cran: dbscan | Projects | Ecosyste.ms: Papers

10.7717/peerj.5794

beadplexr: reproducible and automated analysis of multiplex bead assays
Cited by: 4
Author(s): Ulrik Stervbo, Timm H. Westhoff, Nina Babel
Software Mentions: 20
Published: almost 6 years ago

Assessing Older Adults’ Daily Mobility: A Comparison of GPS-Derived and Self-Reported Mobility Indicators
Cited by: 24
Author(s): Michelle Pasquale Fillekes, Eun Kyeong Kim, Rieke Trumpf, Wiebren Zijlstra, Eleftheria Giannouli, Robert Weibel
Software Mentions: 19
Published: about 5 years ago

10.3390/ijms21228837

Machine Learning Identifies Robust Matrisome Markers and Regulatory Mechanisms in Cancer
Cited by: 6
Author(s): Anni Kääriäinen, Vilma Pesola, Annalena Dittmann, Juho A. J. Kontio, Jarkko Koivunen, Taina Pihlajaniemi, Valerio Izzi
Software Mentions: 18
Published: almost 4 years ago

10.1093/bioinformatics/bty947

SkeletalVis: an exploration and meta-analysis data portal of cross-species skeletal transcriptomics data
Cited by: 19
Author(s): Jamie Soul, Timothy E. Hardingham, Raymond P. Boot-Handford, Jean-Marc Schwartz
Software Mentions: 18
Published: almost 6 years ago

10.1186/s12942-019-0181-0

Towards a comprehensive set of GPS-based indicators reflecting the multidimensional nature of daily mobility for applications in health and aging research
Cited by: 47
Author(s): Michelle Pasquale Fillekes, Eleftheria Giannouli, Eun Kyeong Kim, Wiebren Zijlstra, Robert Weibel
Software Mentions: 18
Published: over 5 years ago

10.15252/msb.20188636

Unsupervised identification of disease states from high‐dimensional physiological and histopathological profiles
Cited by: 11
Author(s): Kenichi Shimada, Timothy J. Mitchison
Software Mentions: 17
Published: almost 6 years ago

10.1038/s42003-019-0554-8

Single-cell landscape in mammary epithelium reveals bipotent-like cells associated with breast cancer risk and outcome
Cited by: 37
Author(s): Weiyan Chen, Samuel Morabito, Kai Kessenbrock, Tariq Enver, Kerstin B. Meyer, Andrew E. Teschendorff
Software Mentions: 14
Published: about 5 years ago

10.1099/mgen.0.000499

A comprehensive and high-quality collection of Escherichia coli genomes and their genes
Cited by: 32
Author(s): Gal Horesh, Grace A. Blackwell, Gerry Tonkin‐Hill, Jukka Corander, Eva Heinz, Nicholas R. Thomson
Software Mentions: 12
Published: almost 4 years ago

10.1038/s41598-021-94656-w

A global assessment of surveillance methods for dominant malaria vectors
Cited by: 4
Author(s): Bram van de Straat, Tanya L. Russell, Kyran M. Staunton, Marianne Sinka, Thomas R. Burkot
Software Mentions: 11
Published: over 3 years ago

10.1186/s13059-021-02484-y

Revisiting genetic artifacts on DNA methylation microarrays exposes novel biological implications
Cited by: 5
Author(s): Benjamin Planterose Jiménez, Manfred Kayser, Athina Vidaki
Software Mentions: 10
Published: about 3 years ago

10.1038/s42003-021-02009-0

Pests, diseases, and aridity have shaped the genome of Corymbia citriodora
Cited by: 15
Author(s): Adam Healey, Mervyn Shepherd, Graham J. King, Jakob B. Butler, Jules S. Freeman, David J Lee, Brad M. Potts, Orzenil B. Silva‐Junior, Abdul Baten, Jerry Jenkins, Shengqiang Shu, John T. Lovell, Avinash Sreedasyam, Jane Grimwood, Agnelo Furtado, Dário Grattapaglia, Kerrie Barry, Hope Hundley, Blake A. Simmons, Jeremy Schmutz, René E. Vaillancourt, Robert J. Henry
Software Mentions: 10
Published: over 3 years ago

10.26508/lsa.202000794

Requirement of DNMT1 to orchestrate epigenomic reprogramming for NPM-ALK–driven lymphomagenesis
Cited by: 5
Author(s): Elisa Redl, Raheleh Sheibani-Tezerji, Crhistian de Jesus Cardona, Patricia Hamminger, Gerald Timelthaler, Melanie R. Hassler, Maša Zrimšek, Sabine Lagger, Thomas Dillinger, Lorena Hofbauer, Kristina Draganić, Andreas Tiefenbacher, Michael Kothmayer, C. Dietz, Bernard Ramsahoye, Lukas Kenner, Christoph Bock, Christian Seiser, Wilfried Ellmeier, Gabriele Schweikert, Gerda Egger
Software Mentions: 9
Published: almost 4 years ago

