Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: dbscan
https://packages.ecosyste.ms/registries/pypi.org/packages/dbscan
Theoretically efficient and practical parallel DBSCAN
8 versions
Latest release: almost 2 years ago
3,048 downloads last month
Papers Mentioning dbscan 49
10.7717/peerj.5794
beadplexr: reproducible and automated analysis of multiplex bead assaysCited by: 4
Author(s): Ulrik Stervbo, Timm H. Westhoff, Nina Babel
Software Mentions: 20
Published: about 6 years ago
10.3390/s19204551
Assessing Older Adults’ Daily Mobility: A Comparison of GPS-Derived and Self-Reported Mobility IndicatorsCited by: 24
Author(s): Michelle Pasquale Fillekes, Eun Kyeong Kim, Rieke Trumpf, Wiebren Zijlstra, Eleftheria Giannouli, Robert Weibel
Software Mentions: 19
Published: about 5 years ago
10.3390/ijms21228837
Machine Learning Identifies Robust Matrisome Markers and Regulatory Mechanisms in CancerCited by: 6
Author(s): Anni Kääriäinen, Vilma Pesola, Annalena Dittmann, Juho A. J. Kontio, Jarkko Koivunen, Taina Pihlajaniemi, Valerio Izzi
Software Mentions: 18
Published: about 4 years ago
10.1093/bioinformatics/bty947
SkeletalVis: an exploration and meta-analysis data portal of cross-species skeletal transcriptomics dataCited by: 19
Author(s): Jamie Soul, Timothy E. Hardingham, Raymond P. Boot-Handford, Jean-Marc Schwartz
Software Mentions: 18
Published: almost 6 years ago
10.1186/s12942-019-0181-0
Towards a comprehensive set of GPS-based indicators reflecting the multidimensional nature of daily mobility for applications in health and aging researchCited by: 47
Author(s): Michelle Pasquale Fillekes, Eleftheria Giannouli, Eun Kyeong Kim, Wiebren Zijlstra, Robert Weibel
Software Mentions: 18
Published: over 5 years ago
10.15252/msb.20188636
Unsupervised identification of disease states from high‐dimensional physiological and histopathological profilesCited by: 11
Author(s): Kenichi Shimada, Timothy J. Mitchison
Software Mentions: 17
Published: almost 6 years ago
10.1038/s42003-019-0554-8
Single-cell landscape in mammary epithelium reveals bipotent-like cells associated with breast cancer risk and outcomeCited by: 37
Author(s): Weiyan Chen, Samuel Morabito, Kai Kessenbrock, Tariq Enver, Kerstin B. Meyer, Andrew E. Teschendorff
Software Mentions: 14
Published: over 5 years ago
10.1099/mgen.0.000499
A comprehensive and high-quality collection of Escherichia coli genomes and their genesCited by: 32
Author(s): Gal Horesh, Grace A. Blackwell, Gerry Tonkin‐Hill, Jukka Corander, Eva Heinz, Nicholas R. Thomson
Software Mentions: 12
Published: almost 4 years ago
10.1038/s41598-021-94656-w
A global assessment of surveillance methods for dominant malaria vectorsCited by: 4
Author(s): Bram van de Straat, Tanya L. Russell, Kyran M. Staunton, Marianne Sinka, Thomas R. Burkot
Software Mentions: 11
Published: over 3 years ago
10.1186/s13059-021-02484-y
Revisiting genetic artifacts on DNA methylation microarrays exposes novel biological implicationsCited by: 5
Author(s): Benjamin Planterose Jiménez, Manfred Kayser, Athina Vidaki
Software Mentions: 10
Published: about 3 years ago
10.1038/s42003-021-02009-0
Pests, diseases, and aridity have shaped the genome of Corymbia citriodoraCited by: 15
Author(s): Adam Healey, Mervyn Shepherd, Graham J. King, Jakob B. Butler, Jules S. Freeman, David J Lee, Brad M. Potts, Orzenil B. Silva‐Junior, Abdul Baten, Jerry Jenkins, Shengqiang Shu, John T. Lovell, Avinash Sreedasyam, Jane Grimwood, Agnelo Furtado, Dário Grattapaglia, Kerrie Barry, Hope Hundley, Blake A. Simmons, Jeremy Schmutz, René E. Vaillancourt, Robert J. Henry
Software Mentions: 10
Published: over 3 years ago
10.26508/lsa.202000794
Requirement of DNMT1 to orchestrate epigenomic reprogramming for NPM-ALK–driven lymphomagenesisCited by: 5
