Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Papers: 10.1093/bioinformatics/bty947
https://doi.org/10.1093/bioinformatics/bty947
Cited by: 19
Author(s): Jamie Soul, Timothy E. Hardingham, Raymond P. Boot-Handford, Jean-Marc Schwartz
Published: over 5 years ago
Software Mentions 18
bioconductor: ArrayExpress
Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSetPapers that mentioned: 1,962
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distributionPapers that mentioned: 9,583
bioconductor: ExpressionAtlas
Download datasets from EMBL-EBI Expression AtlasPapers that mentioned: 7
bioconductor: genefilter
genefilter: methods for filtering genes from high-throughput experimentsPapers that mentioned: 142
bioconductor: goseq
Gene Ontology analyser for RNA-seq and other length biased dataPapers that mentioned: 132
bioconductor: RankProd
Rank Product method for identifying differentially expressed genes with application in meta-analysisPapers that mentioned: 213
bioconductor: RcisTarget
RcisTarget Identify transcription factor binding motifs enriched on a list of genes or genomic regionsPapers that mentioned: 55
bioconductor: RGalaxy
Papers that mentioned: 1cran: dbscan
Density-Based Spatial Clustering of Applications with Noise (DBSCAN) and Related AlgorithmsPapers that mentioned: 49
cran: GeoDE
A geometrical Approach to Differential expression and gene-set enrichmentPapers that mentioned: 1
cran: Rtsne
T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut ImplementationPapers that mentioned: 255
pypi: plotly
An open-source, interactive data visualization library for PythonPapers that mentioned: 163