Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: Expression

https://packages.ecosyste.ms/registries/pypi.org/packages/Expression

Practical functional programming for Python 3.9+
51 versions
Latest release: about 1 year ago
8 dependent packages
13,364 downloads last month

Papers Mentioning Expression 200

10.1093/bioinformatics/bty947
SkeletalVis: an exploration and meta-analysis data portal of cross-species skeletal transcriptomics data
Cited by: 19
Author(s): Jamie Soul, Timothy E. Hardingham, Raymond P. Boot-Handford, Jean-Marc Schwartz
Software Mentions: 18
Published: about 6 years ago
10.1186/s12859-018-2486-6
iDEP: an integrated web application for differential expression and pathway analysis of RNA-Seq data
Cited by: 650
Author(s): Xijin Ge, Eun Wo Son, Runan Yao
Software Mentions: 14
Published: about 6 years ago
10.1016/j.ebiom.2015.09.027
Distinct Transcriptional and Anti-Mycobacterial Profiles of Peripheral Blood Monocytes Dependent on the Ratio of Monocytes: Lymphocytes
Cited by: 58
Author(s): Vivek Naranbhai, Helen A. Fletcher, Rachel Tanner, Matthew K. O’Shea, Helen McShane, Benjamin P. Fairfax, Julian C. Knight, Adrian V. S. Hill
Software Mentions: 9
Published: about 9 years ago
10.3389/fonc.2020.01254
Unraveling the Complexity of the Cancer Microenvironment With Multidimensional Genomic and Cytometric Technologies
Cited by: 39
Author(s): Natasja L. de Vries, Ahmed Mahfouz, Frits Koning, Noel F.C.C. de Miranda
Software Mentions: 8
Published: over 4 years ago
10.1371/journal.pone.0240824
A novel computational approach for predicting complex phenotypes in Drosophila (starvation-sensitive and sterile) by deriving their gene expression signatures from public data
Cited by: 0
Author(s): Dobril Ivanov, Gerrit Bostelmann, Benoît Lan-Leung, Julie Williams, Linda Partridge, Valentina Escott‐Price, Janet M. Thornton
Software Mentions: 8
Published: about 4 years ago
10.1186/s12864-021-07659-2
Inferring and analyzing gene regulatory networks from multi-factorial expression data: a complete and interactive suite
Cited by: 15
Author(s): Océane Cassan, Sophie Lèbre, Antoine Martin
Software Mentions: 8
Published: over 3 years ago
10.12688/f1000research.6157.2
ViennaNGS: A toolbox for building efficient next- generation sequencing analysis pipelines
Cited by: 21
Author(s): Michael T. Wolfinger, Jörg Fallmann, Florian Eggenhofer, Fabian Amman
Software Mentions: 6
Published: over 9 years ago
10.3389/fgene.2020.570255
A Review of Integrative Imputation for Multi-Omics Datasets
Cited by: 48
Author(s): Meng Song, Jonathan Greenbaum, Joseph Luttrell, Weihua Zhou, Chong Wu, Hui Shen, Ping Gong, Chaoyang Zhang, Hong Wen Deng
Software Mentions: 6
Published: over 4 years ago
10.7554/eLife.30860
A high-resolution mRNA expression time course of embryonic development in zebrafish
Cited by: 218
Author(s): Richard White, John Collins, Ian Sealy, Neha Wali, Christopher M. Dooley, Zsofia Digby, Derek L. Stemple, Daniel N. Murphy, Konstantinos Billis, Thibaut Hourlier, Anja Füllgrabe, Matthew P Davis, Anton J. Enright, Elisabeth M Busch-Nentwich
Software Mentions: 6
Published: about 7 years ago
10.1186/s13071-021-04717-2
Transcriptomic profiling of three-dimensional cholangiocyte spheroids long term exposed to repetitive Clonorchis sinensis excretory-secretory products
Cited by: 4
Author(s): Jung Woong Kim, Junyeong Yi, Jin‐Hong Park, Ji Hoon Jeong, Jin-Ho Kim, Jihee Won, Seok Chung, Tong Soo Kim, Jhang Ho Pak
Software Mentions: 6
Published: almost 4 years ago
10.1186/s12920-018-0358-6
Integrative bioinformatics analysis characterizing the role of EDC3 in mRNA decay and its association to intellectual disability
Cited by: 5
Author(s): Ute Scheller, Kathrin Pfisterer, Steffen Uebe, Arif B. Ekici, André Reis, Rami Abou Jamra, Fulvia Ferrazzi
Software Mentions: 6
Published: over 6 years ago
10.1038/s41598-020-69905-z
A lncRNA landscape in breast cancer reveals a potential role for AC009283.1 in proliferation and apoptosis in HER2-enriched subtype
Cited by: 20
