 70 transcripts from Baikal endemic amphipods
Cited by: 7
Author(s): Polina Drozdova, Daria Bedulina, Ekaterina Madyarova, Lorena Rivarola-Duarte, S Schreiber, Peter F. Stadler, Till Luckenbach, Maxim A. Timofeyev
Software Mentions: 8
Published: over 5 years ago

10.3390/microorganisms9071368

Insights into Autotrophic Activities and Carbon Flow in Iron-Rich Pelagic Aggregates (Iron Snow)
Cited by: 0
Author(s): Qianqian Li, Rebecca E. Cooper, Carl‐Eric Wegner, Martin Taubert, Nico Jehmlich, Martin von Bergen, Kirsten Küsel
Software Mentions: 7
Published: over 3 years ago

10.1128/mSphere.00737-20

Comparative Genomics Analyses of Lifestyle Transitions at the Origin of an Invasive Fungal Pathogen in the Genus Cryphonectria
Cited by: 16
Author(s): Lea Stauber, Simone Prospero, Daniel Croll
Software Mentions: 7
Published: about 4 years ago

10.1186/s13059-021-02427-7

Genomic diversity and ecology of human-associated Akkermansia species in the gut microbiome revealed by extensive metagenomic assembly
Cited by: 56
Author(s): Nicolai Karcher, Eleonora Nigro, Michal Punčochář, Aitor Blanco-Míguez, Matteo Ciciani, Paolo Manghi, Moreno Zolfo, Fabio Cumbo, Serena Manara, Davide Golzato, Anna Cereseto, Manimozhiyan Arumugam, Thi Phuong Nam Bui, Hanne L. P. Tytgat, Mireia Vallès-Colomer, Willem M. de Vos, Nicola Segata
Software Mentions: 7
Published: over 3 years ago

10.7717/peerj.6902

Optimizing de novo genome assembly from PCR-amplified metagenomes
Cited by: 26
Author(s): Simon Roux, Gareth Trubl, Danielle Goudeau, Nandita Nath, Estelle Couradeau, Nathan A. Ahlgren, Yuanchao Zhan, David Marsan, Feng Chen, Jed A. Fuhrman, Trent Northen, Matthew B. Sullivan, V. I. Rich, Rex R. Malmstrom, Emiley A. Eloe‐Fadrosh
Software Mentions: 7
Published: over 5 years ago

10.1111/mec.14860

Host‐derived population genomics data provides insights into bacterial and diatom composition of the killer whale skin
Cited by: 43
Author(s): Robert Hooper, Jaelle C. Brealey, Tom van der Valk, Antton Alberdi, John W. Durban, Holly Fearnbach, Kelly M. Robertson, Robin W. Baird, M. Bradley Hanson, Paul R. Wade, M. Thomas P. Gilbert, Phillip A. Morin, Jochen B. W. Wolf, Andrew D. Foote, Katerina Guschanski
Software Mentions: 7
Published: about 6 years ago

10.3389/fmicb.2021.689855

Wheat Rhizosphere Metagenome Reveals Newfound Potential Soil Zn-Mobilizing Bacteria Contributing to Cultivars’ Variation in Grain Zn Concentration
Cited by: 5
Author(s): Sen Wang, Zikang Guo, Li Wang, Yan Zhang, Fan Jiang, Xingshu Wang, Lei Yin, Bo Liu, Hangwei Liu, Hengchao Wang, Anqi Wang, Yingxue Ren, Conghui Liu, Wei Fan, Zhaohui Wang
Software Mentions: 6
Published: over 3 years ago

10.1016/j.cell.2019.01.001

Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle
Cited by: 956
Author(s): Edoardo Pasolli, Francesco Asnicar, Serena Manara, Moreno Zolfo, Nicolai Karcher, Federica Armanini, Francesco Beghini, Paolo Manghi, Adrian Tett, Paolo Ghensi, María Carmen Collado, Benjamin L. Rice, Casey DuLong, Xochitl C. Morgan, Christopher D. Golden, Christopher Quince, Curtis Huttenhower, Nicola Segata
Software Mentions: 6
Published: almost 6 years ago