10.1038/s41598-018-35306-6

Individual variability in diving, movement and activity patterns of adult bearded seals in Svalbard, Norway
Cited by: 21
Author(s): Charmain D. Hamilton, Kit M. Kovacs, Christian Lydersen
Software Mentions: 9
Published: almost 6 years ago

10.3389/fgene.2019.00853

SeqDeχ: A Sequence Deconvolution Tool for Genome Separation of Endosymbionts From Mixed Sequencing Samples
Cited by: 0
Author(s): Alice Chiodi, Francesco Comandatore, Davide Sassera, Giulio Petroni, Claudio Bandi, Matteo Brilli
Software Mentions: 8
Published: about 5 years ago

10.1016/j.compbiomed.2021.104556

NFnetFu: A novel workflow for microbiome data fusion
Cited by: 3
Author(s): Vartika Bisht, Animesh Acharjee, Georgios V. Gkoutos
Software Mentions: 8
Published: over 3 years ago

10.1038/s41598-021-84759-9

Swine growth promotion with antibiotics or alternatives can increase antibiotic resistance gene mobility potential
Cited by: 28
Author(s): Johanna Muurinen, Jacob A Richert, Carmen L. Wickware, B. T. Richert, Timothy A. Johnson
Software Mentions: 7
Published: over 3 years ago

10.1371/journal.pone.0244637

metaVaR: Introducing metavariant species models for reference-free metagenomic-based population genomics
Cited by: 5
Author(s): Romuald Laso-Jadart, Christophe Ambroise, Pierre Peterlongo, Mohammed‐Amin Madoui
Software Mentions: 7
Published: almost 4 years ago

10.1371/journal.pone.0246529

Unsupervised learning of Swiss population spatial distribution
Cited by: 0
Author(s): Mikhaïl Kanevski
Software Mentions: 7
Published: over 3 years ago

10.1007/s10549-019-05135-w

A high-risk luminal A dominant breast cancer subtype with increased mobility
Cited by: 21
Author(s): Liping Guo, Guoji Chen, Wen Zhang, Lülin Zhou, Ting Xiao, Di Xia, Yipeng Wang, Feng Li, Kaitai Zhang
Software Mentions: 7
Published: over 5 years ago

10.1007/s00401-019-02020-0

Second-generation molecular subgrouping of medulloblastoma: an international meta-analysis of Group 3 and Group 4 subtypes
Cited by: 161
Author(s): Tanvi Sharma, Ed C. Schwalbe, Daniel Williamson, Martin Sill, Volker Hovestadt, Martin Mynarek, Stefan Rutkowski, Giles Robinson, Amar Gajjar, Florence M.G. Cavalli, Vijay Ramaswamy, Michael D. Taylor, Janet C. Lindsey, Rebecca Hill, Natalie Jäger, Andrey Korshunov, Debbie Hicks, Simon Bailey, Marcel Kool, Lukas Chávez, Paul A. Northcott, Stefan M. Pfister, Steven C. Clifford
Software Mentions: 6
Published: over 5 years ago

10.1186/s13100-019-0156-5

Subtype classification and functional annotation of L1Md retrotransposon promoters
Cited by: 15
Author(s): Meng Zhou, Andrew D. Smith
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0210236

Clustering algorithms: A comparative approach
Cited by: 275
Author(s): Mayra Z. Rodriguez, César H. Comin, Dalcimar Casanova, Odemir Martinez Bruno, Diego R. Amancio, Luciano da Fontoura Costa, Francisco A. Rodrigues
Software Mentions: 6
Published: almost 6 years ago

10.5811/westjem.2018.4.37054

Geospatial Clustering of Opioid-Related Emergency Medical Services Runs for Public Deployment of Naloxone
Cited by: 19
Author(s): Daniel A. Dworkis, Scott G. Weiner, Vincent T Liao, Danielle Rabickow, Scott A Goldberg
Software Mentions: 5
Published: over 6 years ago

10.1038/s41598-021-97227-1

Detecting anchored fish aggregating devices (AFADs) and estimating use patterns from vessel tracking data in small-scale fisheries
Cited by: 6
Author(s): Ahmad Catur Widyatmoko, Britta Denise Hardesty, Chris Wilcox
Software Mentions: 5
Published: about 3 years ago