Author(s): Alberto Cedro‐Tanda, Magdalena Ríos-Romero, Sandra Romero-Córdoba, Mireya Cisneros-Villanueva, Rosa Rebollar-Vega, Luis Alfaro-Ruiz, Silvia Jiménez-Morales, Carlos Alberto Domínguez-Reyes, Felipe Villegas-Carlos, Alberto Tenorio-Torres, Verónica Bautista-Piña, Fredy Omar Beltrán-Anaya, Alfredo Hidalgo‐Miranda
Software Mentions: 6
Published: over 4 years ago
10.7554/eLife.03346
Identification of the transcription factor ZEB1 as a central component of the adipogenic gene regulatory network
Cited by: 82
Author(s): Carine Gubelmann, Petra Schwalie, Sunil K. Raghav, Eva Röder, Tenagne Delessa, Elke Kiehlmann, Sebastian M. Waszak, Andrea Corsinotti, Gilles Udin, Wiebke Holcombe, Gottfried Rudofsky, Didier Trono, Christian Wolfrum, Bart Deplancke
Software Mentions: 5
Published: over 10 years ago
10.1186/s12934-015-0226-4
An analysis of the changes in soluble hydrogenase and global gene expression in Cupriavidus necator (Ralstonia eutropha) H16 grown in heterotrophic diauxic batch culture
Cited by: 17
Author(s): Bat-Erdene Jugder, Zhiliang Chen, Darren Tan Tek Ping, Hélène Lebhar, Jeffrey Welch, Christopher P. Marquis
Software Mentions: 5
Published: almost 10 years ago
10.1038/s41598-017-01767-4
Systems Immunology of Diabetes-Tuberculosis Comorbidity Reveals Signatures of Disease Complications
Cited by: 78
Author(s): César Augusto Prada-Medina, Kiyoshi F. Fukutani, Nathella Pavan Kumar, Leonardo Gil-Santana, Subash Babu, Flávio Lichtenstein, Kim West, Sivakumar Shanmugam, Pradeep A. Menon, Vijay Viswanathan, Bruno B. Andrade, Hidehiko Nakaya, Hardy Kornfeld
Software Mentions: 5
Published: over 7 years ago
10.1371/journal.pone.0110134
Integrated Exon Level Expression Analysis of Driver Genes Explain Their Role in Colorectal Cancer
Cited by: 20
Author(s): Mohammad Azhar Aziz, Sathish Periyasamy, Zeyad Yousef, Ibrahim AlAbdulkarim, Majed Al Otaibi, Abdulaziz Alfahed, Glowi Alasiri
Software Mentions: 4
Published: over 10 years ago
10.1371/journal.pone.0146447
Transcriptome Analysis of Honeybee (Apis Mellifera) Haploid and Diploid Embryos Reveals Early Zygotic Transcription during Cleavage
Cited by: 30
Author(s): Camilla Valente Pires, Flávia Cristina de Paula Freitas, Alexandre S. Cristino, Peter K. Dearden, Zilá Luz Paulino Simões
Software Mentions: 4
Published: about 9 years ago
10.3389/fonc.2021.650828
Integrative Analysis of a Novel Eleven-Small Nucleolar RNA Prognostic Signature in Patients With Lower Grade Glioma
Cited by: 6
Author(s): Teng Deng, Yizhen Gong, Xiwen Liao, Xiangkun Wang, Xin Zhou, Guangzhi Zhu, Ligen Mo
Software Mentions: 4
Published: over 3 years ago
10.3389/fonc.2021.685515
Regulatory Network Analysis of Mutated Genes Based on Multi-Omics Data Reveals the Exclusive Features in Tumor Immune Microenvironment Between Left-Sided and Right-Sided Colon Cancer
Cited by: 10
Author(s): Tianfei Yi, Yuwei Zhang, Derry Minyao Ng, Yang Xi, Meng Ye, Lvjun Cen, Jianjiong Li, Xiaoxiang Fan, Yanguo Li, Shiyun Hu, Hao Rong, Yangyang Xie, Guofang Zhao, Leyi Chen, Chen Chen, Shujing Ni, Jiaying Mi, Xiaoyu Dai, Qi Liao
Software Mentions: 4
Published: over 3 years ago
10.1155/2013/192548
Expression of Bmi-1 in Pediatric Brain Tumors as a New Independent Prognostic Marker of Patient Survival
Cited by: 10
Author(s): Shirin Farivar, Reza Keikha, Reza Shiari, Farzaneh Jadali
Software Mentions: 4
Published: about 12 years ago
10.7554/eLife.53127
Translational control of one-carbon metabolism underpins ribosomal protein phenotypes in cell division and longevity
Cited by: 23
Author(s): Nairita Maitra, Chi He, Heidi M. Blank, Mitsuhiro Tsuchiya, Birgit Schilling, Matt Kaeberlein, Rodolfo Aramayo, Brian K. Kennedy, Michael Polymenis
Software Mentions: 4
Published: over 4 years ago
10.3390/ijms22052669
Additive Role of Immune System Infiltration and Angiogenesis in Uveal Melanoma Progression
Cited by: 18
Author(s): Sandra García-Mulero, M. Henar Alonso, L.P. del Carpio, Rebeca Sanz‐Pamplona, Josep María Piulats
Software Mentions: 4
Published: almost 4 years ago
10.1038/s41598-020-66747-7
Assessment of Luminal and Basal Phenotypes in Bladder Cancer
Cited by: 77
Author(s): Charles C. Guo, Jolanta Bondaruk, Hui Yao, Ziqiao Wang, Li Zhang, Sangkyou Lee, June Goo Lee, David Cogdell, Miao Zhang, Guoliang Yang, Vipulkumar Dadhania, Woonyoung Choi, Peng Wei, Jianjun Gao, Dan Theodorescu, Christopher J. Logothetis, Colin P. Dinney, Marek Kimmel, John N. Weinstein, David J. McConkey, Bogdan Czerniak