10.1186/s13068-018-1036-9

Genome-resolved metagenomics of sugarcane vinasse bacteria
Cited by: 16
Author(s): Noriko A. Cassman, Késia Silva Lourenço, Janaína Braga do Carmo, Heitor Cantarella, Eiko E. Kuramae
Software Mentions: 6
Published: almost 7 years ago

10.1093/gigascience/giaa137

Long-read assembly of the Brassica napus reference genome Darmor-bzh
Cited by: 50
Author(s): Mathieu Rousseau‐Gueutin, Caroline Belser, Corinne Da Silva, Gautier Richard, Benjamin Istace, Corinne Cruaud, Cyril Falentin, Franz Boideau, Julien Boutte, Régine Delourme, Gwenaëlle Deniot, Stéfan Engelen, Julie Ferreira de Carvalho, Arnaud Lemainque, Loeiz Maillet, Jérôme Morice, Patrick Wincker, Anne‐Marie Chèvre, Jean‐Marc Aury
Software Mentions: 6
Published: about 4 years ago

10.1186/s12864-019-6024-3

Comparison between transcriptomic responses to short-term stress exposures of a common Holarctic and endemic Lake Baikal amphipods
Cited by: 14
Author(s): Polina Drozdova, Lorena Rivarola-Duarte, Daria Bedulina, Denis V. Axenov-Gribanov, S Schreiber, Anton Gurkov, Z. M. Shatilina, Kseniya Vereshchagina, Yulia Lubyaga, Ekaterina Madyarova, Christian Otto, Frank Jühling, Wibke Busch, Lena Jakob, Magnus Lucassen, Franz-Josef Sartoris, Jörg Hackermüller, Steve Hoffmann, Hans‐Otto Pörtner, Till Luckenbach, Maxim A. Timofeyev, Peter F. Stadler
Software Mentions: 5
Published: over 5 years ago

10.7554/eLife.62719

Identical sequences found in distant genomes reveal frequent horizontal transfer across the bacterial domain
Cited by: 14
Author(s): Michael Sheinman, Ksenia Arkhipova, Peter F. Arndt, Bas E. Dutilh, Rutger Hermsen, Florian Massip
Software Mentions: 5
Published: over 3 years ago

10.1186/s13568-021-01250-4

Diversity and metagenome analysis of a hydrocarbon-degrading bacterial consortium from asphalt lakes located in Wietze, Germany
Cited by: 17
Author(s): Michael O. Eze, Grant C. Hose, Simon C. George, Rolf Daniel
Software Mentions: 4
Published: over 3 years ago

10.1186/s12864-020-07132-6

Progress in quickly finding orthologs as reciprocal best hits: comparing blast, last, diamond and MMseqs2
Cited by: 35
Author(s): Julie E. Hernández-Salmerón, Gabriel Moreno‐Hagelsieb
Software Mentions: 4
Published: about 4 years ago

10.3390/microorganisms9091818

Sulfidogenic Microbial Communities of the Uzen High-Temperature Oil Field in Kazakhstan
Cited by: 10
Author(s): Д. Ш. Соколова, Е. М. Семенова, Denis S. Grouzdev, Salimat K. Bidzhieva, Т. Л. Бабич, Н. Г. Лойко, A. P. Ershov, Vitaly V. Kadnikov, Alexey V. Beletsky, Andrey V. Mardanov, Nurlan S. Zhaparov, Т. Н. Назина
Software Mentions: 4
Published: over 3 years ago

10.3390/microorganisms7090315

Dual RNA-Seq Analysis of the Pine-Fusarium circinatum Interaction in Resistant (Pinus tecunumanii) and Susceptible (Pinus patula) Hosts
Cited by: 17
Author(s): Erik A. Visser, Jill L. Wegrzyn, Emma Theodora Steenkamp, Alexander Andrew Myburg, Sanushka Naidoo
Software Mentions: 4
Published: over 5 years ago

10.1111/pbi.13586

The chromosome‐scale reference genome of safflower (Carthamus tinctorius) provides insights into linoleic acid and flavonoid biosynthesis
Cited by: 48
Author(s): Zhihua Wu, Hong Liu, Wei Zhan, Zhichao Yu, Erdai Qin, Shuo Liu, Tiange Yang, Niyan Xiang, Dave Kudrna, Yan Chen, Seung‐Hee Lee, Gang Li, Rod A. Wing, Jiao Liu, Hairong Xiong, Chen Xia, Yongzhong Xing, Jian Wei Zhang, Rui Qin
Software Mentions: 4
Published: over 3 years ago