10.3389/fimmu.2021.637832

Dynamic Intracellular Metabolic Cell Signaling Profiles During Ag-Dependent B-Cell Differentiation
Cited by: 3
Author(s): Paula Díez, Martín Pérez‐Andrés, Martin Bøgsted, Mikel Azkargorta, Rodrigo García-Valiente, Rosa Ma Dégano, E Blanco, Sheila Mateos-Gomez, Paloma Bárcena, Santiago Cruz, Rafael Góngora, Félix Elortza, Alicia Landeira-Viñuela, Pablo Juanes-Velasco, Víctor Segura, Raúl Manzano-Román, Júlia Almeida, Karen Dybkær, Alberto Órfão, Manuel Fuentes
Software Mentions: 5
Published: over 3 years ago

10.3389/fmicb.2018.01138

Physicochemical Drivers of Microbial Community Structure in Sediments of Lake Hazen, Nunavut, Canada
Cited by: 43
Author(s): Matti O. Ruuskanen, Kyra A. St. Pierre, Vincent L. St. Louis, Stéphane Aris‐Brosou, Alexandre J. Poulain
Software Mentions: 5
Published: over 6 years ago

10.1021/acs.jcim.0c01179

Conduction and Gating Properties of the TRAAK Channel from Molecular Dynamics Simulations with Different Force Fields
Cited by: 13
Author(s): Riccardo Ocello, Simone Furini, Francesca Lugli, Maurizio Recanatini, Carmen Domene, Matteo Masetti
Software Mentions: 5
Published: almost 4 years ago

10.1038/s41598-020-65119-5

Multi-omic signatures identify pan-cancer classes of tumors beyond tissue of origin
Cited by: 17
Author(s): Agustín González-Reymúndez, Ana I. Vázquez
Software Mentions: 5
Published: over 4 years ago

10.7717/peerj-cs.321

Big data clustering techniques based on Spark: a literature review
Cited by: 14
Author(s): Mozamel M. Saeed, Zaher Al Aghbari, Mohammed Alsharidah
Software Mentions: 4
Published: almost 4 years ago

10.1186/s12263-018-0594-6

Studying microbial functionality within the gut ecosystem by systems biology
Cited by: 30
Author(s): Bastian Hornung, Vítor A. P. Martins dos Santos, Hauke Smidt, Peter J. Schaap
Software Mentions: 4
Published: over 6 years ago

10.7717/peerj.8767

Application of artificially intelligent systems for the identification of discrete fossiliferous levels
Cited by: 9
Author(s): David Manuel Martín-Perea, Lloyd A. Courtenay, M. Soledad Domingo, Jorge Morales
Software Mentions: 4
Published: over 4 years ago

10.3389/fmicb.2018.02581

Structural and Functional Characterization of PA14/Flo5-Like Adhesins From Komagataella pastoris
Cited by: 6
Author(s): Michael D. Kock, Stefan Brückner, Nina Wozniak, M. Maestre-Reyna, M. Veelders, Julia Schlereth, Hans‐Ulrich Mösch, Lars‐Oliver Essen
Software Mentions: 4
Published: about 6 years ago

10.1038/s42003-021-02499-y

Modeling the effects of EMT-immune dynamics on carcinoma disease progression
Cited by: 2
Author(s): Daniel Bergman, Matthew Karikomi, Min Yu, Qing Nie, Adam L. MacLean
Software Mentions: 4
Published: about 3 years ago

10.15252/msb.20177573

Genomewide phenotypic analysis of growth, cell morphogenesis, and cell cycle events in <i>Escherichia coli</i>
Cited by: 61
Author(s): Manuel Campos, Sander K. Govers, Irnov Irnov, Genevieve S Dobihal, François Cornet, Christine Jacobs‐Wagner
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-021-87061-w

Vitamin D and lumisterol derivatives can act on liver X receptors (LXRs)
Cited by: 47
Author(s): Andrzej Słomiński, Tae Kang Kim, Shariq Qayyum, Yuwei Song, Zorica Janjetovic, Allen S.W. Oak, Radomir M. Slominski, Chander Raman, Joanna Stefan, Carlos A. Mier‐Aguilar, Venkatram R. Atigadda, David K. Crossman, Andriy G. Golub, Yaroslav V. Bilokin, Edith K.Y. Tang, Jake Y. Chen, Robert C. Tuckey, Anton M. Jetten
Software Mentions: 4
Published: over 3 years ago