Software Mentions: 3
Published: over 4 years ago
10.1186/s12885-015-1994-2
Low-power photodynamic therapy induces survival signaling in perihilar cholangiocarcinoma cells
Cited by: 28
Author(s): Ruud Weijer, Mans Broekgaarden, Rowan F. van Golen, Esther Bulle, E. E. S. Nieuwenhuis, Aldo Jongejan, Perry D. Moerland, Antoine H. C. van Kampen, Thomas M. van Gulik, Michal Heger
Software Mentions: 3
Published: about 9 years ago
10.3389/fgene.2018.00193
A Novel Loss-of-Function Variant in Transmembrane Protein 263 (TMEM263) of Autosomal Dwarfism in Chicken
Cited by: 13
Author(s): Zhou Wu, Martijn F.L. Derks, Bert Dibbits, Hendrik Jan Megens, M.A.M. Groenen, R.P.M.A. Crooijmans
Software Mentions: 3
Published: over 6 years ago
10.3390/biom9090429
The Role of Circular RNA CDR1as/ciRS-7 in Regulating Tumor Microenvironment: A Pan-Cancer Analysis
Cited by: 81
Author(s): Zou, Zihao Zheng, Deng Deng, Kan Yang, Weibo Xie, Tang Tang, Weibo Xie
Software Mentions: 3
Published: over 5 years ago
10.1155/2020/3126592
Identification of Heat-Responsive Genes in Guar [<i>Cyamopsis tetragonoloba</i> (L.) Taub]
Cited by: 8
Author(s): Aref Alshameri, Fahad Al‐Qurainy, Abdel-Rhman Z. Gaafar, Salim Khan, Mohammad Nadeem, Saleh Alansi
Software Mentions: 3
Published: over 4 years ago
10.1371/journal.pcbi.1003837
A Systems Approach to Predict Oncometabolites via Context-Specific Genome-Scale Metabolic Networks
Cited by: 59
Author(s): Hojung Nam, Miguel A. Campodonico, Aarash Bordbar, Daniel R. Hyduke, Sangwoo Kim, Daniel C. Zielinski, Bernhard Ø. Palsson
Software Mentions: 3
Published: over 10 years ago
10.1186/s12862-019-1415-2
Rapid functional divergence after small-scale gene duplication in grasses
Cited by: 19
Author(s): Xuening Jiang, Raquel Assis
Software Mentions: 3
Published: over 5 years ago
10.3390/genes12091381
No Expression Divergence despite Transcriptional Interference between Nested Protein-Coding Genes in Mammals
Cited by: 1
Author(s): Raquel Assis
Software Mentions: 3
Published: over 3 years ago
10.1186/s11658-021-00258-9
Association of cyclin-dependent kinase inhibitor 2B antisense RNA 1 gene expression and rs2383207 variant with breast cancer risk and survival
Cited by: 11
Author(s): Shahad W. Kattan, Yahya Hasan Hobani, Sameerah Shaheen, Sara H. Mokhtar, Mohammad Hussein, Eman A. Toraih, Manal S. Fawzy, Hussein Abdelaziz Abdalla
Software Mentions: 3
Published: almost 4 years ago
10.3390/ijms21020547
Open Data for Differential Network Analysis in Glioma
Cited by: 8
Author(s): Claire Jean-Quartier, Fleur Jeanquartier, Andreas Holzinger
Software Mentions: 3
Published: about 5 years ago
10.1007/s12079-018-0456-4
Oxygen drives hepatocyte differentiation and phenotype stability in liver cell lines
Cited by: 29
Author(s): Martien van Wenum, Aziza A. A. Adam, Vincent A. van der Mark, Jung-Chin Chang, Manon E. Wildenberg, Erik Hendriks, Aldo Jongejan, Perry D. Moerland, Thomas M. van Gulik, Ronald P.J. Oude Elferink, R. A. F. M. Chamuleau, Ruurdtje Hoekstra
Software Mentions: 3
Published: almost 7 years ago
10.3390/ijms22136674
Sub-Chronic Effects of Slight PAH- and PCB-Contaminated Mesocosms in Paracentrotus lividus Lmk: A Multi-Endpoint Approach and De Novo Transcriptomic
Cited by: 7
Author(s): Luisa Albarano, Valerio Zupo, Davide Caramiello, Maria Toscanesi, Marco Trifuoggi, Marco Guida, Giovanni Libralato, Maria Costantini
Software Mentions: 3
Published: over 3 years ago
10.1093/database/baz106
Enabling semantic queries across federated bioinformatics databases
Cited by: 22
Author(s): Ana Claudia Sima, Tarcisio Mendes de Farias, Erich Zbinden, Maria Anisimova, Manuel Gil, Heinz Stockinger, Kurt Stockinger, Marc Robinson‐Rechavi, Christophe Dessimoz
Software Mentions: 3
Published: about 6 years ago
10.1038/s41597-021-00890-2
An integrated landscape of protein expression in human cancer
Cited by: 32
Author(s): Andrew F. Jarnuczak, Hanna Najgebauer, Mitra Barzine, Deepti Jaiswal Kundu, Fatemeh Zamanzad Ghavidel, Yasset Perez‐Riverol, Irene Papatheodorou, Alvis Brāzma, Juan Antonio Vizcaíno