Author(s): Elisa Redl, Raheleh Sheibani-Tezerji, Crhistian de Jesus Cardona, Patricia Hamminger, Gerald Timelthaler, Melanie R. Hassler, Maša Zrimšek, Sabine Lagger, Thomas Dillinger, Lorena Hofbauer, Kristina Draganić, Andreas Tiefenbacher, Michael Kothmayer, C. Dietz, Bernard Ramsahoye, Lukas Kenner, Christoph Bock, Christian Seiser, Wilfried Ellmeier, Gabriele Schweikert, Gerda Egger
Software Mentions: 9
Published: almost 4 years ago
10.1038/s41598-018-35306-6
Individual variability in diving, movement and activity patterns of adult bearded seals in Svalbard, NorwayCited by: 21
Author(s): Charmain D. Hamilton, Kit M. Kovacs, Christian Lydersen
Software Mentions: 9
Published: about 6 years ago
10.3389/fgene.2019.00853
SeqDeχ: A Sequence Deconvolution Tool for Genome Separation of Endosymbionts From Mixed Sequencing SamplesCited by: 0
Author(s): Alice Chiodi, Francesco Comandatore, Davide Sassera, Giulio Petroni, Claudio Bandi, Matteo Brilli
Software Mentions: 8
Published: about 5 years ago
10.1016/j.compbiomed.2021.104556
NFnetFu: A novel workflow for microbiome data fusionCited by: 3
Author(s): Vartika Bisht, Animesh Acharjee, Georgios V. Gkoutos
Software Mentions: 8
Published: over 3 years ago
10.1038/s41598-021-84759-9
Swine growth promotion with antibiotics or alternatives can increase antibiotic resistance gene mobility potentialCited by: 28
Author(s): Johanna Muurinen, Jacob A Richert, Carmen L. Wickware, B. T. Richert, Timothy A. Johnson
Software Mentions: 7
Published: over 3 years ago
10.1371/journal.pone.0244637
metaVaR: Introducing metavariant species models for reference-free metagenomic-based population genomicsCited by: 5
Author(s): Romuald Laso-Jadart, Christophe Ambroise, Pierre Peterlongo, Mohammed‐Amin Madoui
Software Mentions: 7
Published: almost 4 years ago
10.1371/journal.pone.0246529
Unsupervised learning of Swiss population spatial distributionCited by: 0
Author(s): Mikhaïl Kanevski
Software Mentions: 7
Published: almost 4 years ago
10.1007/s10549-019-05135-w
A high-risk luminal A dominant breast cancer subtype with increased mobilityCited by: 21
Author(s): Liping Guo, Guoji Chen, Wen Zhang, Lülin Zhou, Ting Xiao, Di Xia, Yipeng Wang, Feng Li, Kaitai Zhang
Software Mentions: 7
Published: almost 6 years ago
10.1007/s00401-019-02020-0
Second-generation molecular subgrouping of medulloblastoma: an international meta-analysis of Group 3 and Group 4 subtypesCited by: 161
Author(s): Tanvi Sharma, Ed C. Schwalbe, Daniel Williamson, Martin Sill, Volker Hovestadt, Martin Mynarek, Stefan Rutkowski, Giles Robinson, Amar Gajjar, Florence M.G. Cavalli, Vijay Ramaswamy, Michael D. Taylor, Janet C. Lindsey, Rebecca Hill, Natalie Jäger, Andrey Korshunov, Debbie Hicks, Simon Bailey, Marcel Kool, Lukas Chávez, Paul A. Northcott, Stefan M. Pfister, Steven C. Clifford
Software Mentions: 6
Published: over 5 years ago
10.1186/s13100-019-0156-5
Subtype classification and functional annotation of L1Md retrotransposon promotersCited by: 15
Author(s): Meng Zhou, Andrew D. Smith
Software Mentions: 6
Published: over 5 years ago
10.1371/journal.pone.0210236
Clustering algorithms: A comparative approachCited by: 275
Author(s): Mayra Z. Rodriguez, César H. Comin, Dalcimar Casanova, Odemir Martinez Bruno, Diego R. Amancio, Luciano da Fontoura Costa, Francisco A. Rodrigues
Software Mentions: 6
Published: almost 6 years ago
10.5811/westjem.2018.4.37054
Geospatial Clustering of Opioid-Related Emergency Medical Services Runs for Public Deployment of NaloxoneCited by: 19
Author(s): Daniel A. Dworkis, Scott G. Weiner, Vincent T Liao, Danielle Rabickow, Scott A Goldberg
Software Mentions: 5
Published: over 6 years ago
10.1038/s41598-021-97227-1
Detecting anchored fish aggregating devices (AFADs) and estimating use patterns from vessel tracking data in small-scale fisheriesCited by: 6