10.1038/s42003-021-02112-2

Deep ocean metagenomes provide insight into the metabolic architecture of bathypelagic microbial communities
Cited by: 82
Author(s): Silvia G. Acinas, Pablo Sánchez, Guillem Salazar, Francisco M. Cornejo‐Castillo, Marta Sebastián, Ramiro Logares, Marta Royo-Llonch, Lucas Paoli, Shinichi Sunagawa, Pascal Hingamp, Hiroyuki Ogata, Gipsi Lima‐Mendez, Simon Roux, José M. González, Jesús M. Arrieta, Intikhab Álam, Allan Kamau, Chris Bowler, Jeroen Raes, Stéphane Pesant, Peer Bork, Susana Agustı́, Takashi Gojobori, Dolors Vaqué, Matthew B. Sullivan, Carlos Pedrós‐Alió, Ramón Massana, Carlos M. Duarte, Josep M. Gasol
Software Mentions: 4
Published: over 3 years ago

10.1186/s13227-019-0135-4

Comparative transcriptomic analysis of a wing-dimorphic stonefly reveals candidate wing loss genes
Cited by: 16
Author(s): Graham A. McCulloch, Andrew Oliphant, Peter K. Dearden, Andrew J. Veale, Charles W. Ellen, Jonathan M. Waters
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2021.692453

Variation in Accessory Genes Within the Klebsiella oxytoca Species Complex Delineates Monophyletic Members and Simplifies Coherent Genotyping
Cited by: 12
Author(s): Amar Ćosić, Eva Leitner, Christian Petternel, Herbert Galler, Franz F. Reinthaler, Kathrin A. Herzog-Obereder, Elisabeth Tatscher, Sandra Raffl, Gebhard Feierl, Christoph Högenauer, Ellen L. Zechner, Sabine Kienesberger
Software Mentions: 4
Published: over 3 years ago

10.1093/gigascience/giab037

The genome of the venomous snail Lautoconus ventricosus sheds light on the origin of conotoxin diversity
Cited by: 21
Author(s): José Ramón Pardos-Blas, Iker Irisarri, Samuel Abalde, Carlos M.L. Afonso, Manuel Jiménez‐Tenorio, Rafael Zardoya
Software Mentions: 4
Published: over 3 years ago

10.7717/peerj.9387

The level of putative carotenoid-binding proteins determines the body color in two species of endemic Lake Baikal amphipods
Cited by: 4
Author(s): Polina Drozdova, Alexandra Saranchina, M. M. Morgunova, Alena Kizenko, Yulia Lubyaga, Boris Baduev, Maxim A. Timofeyev
Software Mentions: 3
Published: over 4 years ago

10.1186/s13059-019-1923-9

Microbial genomes from non-human primate gut metagenomes expand the primate-associated bacterial tree of life with over 1000 novel species
Cited by: 52
Author(s): Serena Manara, Francesco Asnicar, Francesco Beghini, Davide Bazzani, Fabio Cumbo, Moreno Zolfo, Eleonora Nigro, Nicolai Karcher, Paolo Manghi, Marisa Isabell Metzger, Edoardo Pasolli, Nicola Segata
Software Mentions: 3
Published: about 5 years ago

10.1038/s41598-020-66582-w

Full-length transcript sequencing accelerates the transcriptome research of Gymnocypris namensis, an iconic fish of the Tibetan Plateau
Cited by: 8
Author(s): Hongyu Luo, Haiping Li, Jie Zhang, Bingjie Hu, Chaowei Zhou, Mengbin Xiang, Y J Yang, Mingrui Zhou, Tingsen Jing, Zhe Li, Xinghua Zhou, Guangjun Lv, Wei He, Benhe Zeng, Shijun Xiao, Qinglu Li, Hua Ye
Software Mentions: 3
Published: over 4 years ago

10.3390/insects12090815

Adaptation of Fig Wasps (Agaodinae) to Their Host Revealed by Large-Scale Transcriptomic Data
Cited by: 3
Author(s): Lianfu Chen, Simon T. Segar, Bhanumas Chantarasuwan, Da‐Mien Wong, Rong Wang, Xiaoyong Chen, Hui Yu
Software Mentions: 3
Published: over 3 years ago