Software Mentions: 3
Published: over 3 years ago
10.18632/oncotarget.22622
LINCRNA00273 promotes cancer metastasis and its G-Quadruplex promoter can serve as a novel target to inhibit cancer invasiveness
Cited by: 12
Author(s): Samarjit Jana, Jagannath Jana, Kartick Patra, Soma Mondal, Jyotsna Bhat, Arnab Sarkar, Pallabi Sengupta, Anindya Biswas, Meghomukta Mukherjee, Satya Prakash Tripathi, Rahul P. Gangwal, Joyita Hazra, Abhay T. Sangamwar, Gopeswar Mukherjee, Shamee Bhattacharjee, Deba Prasad Mandal, Subhrangsu Chatterjee
Software Mentions: 3
Published: about 7 years ago
10.3389/fcell.2020.594112
Expression of m6A Regulators Correlated With Immune Microenvironment Predicts Therapeutic Efficacy and Prognosis in Gliomas
Cited by: 52
Author(s): Shengchao Xu, Lu Tang, Guo Dai, Chengke Luo, Zhixiong Liu
Software Mentions: 3
Published: about 4 years ago
10.1093/bib/bby025
Navigating the disease landscape: knowledge representations for contextualizing molecular signatures
Cited by: 16
Author(s): Mansoor Saqi, Artem Lysenko, Yike Guo, Tatsuhiko Tsunoda, Charles Auffray
Software Mentions: 3
Published: almost 7 years ago
10.1186/1471-2105-10-191
Unsupervised assessment of microarray data quality using a Gaussian mixture model
Cited by: 4
Author(s): Brian E. Howard, Beate Sick, Steffen Heber
Software Mentions: 3
Published: over 15 years ago
10.1371/journal.pgen.1000811
Maternal Ethanol Consumption Alters the Epigenotype and the Phenotype of Offspring in a Mouse Model
Cited by: 272
Author(s): Nina Kaminen‐Ahola, Arttu Ahola, A. Murat Maga, Kylie‐Ann Mallitt, Paul Fahey, Timothy C. Cox, Emma Whitelaw, Suyinn Chong
Software Mentions: 3
Published: about 15 years ago
10.1186/1471-2164-10-202
Distinct patterns of gene and protein expression elicited by organophosphorus pesticides in Caenorhabditis elegans
Cited by: 43
Author(s): John A. Lewis, M. Szilágyi, Elizabeth Gehman, William E. Dennis, David A. Jackson
Software Mentions: 3
Published: about 16 years ago
10.7554/eLife.43186
Arid3a regulates nephric tubule regeneration via evolutionarily conserved regeneration signal-response enhancers
Cited by: 19
Author(s): Naoki Suzuki, Kodai Hirano, Hitoshi Ogino, Hiroki Ochi
Software Mentions: 2
Published: about 6 years ago
10.1186/1471-2164-14-343
An integrative “omics” approach identifies new candidate genes to impact aroma volatiles in peach fruit
Cited by: 46
Author(s): G. Sánchez, Mónica Venegas-Calerón, Joaquı́n J. Salas, Antonio J. Monforte, M. L. Badenes, Antonio Granell
Software Mentions: 2
Published: about 12 years ago
10.3390/ijms21030719
Combined Effects of Diatom-Derived Oxylipins on the Sea Urchin Paracentrotus lividus
Cited by: 8
Author(s): Roberta Esposito, Nadia Ruocco, Luisa Albarano, Adrianna Ianora, Loredana Manfra, Giovanni Libralato, Maria Costantini
Software Mentions: 2
Published: almost 5 years ago
10.1371/journal.pone.0148351
Transcriptional Analysis of T Cells Resident in Human Skin
Cited by: 27
Author(s): Jane Li, Moshe Olshansky, Francis R. Carbone, Z. Joel
Software Mentions: 2
Published: almost 9 years ago
10.3390/ijms22189662
Alteration of the Early Development Environment by Maternal Diet and the Occurrence of Autistic-like Phenotypes in Rat Offspring
Cited by: 4
Author(s): Kinga Gawlińska, Dawid Gawliński, Ewelina Kowal-Wiśniewska, Małgorzata Jarmuż-Szymczak, Małgorzata Filip
Software Mentions: 2
Published: over 3 years ago
10.1371/journal.pone.0158035
Effect of Hyperglycemia on Gene Expression during Early Organogenesis in Mice
Cited by: 11
Author(s): Jing Zhao, Theodorus B. M. Hakvoort, A.M. Willemsen, Aldo Jongejan, Milka Sokolović, Edward J. Bradley, Vincent C.J. de Boer, Frank Baas, Antoine H. C. van Kampen, Wouter H. Lamers
Software Mentions: 2
Published: over 8 years ago
10.1371/journal.pone.0212089
In vitro evaluation of the protective effects of plant extracts against amyloid-beta peptide-induced toxicity in human neuroblastoma SH-SY5Y cells
Cited by: 23