Author(s): Ahmad Catur Widyatmoko, Britta Denise Hardesty, Chris Wilcox
Software Mentions: 5
Published: about 3 years ago
10.3389/fimmu.2021.637832
Dynamic Intracellular Metabolic Cell Signaling Profiles During Ag-Dependent B-Cell DifferentiationCited by: 3
Author(s): Paula Díez, Martín Pérez‐Andrés, Martin Bøgsted, Mikel Azkargorta, Rodrigo García-Valiente, Rosa Ma Dégano, E Blanco, Sheila Mateos-Gomez, Paloma Bárcena, Santiago Cruz, Rafael Góngora, Félix Elortza, Alicia Landeira-Viñuela, Pablo Juanes-Velasco, Víctor Segura, Raúl Manzano-Román, Júlia Almeida, Karen Dybkær, Alberto Órfão, Manuel Fuentes
Software Mentions: 5
Published: over 3 years ago
10.3389/fmicb.2018.01138
Physicochemical Drivers of Microbial Community Structure in Sediments of Lake Hazen, Nunavut, CanadaCited by: 43
Author(s): Matti O. Ruuskanen, Kyra A. St. Pierre, Vincent L. St. Louis, Stéphane Aris‐Brosou, Alexandre J. Poulain
Software Mentions: 5
Published: over 6 years ago
10.1021/acs.jcim.0c01179
Conduction and Gating Properties of the TRAAK Channel from Molecular Dynamics Simulations with Different Force FieldsCited by: 13
Author(s): Riccardo Ocello, Simone Furini, Francesca Lugli, Maurizio Recanatini, Carmen Domene, Matteo Masetti
Software Mentions: 5
Published: almost 4 years ago
10.1038/s41598-020-65119-5
Multi-omic signatures identify pan-cancer classes of tumors beyond tissue of originCited by: 17
Author(s): Agustín González-Reymúndez, Ana I. Vázquez
Software Mentions: 5
Published: over 4 years ago
10.7717/peerj-cs.321
Big data clustering techniques based on Spark: a literature reviewCited by: 14
Author(s): Mozamel M. Saeed, Zaher Al Aghbari, Mohammed Alsharidah
Software Mentions: 4
Published: almost 4 years ago
10.1186/s12263-018-0594-6
Studying microbial functionality within the gut ecosystem by systems biologyCited by: 30
Author(s): Bastian Hornung, Vítor A. P. Martins dos Santos, Hauke Smidt, Peter J. Schaap
Software Mentions: 4
Published: over 6 years ago
10.7717/peerj.8767
Application of artificially intelligent systems for the identification of discrete fossiliferous levelsCited by: 9
Author(s): David Manuel Martín-Perea, Lloyd A. Courtenay, M. Soledad Domingo, Jorge Morales
Software Mentions: 4
Published: over 4 years ago
10.3389/fmicb.2018.02581
Structural and Functional Characterization of PA14/Flo5-Like Adhesins From Komagataella pastorisCited by: 6
Author(s): Michael D. Kock, Stefan Brückner, Nina Wozniak, M. Maestre-Reyna, M. Veelders, Julia Schlereth, Hans‐Ulrich Mösch, Lars‐Oliver Essen
Software Mentions: 4
Published: about 6 years ago
10.1038/s42003-021-02499-y
Modeling the effects of EMT-immune dynamics on carcinoma disease progressionCited by: 2
Author(s): Daniel Bergman, Matthew Karikomi, Min Yu, Qing Nie, Adam L. MacLean
Software Mentions: 4
Published: over 3 years ago
10.15252/msb.20177573
Genomewide phenotypic analysis of growth, cell morphogenesis, and cell cycle events in <i>Escherichia coli</i>Cited by: 61
Author(s): Manuel Campos, Sander K. Govers, Irnov Irnov, Genevieve S Dobihal, François Cornet, Christine Jacobs‐Wagner
Software Mentions: 4
Published: over 6 years ago
10.1038/s41598-021-87061-w
Vitamin D and lumisterol derivatives can act on liver X receptors (LXRs)Cited by: 47
Author(s): Andrzej Słomiński, Tae Kang Kim, Shariq Qayyum, Yuwei Song, Zorica Janjetovic, Allen S.W. Oak, Radomir M. Slominski, Chander Raman, Joanna Stefan, Carlos A. Mier‐Aguilar, Venkatram R. Atigadda, David K. Crossman, Andriy G. Golub, Yaroslav V. Bilokin, Edith K.Y. Tang, Jake Y. Chen, Robert C. Tuckey, Anton M. Jetten
Software Mentions: 4
Published: over 3 years ago
10.3390/s150818613
Scalable and Cost-Effective Assignment of Mobile Crowdsensing Tasks Based on Profiling Trends and Prediction: The ParticipAct Living Lab ExperienceCited by: 28
Author(s): Paolo Bellavista, Antonio Corradi, Luca Foschini, Raffaele Ianniello