10.1186/s12864-020-6507-2

Transcriptomic profiles of Dunaliella salina in response to hypersaline stress
Cited by: 18
Author(s): Qinghua He, Yaqiu Lin, Hong Kee Tan, Yu Zhou, Yan Wen, Jiajia Gan, Ruiwen Li, Qinglian Zhang
Software Mentions: 3
Published: almost 5 years ago

10.1155/2021/9990910

Transcriptome Characterization and Identification of Molecular Markers (SNP, SSR, and Indels) in the Medicinal Plant Sarcandra glabra spp.
Cited by: 5
Author(s): Yanqin Xu, Shuyun Tian, Renqing Li, Xiaofang Huang, Fengqin Li, Fei Ge, Weiping Huang, Yin Zhou
Software Mentions: 3
Published: over 3 years ago

10.1186/s12870-020-02643-6

Interaction of zinc and IAA alleviate aluminum-induced damage on photosystems via promoting proton motive force and reducing proton gradient in alfalfa
Cited by: 10
Author(s): Liantai Su, Jianming Xie, Wuwu Wen, Jiaojiao Li, Peng Zhou, Yuan An
Software Mentions: 2
Published: over 4 years ago

10.3389/fmicb.2015.01409

Similar Microbial Communities Found on Two Distant Seafloor Basalts
Cited by: 10
Author(s): Esther Singer, Lauren S. Chong, John F. Heidelberg, Katrina J. Edwards
Software Mentions: 2
Published: about 9 years ago

10.1099/mgen.0.000455

Comprehensive screening of genomic and metagenomic data reveals a large diversity of tetracycline resistance genes
Cited by: 15
Author(s): Fanny Berglund, Maria Elisabeth Böhm, Anton Martinsson, Stefan Ebmeyer, Tobias Österlund, Anna Johnning, D. G. Joakim Larsson, Erik Kristiansson
Software Mentions: 2
Published: about 4 years ago

10.1099/mgen.0.000560

Niche-specific adaptation of Lactobacillus helveticus strains isolated from malt whisky and dairy fermentations
Cited by: 3
Author(s): Yoshihiko Kido, Shintaro Maeno, Hiroki Tanno, Yuko Kichise, Yuh Shiwa, Akihito Endo
Software Mentions: 2
Published: over 3 years ago

10.3389/fpls.2019.00983

Flavonoid Biosynthesis Is Likely More Susceptible to Elevation and Tree Age Than Other Branch Pathways Involved in Phenylpropanoid Biosynthesis in Ginkgo Leaves
Cited by: 29
Author(s): Kai Zou, Xueduan Liu, Zhenmin Du, Qin Yang, Shaodong Fu, Delong Meng, Wen-Qi Chang, Rui Li, Huaqun Yin, Yili Liang
Software Mentions: 2
Published: over 5 years ago

10.3389/fgene.2020.00355

Molecular Response to High Hydrostatic Pressure: Time-Series Transcriptomic Analysis of Shallow-Water Sea Cucumber Apostichopus japonicus
Cited by: 2
Author(s): Jiawei Chen, Linying Liang, Yanan Li, Hai-Bin Zhang
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0256802

Metabolomics integrated with transcriptomics reveals the distribution of iridoid and crocin metabolic flux in Gardenia jasminoides Ellis
Cited by: 10
Author(s): Yuan Pan, Zhao Xiao, Yu Wang, Jun Tan, Da-Xia Chen
Software Mentions: 2
Published: over 3 years ago

10.3389/fmicb.2019.01248

A Newly Isolated Bacillus subtilis Strain Named WS-1 Inhibited Diarrhea and Death Caused by Pathogenic Escherichia coli in Newborn Piglets
Cited by: 11
Author(s): Yunping Du, Zhichao Xu, Guolian Yu, Wei Liu, Qingfeng Zhou, Dehong Yang, Jie Li, Li Chen, Yun Zhang, Chunyi Xue, Yongchang Cao
Software Mentions: 2
Published: over 5 years ago