Author(s): Ana Luiza Sereia, Marcelo Tempesta de Oliveira, Adrivânio Baranoski, Leila Larisa Medeiros Marques, Fabianne Martins Ribeiro, Raquel Garcia Isolani, Daniela Cristina de Medeiros Araújo, Danielly Chierrito, Danielle Lazarin-Bidóia, Acácio Antônio Ferreira Zielinski, Cláudio Roberto Novello, Celso Vataru Nakamura, Mário Mantovani, João Carlos Palazzo de Mello
Software Mentions: 2
Published: almost 6 years ago
10.1371/journal.pone.0112524
Prediction of Metabolic Flux Distribution from Gene Expression Data Based on the Flux Minimization Principle
Cited by: 42
Author(s): Hyun‐Seob Song, Jaques Reifman, Anders Wallqvist
Software Mentions: 2
Published: about 10 years ago
10.1186/s12920-014-0060-2
A common gene expression signature in Huntington’s disease patient brain regions
Cited by: 46
Author(s): Andreas Neueder, Gillian P. Bates
Software Mentions: 2
Published: about 10 years ago
10.1371/journal.pone.0175116
Analyses of the probiotic property and stress resistance-related genes of Lactococcus lactis subsp. lactis NCDO 2118 through comparative genomics and in vitro assays
Cited by: 39
Author(s): Lívia Costa de Oliveira, Tessália Diniz Luerce Saraiva, Wanderson M. Silva, Ulisses de Pádua Pereira, Bruno C. Campos, Leandro de Jesus Benevides, Flávia Souza Rocha, Henrique César Pereira Figueiredo, Vasco Azevedo, Siomar C. Soares
Software Mentions: 2
Published: almost 8 years ago
10.3390/molecules25051028
Protective Effect of Genistein against Compound 48/80 Induced Anaphylactoid Shock via Inhibiting MAS Related G Protein-Coupled Receptor X2 (MRGPRX2)
Cited by: 20
Author(s): Mukesh Kumar, K. N. Singh, Karthi Duraisamy, Ahmed A. Allam, Jamaan S. Ajarem, Billy K. C. Chow
Software Mentions: 2
Published: almost 5 years ago
10.1186/s12864-016-2375-1
Multi-omic measurement of mutually exclusive loss-of-function enriches for candidate synthetic lethal gene pairs
Cited by: 22
Author(s): Mark Wappett, Austin Dulak, Zheng Yang, Abdullatif Al-Watban, James R. Bradford, Jonathan R. Dry
Software Mentions: 2
Published: about 9 years ago
10.1186/1479-5876-11-266
Identification of serum insulin-like growth factor binding protein 1 as diagnostic biomarker for early-stage alcohol-induced liver disease
Cited by: 19
Author(s): Heng Hong Li, Kathryn Doiron, Andrew D. Patterson, Frank J. Gonzalez, Albert J. Fornace
Software Mentions: 2
Published: about 11 years ago
10.1371/journal.pone.0246607
Frameshift variant in MITF gene in a large family with Waardenburg syndrome type II and a co-segregation of a C2orf74 variant
Cited by: 0
Author(s): Maan Abdullah Albarry, Muhammad Latif, Ahdab Qasem Alreheli, Mohammed Awadh, Ahmad Almatrafi, Alia M. Albalawi, Sulman Basit
Software Mentions: 2
Published: almost 4 years ago
10.1371/journal.pone.0249567
HIV-associated nephropathy: Protocol and rationale for an exploratory genotype-phenotype study in a sub-Saharan African population
Cited by: 0
Author(s): Aminu Abba Yusuf, Baba Maiyaki Musa, Najibah A. Galadanci, Musa Babashani, AZ Mohammed, Donna J. Ingles, Agnes B. Fogo, C. William Wester, Muktar H. Aliyu
Software Mentions: 2
Published: almost 4 years ago
10.3390/cancers12051227
LINC00261 Is Differentially Expressed in Pancreatic Cancer Subtypes and Regulates a Pro-Epithelial Cell Identity
Cited by: 15
Author(s): Ágnes Dorn, Markus Glaß, Carolin T. Neu, Beate Heydel, Stefan Hüttelmaier, Tony Gutschner, Monika Hämmerle
Software Mentions: 2
Published: over 4 years ago
10.1016/j.cell.2015.04.042
In Vivo Imaging Reveals Extracellular Vesicle-Mediated Phenocopying of Metastatic Behavior
Cited by: 670
Author(s): Anoek Zomer, Carrie Maynard, Frederik J. Verweij, Alwin Kamermans, Ronny Schäfer, Evelyne Beerling, Raymond M. Schiffelers, Elzo de Wit, Jordi Berenguer, Saskia I.J. Ellenbroek, Thomas Würdinger, D. Michiel Pegtel, Jacco van Rheenen
Software Mentions: 2
Published: over 9 years ago
10.22074/cellj.2020.6582
Cardiac Differentiation of Adipose Tissue-Derived Stem Cells Is Driven by BMP4 and bFGF but Counteracted by 5-Azacytidine and Valproic Acid.
Cited by: 3
Author(s): Sanaz Hasani, Arash Javeri, Asadollah Asadi, Masoumeh Fakhr Taha
Software Mentions: 2
Published: over 4 years ago
10.22074/cellj.2021.7139
Long-Term Effects of Hippocampal Low-Frequency Stimulation on Pro-Inflammatory Factors and Astrocytes Activity in Kindled Rats.