Software Mentions: 4
Published: over 9 years ago
10.3389/fnins.2021.667373
A High Accuracy Electrographic Seizure Classifier Trained Using Semi-Supervised Labeling Applied to a Large Spectrogram DatasetCited by: 5
Author(s): Wade Barry, Sharanya Arcot Desai, Thomas K. Tcheng, Martha J. Morrell
Software Mentions: 4
Published: over 3 years ago
10.1186/s12884-021-03807-4
Comparison of first trimester dating methods for gestational age estimation and their implication on preterm birth classification in a North Indian cohortCited by: 4
Author(s): Ramya Vijayram, Nikhita Damaraju, Ashley Xavier, Bapu Koundinya Desiraju, Ramachandran Thiruvengadam, Sumit Misra, Shilpa Chopra, Ashok Khurana, Nitya Wadhwa, Raghunathan Rengaswamy, Himanshu Sinha, Shinjini Bhatnagar
Software Mentions: 4
Published: over 3 years ago
10.1371/journal.pone.0093344
Mapping Topographic Structure in White Matter Pathways with Level Set TreesCited by: 5
Author(s): Brian P. Kent, Alessandro Rinaldo, Fang‐Cheng Yeh, Timothy Verstynen
Software Mentions: 3
Published: over 10 years ago
10.1371/journal.pone.0240356
Perceptual holistic color combination analysis of Papilionidae butterflies as aesthetic objectsCited by: 1
Author(s): Erina Kakehashi, Keiichi Muramatsu, Hiroki Hibino
Software Mentions: 3
Published: about 4 years ago
10.1371/journal.pone.0238143
Estimation of the shared mobility demand based on the daily regularity of the urban mobility and the similarity of individual tripsCited by: 7
Author(s): Cyril Veve, Nicolas Chiabaut
Software Mentions: 3
Published: about 4 years ago
10.1371/journal.pone.0230458
Cultivar-specific nutritional status of potato (Solanum tuberosum L.) cropsCited by: 12
Author(s): Zonlehoua Coulibali, Athyna N. Cambouris, Léon‐Étienne Parent
Software Mentions: 3
Published: over 4 years ago
10.3389/fneur.2019.01252
Neurodegenerative Disease–Associated Variants in TREM2 Destabilize the Apical Ligand-Binding Region of the Immunoglobulin DomainCited by: 19
Author(s): Hunter B. Dean, Erik D. Roberson, Yuhua Song
Software Mentions: 3
Published: almost 5 years ago
10.3390/molecules25051119
Identification and Characterization of Cannabimovone, a Cannabinoid from Cannabis sativa, as a Novel PPARγ Agonist via a Combined Computational and Functional StudyCited by: 19
Author(s): Fabio Arturo Iannotti, Fabrizia De Maio, Elisabetta Panza, Giovanni Appendino, Orazio Taglialatela‐Scafati, Luciano De Petrocellis, Pietro Amodeo, Rosa Vitale
Software Mentions: 2
Published: over 4 years ago
10.1371/journal.pone.0248840
Main control factors affecting mechanical oil recovery efficiency in complex blocks identified using the improved k-means algorithmCited by: 2
Author(s): Qiuyu Lu, Suling Wang, Minghu Jiang, Yanchun Li, Kun Dong
Software Mentions: 2
Published: over 3 years ago
10.1186/s12859-017-1967-3
CoMet: a workflow using contig coverage and composition for binning a metagenomic sample with high precisionCited by: 15
Author(s): Damayanthi Herath, Sen‐Lin Tang, Kshitij Tandon, David C. Ackland, Saman K. Halgamuge
Software Mentions: 2
Published: almost 7 years ago
10.1007/s00401-019-02023-x
Depopulation of dense α-synuclein aggregates is associated with rescue of dopamine neuron dysfunction and death in a new Parkinson’s disease modelCited by: 73
Author(s): Michal̵ Węgrzynowicz, Dana Bar-On, Laura Calò, Oleg Anichtchik, Mariangela Iovino, Jing Xia, Sergey Ryazanov, Andrei Leonov, Armin Giese, Jeffrey W. Dalley, Christian Griesinger, Uri Ashery, Maria Grazia Spillantini
Software Mentions: 2
Published: over 5 years ago
10.1523/ENEURO.0494-20.2021
Large-Scale and Multiscale Networks in the Rodent Brain during Novelty ExplorationCited by: 3
Author(s): Michael X Cohen, Bernhard Englitz, Arthur S. C. França
Software Mentions: 2
Published: over 3 years ago