10.3390/genes12050704

CmNAC73 Mediates the Formation of Green Color in Chrysanthemum Flowers by Directly Activating the Expression of Chlorophyll Biosynthesis Genes HEMA1 and CRD1
Cited by: 11
Author(s): Luo Jia, Huan Wang, Sijia Chen, Shengjing Ren, Hansen Fu, Ruirui Li, Caiyun Wang
Software Mentions: 2
Published: over 3 years ago

10.1038/s41396-019-0475-z

Horizontally transmitted symbiont populations in deep-sea mussels are genetically isolated
Cited by: 40
Author(s): Devani Romero Picazo, Tal Dagan, Rebecca Ansorge, Jillian M. Petersen, Nicole Dubilier, Anne Kupczok
Software Mentions: 2
Published: over 5 years ago

10.1038/s42003-020-01623-8

Chromosomal scale assembly of parasitic wasp genome reveals symbiotic virus colonization
Cited by: 23
Author(s): Jérémy Gauthier, Hélène Boulain, Joke J.F.A. van Vugt, Lyam Baudry, Emma Persyn, Jean‐Marc Aury, Benjamin Noël, Anthony Bretaudeau, Fabrice Legeai, Sven Warris, Mohamed Amine Chebbi, Géraldine Dubreuil, Bernard Duvic, Natacha Kremer, Philippe Gayral, Karine Musset, Thibaut Josse, Diane Bigot, Christophe Bressac, Sébastien Moreau, Georges Périquet, Myriam Harry, Nicolas Montagné, Isabelle Boulogne, Mahnaz Sabeti-Azad, Martine Maı̈bèche, Thomas Chertemps, Frédérique Hilliou, David Siaussat, Joëlle Amselem, Isabelle Luyten, Claire Capdevielle‐Dulac, Karine Labadie, Bruna Laís Merlin, Valérie Barbe, Jetske G. de Boer, Martial Marbouty, Fernando Luís Cônsoli, Stéphane Dupas, Aurélie Hua-Van, Gaëlle Le Goff, Annie Bézier, Emmanuelle Jacquin‐Joly, James B. Whitfield, L.E.M. Vet, Hans M. Smid, Laure Kaiser, Romain Koszul, Elisabeth Huguet, Elisabeth A. Herniou, Jean Michel Drezen
Software Mentions: 2
Published: almost 4 years ago

10.3390/ani10101866

Multifactorial Causes of Chronic Mortality in Juvenile Sturgeon (Huso huso)
Cited by: 10
Author(s): Sara Ciulli, Enrico Volpe, Rubina Sirri, Giorgia Tura, Francesca Errani, Gianpiero Zamperin, Anna Toffan, Marina Silvi, Andrea Renzi, Miriam Abbadi, Lorena Biasini, Tobia Pretto, Pietro Emmanuele, Antonio Casalini, Giuseppe Sarli, Patrizia Serratore, Oliviero Mordenti, Luciana Mandrioli
Software Mentions: 2
Published: about 4 years ago

10.1038/s41396-019-0554-1

Groundwater cable bacteria conserve energy by sulfur disproportionation
Cited by: 50
Author(s): Hubert Müller, Sviatlana Marozava, Alexander J. Probst, Rainer U. Meckenstock
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-021-90256-w

Microbial sulfate reduction by Desulfovibrio is an important source of hydrogen sulfide from a large swine finishing facility
Cited by: 14
Author(s): О. В. Карначук, Igor I Rusanov, И. А. Панова, M. A. Grigoriev, Viacheslav S. Zyusman, E. A. Latygolets, Maksat K. Kadyrbaev, Eugeny V. Gruzdev, Alexey V. Beletsky, Andrey V. Mardanov, Nikolai V. Pimenov, Nikolai V. Ravin
Software Mentions: 1
Published: over 3 years ago

10.1186/s12862-020-01696-3

Divergent genes in gerbils: prevalence, relation to GC-biased substitution, and phenotypic relevance
Cited by: 5
Author(s): Yichen Dai, Rodrigo Pracana, Peter W.H. Holland
Software Mentions: 1
Published: about 4 years ago

10.1186/s12934-018-0937-4

Development of a production chain from vegetable biowaste to platform chemicals
Cited by: 12
Author(s): Annemarie Schmidt, Gunnar Sturm, Christian Jonas Lapp, Daniel Siebert, Florencia Saravia, Harald Horn, Padma Priya Ravi, Andreas Lemmer, Johannes Gescher
Software Mentions: 1
Published: over 6 years ago