Cited by: 1
Author(s): Razieh Rohani, Abbas Aliaghaei, Mohammad‐Amin Abdollahifar, Yousef Sadeghi, Leila Zare, Samaneh Dehghan, Mohammad Hassan Heidari
Software Mentions: 2
Published: almost 4 years ago
10.22074/cellj.2020.6193
Repression of TGF-β Signaling in Breast Cancer Cells by miR-302/367 Cluster.
Cited by: 4
Author(s): Mona Ahmadalizadeh Khanehsar, Moslem Hoseinbeyki, Masoumeh Fakhr Taha, Arash Javeri
Software Mentions: 2
Published: about 5 years ago
10.1161/CIRCULATIONAHA.121.053797
Prioritizing the Role of Major Lipoproteins and Subfractions as Risk Factors for Peripheral Artery Disease
Cited by: 33
Author(s): Michael G. Levin, Verena Zuber, Venexia Walker, Derek Klarin, Julie Lynch, Rainer Malik, Aaron W. Aday, Leonardo Bottolo, Aruna D. Pradhan, Martin Dichgans, Kyong‐Mi Chang, Daniel J. Rader, Philip S. Tsao, Benjamin F. Voight, Dipender Gill, Stephen Burgess, Scott M. Damrauer
Software Mentions: 2
Published: over 3 years ago
10.1093/database/bav019
BioXpress: an integrated RNA-seq-derived gene expression database for pan-cancer analysis
Cited by: 75
Author(s): Qing Wan, Hayley Dingerdissen, Fan Yu, Naila Gulzar, Yang Pan, Tsung-Jung Wu, Yan Cheng, Haichen Zhang, Raja Mazumder
Software Mentions: 2
Published: about 10 years ago
10.1093/database/bay118
RTPDB: a database providing associations between genetic variation or expression and cancer prognosis with radiotherapy-based treatment
Cited by: 3
Author(s): Chengdong Zhang, Yuan Yang, Huanhuan Chen, Ting Zhang, Qiang Wang, Yuan Liang, Liang Zhang, Yan Zhou
Software Mentions: 2
Published: about 7 years ago
10.1186/1471-2164-11-698
Comparative profiling of the transcriptional response to iron restriction in six serotypes of Actinobacillus pleuropneumoniae with different virulence potential
Cited by: 21
Author(s): Kirstine Klitgaard, Carsten Friis, Øystein Angen, Mette Boye
Software Mentions: 2
Published: about 15 years ago
10.1186/1471-2164-15-299
Identification and characterization of transcript polymorphisms in soybean lines varying in oil composition and content
Cited by: 46
Author(s): Wolfgang Goettel, Eric Xia, Robert G. Upchurch, Mingli Wang, Pengyin Chen, Yong-Qiang Charles An
Software Mentions: 2
Published: over 10 years ago
10.7717/peerj.6863
A novel conserved family of Macro-like domains—putative new players in ADP-ribosylation signaling
Cited by: 7
Author(s): Małgorzata Dudkiewicz, Krzysztof Pawłowski
Software Mentions: 2
Published: over 5 years ago
10.3389/fbioe.2020.00018
CALISTA: Clustering and LINEAGE Inference in Single-Cell Transcriptional Analysis
Cited by: 8
Author(s): Nan Gao, Thomas Hartmann, Tao Fang, Rudiyanto Gunawan
Software Mentions: 2
Published: almost 5 years ago
10.3389/fcell.2021.657149
The Transcription Regulator Patz1 Is Essential for Neural Stem Cell Maintenance and Proliferation
Cited by: 5
Author(s): Sara Mancinelli, Marianna Vitiello, Maria Donnini, Francesca Mantile, Giuseppe Palma, Antonio Luciano, Claudio Arra, Laura Cerchia, Giovanna L. Liguori
Software Mentions: 2
Published: almost 4 years ago
10.1371/journal.pcbi.1008453
DeepPheno: Predicting single gene loss-of-function phenotypes using an ontology-aware hierarchical classifier
Cited by: 14
Author(s): Maxat Kulmanov, Robert Hoehndorf
Software Mentions: 2
Published: about 4 years ago
10.3389/fgene.2021.652878
Polymorphism in INSR Locus Modifies Risk of Atrial Fibrillation in Patients on Thyroid Hormone Replacement Therapy
Cited by: 1
Author(s): Enrique Soto-Pedre, Moneeza K Siddiqui, Cyrielle Maroteau, Adem Y. Dawed, Alex S.F. Doney, Colin N.A. Palmer, Ewan R. Pearson, Graham Leese
Software Mentions: 2
Published: over 3 years ago
10.3389/fimmu.2017.00620
Molecular Signatures of Human Regulatory T Cells in Colorectal Cancer and Polyps
Cited by: 17
Author(s): Nor Adzimah Johdi, Kamel Ait-Tahar, Ismail Sagap, A. Rahman A. Jamal
Software Mentions: 2
Published: over 7 years ago
10.3389/fimmu.2020.00630
Human Alveolar and Splenic Macrophage Populations Display a Distinct Transcriptomic Response to Infection With Mycobacterium tuberculosis
Cited by: 9
Author(s): Lelia Lavalett, Héctor Ortega, Luis F. Barrera
