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An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Papers: 10.1371/journal.pone.0169662

https://doi.org/10.1371/journal.pone.0169662

Comparing and Evaluating Metagenome Assembly Tools from a Microbiologist’s Perspective - Not Only Size Matters!

Cited by: 171
Author(s): John Vollmers, Sandra Wiegand, Anne‐Kristin Kaster
Published: over 8 years ago

Software Mentions 11

bioconductor: DECIPHER
Tools for curating, analyzing, and manipulating biological sequences
Papers that mentioned: 415
Very Likely Science (98)
bioconductor: muscle
Multiple Sequence Alignment with MUSCLE
Papers that mentioned: 166
Very Likely Science (100)
cran: ART
Aligned Rank Transform for Nonparametric Factorial Analysis
Papers that mentioned: 580
Very Likely Science (85)
cran: fasta
Fast Adaptive Shrinkage/Thresholding Algorithm
Papers that mentioned: 848
Very Likely Science (60)
pypi: Assembly
Assembly is a pythonic object-oriented, mid stack, batteries included framework built on Flask, that adds structure to your Flask application, and group your routes by class.Assembly allows developers to build web applications in much the same way they would build any other object-oriented Python program.Assembly Makes Flask Great Again!
Papers that mentioned: 147
Very Likely Science (65)
pypi: diamond
Smart data producer for graphite graphing package
Papers that mentioned: 68
Very Likely Science (100)
pypi: fasta
The fasta python package enables you to deal with biological sequence files easily.
Papers that mentioned: 848
Very Likely Science (80)
pypi: fq2fa
Convert fastq to fasta sequences
Papers that mentioned: 5
Very Likely Science (65)
pypi: khmer
khmer k-mer counting library
Papers that mentioned: 110
Very Likely Science (80)
pypi: muscle
Strength Training Program Generator
Papers that mentioned: 166
Very Likely Science (90)
pypi: stdin
stdin.size(), stdin.read() functions
Papers that mentioned: 4
Very Likely Science (65)