10.3390/v12050574

Unexpected Genetic Diversity of Two Novel Swine MRVs in Italy
Cited by: 3
Author(s): Lara Cavicchio, Luca Tassoni, Gianpiero Zamperin, Mery Campalto, Marilena Carrino, Stefania Leopardi, Paola De Benedictis, Maria Serena Beato
Software Mentions: 1
Published: over 4 years ago

10.3390/v12060606

A Novel Retrovirus (Gunnison’s Prairie Dog Retrovirus) Associated With Thymic Lymphoma in Gunnison’s Prairie Dogs in Colorado, USA
Cited by: 4
Author(s): Molly Butler, Karen A. Griffin, Connie D. Brewster, Marylee Kapuscinski, Mark D. Stenglein, Daniel W. Tripp, Sandra L. Quackenbush, Karen A. Fox
Software Mentions: 1
Published: over 4 years ago

10.7717/peerj.9576

Understanding genomic diversity, pan-genome, and evolution of SARS-CoV-2
Cited by: 19
Author(s): Arohi Parlikar, Kishan Kalia, Shruti Sinha, Sucheta Patnaik, Neeraj Sharma, Sai Gayatri Vemuri, Gaurav Sharma
Software Mentions: 1
Published: over 4 years ago

10.1128/mSystems.00252-19

Comprehensive Analysis Reveals the Evolution and Pathogenicity of Aeromonas , Viewed from Both Single Isolated Species and Microbial Communities
Cited by: 22
Author(s): Chunrong Zhong, Maozhen Han, Pengshuo Yang, Chaoyun Chen, Hui Yu, Lusheng Wang, Kang Ning
Software Mentions: 1
Published: about 5 years ago

10.1080/21655979.2020.1837459

Effects of enzyme + bacteria treatment on growth performance, rumen bacterial diversity, KEGG pathways, and the CAZy spectrum of Tan sheep
Cited by: 6
Author(s): Biwei Jiang, Wang Tian, Yanmin Zhou, Fĕi Li
Software Mentions: 1
Published: almost 5 years ago

10.3389/fendo.2019.00011

Gene Expression Program Underlying Tail Resorption During Thyroid Hormone-Dependent Metamorphosis of the Ornamented Pygmy Frog Microhyla fissipes
Cited by: 11
Author(s): Shouhong Wang, Lusha Liu, Jiongyu Liu, Wei Zhu, Yuta Tanizaki, Longsheng Fu, Lingyu Bao, Yun‐Bo Shi, Jianping Jiang
Software Mentions: 1
Published: almost 6 years ago

10.3389/fgene.2020.570138

HpeNet: Co-expression Network Database for de novo Transcriptome Assembly of Paeonia lactiflora Pall
Cited by: 5
Author(s): Minghao Sheng, Jiajie She, Wenying Xu, Yan Hong, Zhen Su, Xiaodong Zhang
Software Mentions: 1
Published: about 4 years ago

10.3389/fmicb.2020.00162

The Changes in the Frog Gut Microbiome and Its Putative Oxygen-Related Phenotypes Accompanying the Development of Gastrointestinal Complexity and Dietary Shift
Cited by: 21
Author(s): Mengjie Zhang, Hua Chen, Lusha Liu, Liangliang Xu, Xungang Wang, Liming Chang, Qing Chang, Guoqing Lu, Jianping Jiang, Lifeng Zhu
Software Mentions: 1
Published: almost 5 years ago

10.3389/fmicb.2020.00953

Impact of DNA Extraction Method on Variation in Human and Built Environment Microbial Community and Functional Profiles Assessed by Shotgun Metagenomics Sequencing
Cited by: 35
Author(s): Hui-Yu Sui, Ana A. Weil, Edwin Nuwagira, Firdausi Qadri, Edward T. Ryan, Melissa P. Mezzari, Wanda Phipatanakul, Peggy S. Lai
Software Mentions: 1
Published: over 4 years ago