Software Mentions: 2
Published: almost 5 years ago
10.3389/fimmu.2021.634497
In vitro Evaluation of Programmed Cell Death in the Immune System of Pacific Oyster Crassostrea gigas by the Effect of Marine Toxins
Cited by: 9
Author(s): Norma Estrada, Erick J. Núñez-Vázquez, Alejandra Palacios, Felipe Ascencio, Laura T. Guzmán-Villanueva, Rubén G. Contreras
Software Mentions: 2
Published: almost 4 years ago
10.3389/fmicb.2017.00126
Exo-miRExplorer: A Comprehensive Resource for Exploring and Comparatively Analyzing Exogenous MicroRNAs
Cited by: 5
Author(s): Ling‐Ling Zheng, Kai-Wen Deng, An-Cheng Deng, Jie Wu, Jianhua Yang, Zhao‐Rong Lun, Liang‐Hu Qu
Software Mentions: 2
Published: almost 8 years ago
10.1155/2014/941486
Upregulation of Pluripotency Markers in Adipose Tissue-Derived Stem Cells by miR-302 and Leukemia Inhibitory Factor
Cited by: 18
Author(s): Masoumeh Fakhr Taha, Arash Javeri, Sara Rohban, Seyed Javad Mowla
Software Mentions: 2
Published: about 11 years ago
10.3389/fonc.2021.625838
Correlation Between APOBEC3B Expression and Clinical Characterization in Lower-Grade Gliomas
Cited by: 13
Author(s): Hao Zhang, Ziyang Chen, Zeyu Wang, Ziyu Dai, Zhengang Hu, Xun Zhang, Min Hu, Zhixiong Liu, Quan Cheng
Software Mentions: 2
Published: almost 4 years ago
10.1371/journal.pntd.0009073
Antivenomics and in vivo preclinical efficacy of six Latin American antivenoms towards south-western Colombian Bothrops asper lineage venoms
Cited by: 13
Author(s): Diana Mora-Obando, Davinia Plá, Bruno Lomonte, Jimmy Alexander Guerrero-Vargas, Santiago Ayerbe, Juan J. Calvete
Software Mentions: 2
Published: almost 4 years ago
10.3389/fpls.2021.679654
E183K Mutation in Chalcone Synthase C2 Causes Protein Aggregation and Maize Colorless
Cited by: 3
Author(s): Han Dong, Ling He, Yingjie Xue, Shengzhong Su, Shipeng Li, Xiuming Shan, Hongkui Liu, Nan Jiang, Xuyang Wu, Zhiwu Zhang, Yaping Yuan
Software Mentions: 2
Published: over 3 years ago
10.3389/fpls.2018.00904
Meloidogyne incognita PASSE-MURAILLE (MiPM) Gene Encodes a Cell-Penetrating Protein That Interacts With the CSN5 Subunit of the COP9 Signalosome
Cited by: 16
Author(s): Caroline Bournaud, François-Xavier Gillet, André M. Murad, Emmanuel Bresso, Érika Valéria Saliba Albuquerque, Maria Fatima Grossi-de-Sá
Software Mentions: 2
Published: over 6 years ago
10.1371/journal.pntd.0004226
Deltamethrin Resistance Mechanisms in Aedes aegypti Populations from Three French Overseas Territories Worldwide
Cited by: 70
Author(s): Isabelle Dusfour, Pilar Zorrilla, Amandine Guidez, Jean Issaly, Romain Girod, Laurent Guillaumot, Carlos Robello, Clare Strode
Software Mentions: 2
Published: about 9 years ago
10.1186/1754-6834-5-75
Transcriptome profiling of Zymomonas mobilis under ethanol stress
Cited by: 57
Author(s): Mingxiong He, Bo Wu, Zong Xia Shui, Qi Hu, Wen Guo Wang, Fu Rong Tan, Xiao Yu Tang, Qi Li Zhu, Ke Pan, Qing Li, Xiao Su
Software Mentions: 2
Published: about 13 years ago
10.1371/journal.pone.0035549
Transcriptional Portrait of Actinobacillus pleuropneumoniae during Acute Disease - Potential Strategies for Survival and Persistence in the Host
Cited by: 32
Author(s): Kirstine Klitgaard, Carsten Friis, Tim Kåre Jensen, Øystein Angen, Mette Boye
Software Mentions: 2
Published: almost 13 years ago
10.1186/s13326-016-0055-3
Webulous and the Webulous Google Add-On - a web service and application for ontology building from templates
Cited by: 7
Author(s): Simon Jupp, Tony Burdett, Danielle Welter, Sirarat Sarntivijai, Helen Parkinson, James Malone
Software Mentions: 2
Published: almost 9 years ago
10.1371/journal.pone.0042596
MMP-13 Regulates Growth of Wound Granulation Tissue and Modulates Gene Expression Signatures Involved in Inflammation, Proteolysis, and Cell Viability
Cited by: 83
Author(s): Mervi Toriseva, Matti Laato, Olli Carpén, Suvi T. Ruohonen, Eriika Savontaus, Masaki Inada, Stephen M. Krane, Veli‐Matti Kähäri
Software Mentions: 2
Published: over 12 years ago
10.1371/journal.pone.0054830
Molecular Analysis of Precursor Lesions in Familial Pancreatic Cancer
Cited by: 33
