Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1099/mgen.0.000499

https://doi.org/10.1099/mgen.0.000499

Cited by: 32
Author(s): Gal Horesh, Grace A. Blackwell, Gerry Tonkin‐Hill, Jukka Corander, Eva Heinz, Nicholas R. Thomson
Published: over 3 years ago

Software Mentions 12

bioconductor: ggtree
an R package for visualization of tree and annotation data
Papers that mentioned: 474
cran: dbscan
Density-Based Spatial Clustering of Applications with Noise (DBSCAN) and Related Algorithms
Papers that mentioned: 49
cran: fasta
Fast Adaptive Shrinkage/Thresholding Algorithm
Papers that mentioned: 848
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
pypi: ariba
ARIBA: Antibiotic Resistance Identification By Assembly
Papers that mentioned: 15
pypi: bigsi
BItsliced Genomic Signature Index - Efficient indexing and search in very large collections of WGS data
Papers that mentioned: 1
pypi: dbscan
Theoretically efficient and practical parallel DBSCAN
Papers that mentioned: 49
pypi: diamond
Smart data producer for graphite graphing package
Papers that mentioned: 68
pypi: fasta
The fasta python package enables you to deal with biological sequence files easily.
Papers that mentioned: 848
pypi: mccortex
.
Papers that mentioned: 1
pypi: poppunk
PopPUNK (POPulation Partitioning Using Nucleotide Kmers)
Papers that mentioned: 1
pypi: velvet
Beautiful signal processing and communications algorithms in Python
Papers that mentioned: 156