10.3390/s150818613

Scalable and Cost-Effective Assignment of Mobile Crowdsensing Tasks Based on Profiling Trends and Prediction: The ParticipAct Living Lab Experience
Cited by: 28
Author(s): Paolo Bellavista, Antonio Corradi, Luca Foschini, Raffaele Ianniello
Software Mentions: 4
Published: over 9 years ago

10.3389/fnins.2021.667373

A High Accuracy Electrographic Seizure Classifier Trained Using Semi-Supervised Labeling Applied to a Large Spectrogram Dataset
Cited by: 5
Author(s): Wade Barry, Sharanya Arcot Desai, Thomas K. Tcheng, Martha J. Morrell
Software Mentions: 4
Published: over 3 years ago

10.1186/s12884-021-03807-4

Comparison of first trimester dating methods for gestational age estimation and their implication on preterm birth classification in a North Indian cohort
Cited by: 4
Author(s): Ramya Vijayram, Nikhita Damaraju, Ashley Xavier, Bapu Koundinya Desiraju, Ramachandran Thiruvengadam, Sumit Misra, Shilpa Chopra, Ashok Khurana, Nitya Wadhwa, Raghunathan Rengaswamy, Himanshu Sinha, Shinjini Bhatnagar
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0093344

Mapping Topographic Structure in White Matter Pathways with Level Set Trees
Cited by: 5
Author(s): Brian P. Kent, Alessandro Rinaldo, Fang‐Cheng Yeh, Timothy Verstynen
Software Mentions: 3
Published: over 10 years ago

10.1371/journal.pone.0240356

Perceptual holistic color combination analysis of Papilionidae butterflies as aesthetic objects
Cited by: 1
Author(s): Erina Kakehashi, Keiichi Muramatsu, Hiroki Hibino
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pone.0238143

Estimation of the shared mobility demand based on the daily regularity of the urban mobility and the similarity of individual trips
Cited by: 7
Author(s): Cyril Veve, Nicolas Chiabaut
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pone.0230458

Cultivar-specific nutritional status of potato (Solanum tuberosum L.) crops
Cited by: 12
Author(s): Zonlehoua Coulibali, Athyna N. Cambouris, Léon‐Étienne Parent
Software Mentions: 3
Published: over 4 years ago

10.3389/fneur.2019.01252

Neurodegenerative Disease–Associated Variants in TREM2 Destabilize the Apical Ligand-Binding Region of the Immunoglobulin Domain
Cited by: 19
Author(s): Hunter B. Dean, Erik D. Roberson, Yuhua Song
Software Mentions: 3
Published: almost 5 years ago

10.3390/molecules25051119

Identification and Characterization of Cannabimovone, a Cannabinoid from Cannabis sativa, as a Novel PPARγ Agonist via a Combined Computational and Functional Study
Cited by: 19
Author(s): Fabio Arturo Iannotti, Fabrizia De Maio, Elisabetta Panza, Giovanni Appendino, Orazio Taglialatela‐Scafati, Luciano De Petrocellis, Pietro Amodeo, Rosa Vitale
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0248840

Main control factors affecting mechanical oil recovery efficiency in complex blocks identified using the improved k-means algorithm
Cited by: 2
Author(s): Qiuyu Lu, Suling Wang, Minghu Jiang, Yanchun Li, Kun Dong
Software Mentions: 2
Published: over 3 years ago

10.1186/s12859-017-1967-3

CoMet: a workflow using contig coverage and composition for binning a metagenomic sample with high precision
Cited by: 15
Author(s): Damayanthi Herath, Sen‐Lin Tang, Kshitij Tandon, David C. Ackland, Saman K. Halgamuge
Software Mentions: 2
Published: almost 7 years ago

10.1007/s00401-019-02023-x

Depopulation of dense α-synuclein aggregates is associated with rescue of dopamine neuron dysfunction and death in a new Parkinson’s disease model
Cited by: 73
Author(s): Michal̵ Węgrzynowicz, Dana Bar-On, Laura Calò, Oleg Anichtchik, Mariangela Iovino, Jing Xia, Sergey Ryazanov, Andrei Leonov, Armin Giese, Jeffrey W. Dalley, Christian Griesinger, Uri Ashery, Maria Grazia Spillantini
Software Mentions: 2
Published: over 5 years ago

10.1523/ENEURO.0494-20.2021

Large-Scale and Multiscale Networks in the Rodent Brain during Novelty Exploration
Cited by: 3
Author(s): Michael X Cohen, Bernhard Englitz, Arthur S. C. França
Software Mentions: 2
Published: over 3 years ago

Projects: cran: dbscan

Papers Mentioning dbscan 49