10.1186/s12870-020-02546-6

Comparative transcriptomics analysis revealing flower trichome development during flower development in two Lonicera japonica Thunb. cultivars using RNA-seq
Cited by: 7
Author(s): Jianjun Li, Chenglin Ye, Cuifang Chang
Software Mentions: 1
Published: over 4 years ago

10.1186/s12864-020-07190-w

Transcriptome analysis of genes and pathways associated with metabolism in Scylla paramamosain under different light intensities during indoor overwintering
Cited by: 11
Author(s): Na Li, Junming Zhou, Huan Wang, Ce Shi, Lei Liu
Software Mentions: 1
Published: about 4 years ago

10.1016/j.jinf.2019.08.003

Metagenomic next-generation sequencing aids the diagnosis of viral infections in febrile returning travellers
Cited by: 43
Author(s): H. Kim Jerome, Callum Taylor, Vattipally B Sreenu, Tetyana Klymenko, Ana da Silva Filipe, Celia Jackson, Chris Davis, Shirin Ashraf, Eleri Wilson-Davies, Natasha Jesudason, Karen Devine, Lisbeth Harder, Celia Aitken, Rory Gunson, Emma C. Thomson
Software Mentions: 1
Published: about 5 years ago

10.3389/fpls.2021.704985

Root Endophytes and Ginkgo biloba Are Likely to Share and Compensate Secondary Metabolic Processes, and Potentially Exchange Genetic Information by LTR-RTs
Cited by: 9
Author(s): Kai Zou, Xueduan Liu, Qi Hu, Du Zhang, Shaodong Fu, Shuangfei Zhang, Haonan Huang, Fangmeng Lei, Guoqing Zhang, Bo Miao, Delong Meng, Luhua Jiang, Hongwei Liu, Huaqun Yin, Yili Liang
Software Mentions: 1
Published: over 3 years ago

10.3389/fpls.2019.01297

Comparative Genomic and Transcriptomic Analysis Suggests the Evolutionary Dynamic of GH3 Genes in Gramineae Crops
Cited by: 14
Author(s): Weilong Kong, Yue Zhang, Xiaoxiao Deng, Shuangmiao Li, Chenhao Zhang, Yangsheng Li
Software Mentions: 1
Published: about 5 years ago

10.3390/genes12010098

Metagenome Analysis of a Hydrocarbon-Degrading Bacterial Consortium Reveals the Specific Roles of BTEX Biodegraders
Cited by: 18
Author(s): Michael O. Eze
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12864-020-07266-7

Transcriptional response of Asarum heterotropoides Fr. Schmidt var. mandshuricum (Maxim.) Kitag. leaves grown under full and partial daylight conditions
Cited by: 1
Author(s): Zhiqing Wang, Ma Haiqin, Min Zhang, Ziqing Wang, Yongchao Tian, Wei Li, Ying‐Ping Wang
Software Mentions: 1
Published: almost 4 years ago

10.1093/gbe/evaa060

Inferring Tunicate Relationships and the Evolution of the Tunicate Hox Cluster with the Genome of Corella inflata
Cited by: 10
Author(s): Melissa B. DeBiasse, William Colgan, Lincoln Harris, B. Davidson, Joseph F. Ryan
Software Mentions: 1
Published: almost 5 years ago

10.1038/srep42348

Rare-earth free self-luminescent Ca2KZn2(VO4)3 phosphors for intense white light-emitting diodes
Cited by: 65
Author(s): L. Krishna Bharat, Soo-Kun Jeon, Kurugundla Gopi Krishna, Yun Suk Huh
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12864-020-6480-9

Insights into high-pressure acclimation: comparative transcriptome analysis of sea cucumber Apostichopus japonicus at different hydrostatic pressure exposures
Cited by: 4
Author(s): Linying Liang, Jiawei Chen, Yanan Li, Haibin Zhang
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-67921-7

Isolation, identification, and whole genome sequence analysis of the alginate-degrading bacterium Cobetia sp. cqz5-12
Cited by: 4
Author(s): Wenwen Cheng, Xuanyu Yan, Jiali Xiao, Yunyun Chen, Ming‐Hui Chen, Jiaqi Jin, Yu Bai, Qi Wang, Zhiyong Liao, Qiongzhen Chen
Software Mentions: 1
Published: over 4 years ago

Projects: pypi: diamond

Papers Mentioning diamond 68