Author(s): Tatjana Crnogorac‐Jurčević, Claude Chelala, Sayka Barry, Taishi Harada, Vipul Bhakta, Sam Lattimore, Stipo Jurčević, Mary P. Bronner, Nick R. Lemoine, Teresa A. Brentnall
Software Mentions: 2
Published: almost 12 years ago
10.1186/1471-2164-9-546
Transcriptional response of rat frontal cortex following acute In Vivo exposure to the pyrethroid insecticides permethrin and deltamethrin
Cited by: 18
Author(s): Joshua Harrill, Zhen Li, Fred A. Wright, Nicholas M. Radio, William R. Mundy, Rogelio Tornero‐Velez, Kevin M. Crofton
Software Mentions: 2
Published: about 16 years ago
10.1371/journal.pone.0066632
Genome-Wide DNA Methylation Analysis Reveals a Potential Mechanism for the Pathogenesis and Development of Uterine Leiomyomas
Cited by: 79
Author(s): Ryo Maekawa, Shun Sato, Yuriko Yamagata, Hiromi Asada, Isao Tamura, Lifa Lee, Maki Okada, Hiroshi Tamura, Eiichi Takaki, Asami Nakai, Norihiro Sugino
Software Mentions: 2
Published: over 11 years ago
10.1186/1471-2164-12-202
Sequencing and characterization of the guppy (Poecilia reticulata) transcriptome
Cited by: 85
Author(s): Bonnie A. Fraser, Cameron J. Weadick, Ilana Janowitz, F. Helen Rodd, Kimberly A. Hughes
Software Mentions: 2
Published: almost 14 years ago
10.1038/s41598-017-12675-y
Multiple regulatory mechanisms of the biological function of NRF3 (NFE2L3) control cancer cell proliferation
Cited by: 59
Author(s): A. M. Masudul Azad Chowdhury, Hiroki Katoh, Atsushi Hatanaka, Hiroko Iwanari, Nanami Nakamura, Takao Hamakubo, Tohru Natsume, Tsuyoshi Waku, Akira Kobayashi
Software Mentions: 2
Published: over 7 years ago
10.1038/s41598-018-24023-9
Toxigenic effects of two benthic diatoms upon grazing activity of the sea urchin: morphological, metabolomic and de novo transcriptomic analysis
Cited by: 25
Author(s): Nadia Ruocco, Susan Costantini, Valerio Zupo, Chiara Lauritano, Davide Caramiello, Adrianna Ianora, Alfredo Budillon, Giovanna Romano, Genoveffa Nuzzo, Giuliana d’Ippolito, Angelo Fontana, Maria Costantini
Software Mentions: 2
Published: almost 7 years ago
10.1371/journal.pone.0107559
Gene Expression and Pathway Analysis of Effects of the CMAH Deactivation on Mouse Lung, Kidney and Heart
Cited by: 15
Author(s): Deug-Nam Kwon, Byungsoo Chang, Jin‐Hoi Kim
Software Mentions: 2
Published: over 10 years ago
10.1038/s41598-018-30893-w
RNAm expression profile of cancer marker genes in HepG2 cells treated with different concentrations of a new indolin-3-one from Pseudomonas aeruginosa
Cited by: 4
Author(s): Lucas Milanez Benício, Ane Stéfano Simionato, Cláudio Roberto Novello, Jeconias Rocha Guimarães, Ingrid Felicidade, Admilton Gonçalves de Oliveira, João Carlos Palazzo de Mello, Mário Mantovani, Andréas Lazaros Chryssafidis, Galdino Andrade, Ilce Mara de Syllos Cólus, Marcelo Tempesta de Oliveira
Software Mentions: 2
Published: over 6 years ago
10.1038/s41598-018-37546-y
Toxicity of diatom-derived polyunsaturated aldehyde mixtures on sea urchin Paracentrotus lividus development
Cited by: 6
Author(s): Nadia Ruocco, Concetta Annunziata, Adrianna Ianora, Giovanni Libralato, Loredana Manfra, Susan Costantini, Maria Costantini
Software Mentions: 2
Published: almost 6 years ago
10.3390/md17030144
Molecular and Morphological Toxicity of Diatom-Derived Hydroxyacid Mixtures to Sea Urchin Paracentrotus lividus Embryos
Cited by: 7
Author(s): Luisa Albarano, Nadia Ruocco, Adrianna Ianora, Giovanni Libralato, Loredana Manfra, Maria Costantini
Software Mentions: 2
Published: almost 6 years ago
10.3390/tropicalmed3020066
Translational Venomics: Third-Generation Antivenomics of Anti-Siamese Russell’s Viper, Daboia siamensis, Antivenom Manufactured in Taiwan CDC’s Vaccine Center
Cited by: 18
Author(s): Libia Sanz, Sarai Quesada-Bernat, Pei-Yu Chen, Cheng Dow Lee, Jen-Ron Chiang, Juan J. Calvete
Software Mentions: 2
Published: over 6 years ago
10.1128/mSphere.00579-17
The Small RNA ncS35 Regulates Growth in Burkholderia cenocepacia J2315
Cited by: 15
Author(s): Sanne Kiekens, Andrea Saß, Filip Van Nieuwerburgh, Dieter Deforce, Tom Coenye
Software Mentions: 2
Published: almost 7 years ago
10.1186/s13046-021-01973-z
RETRACTED ARTICLE: Exosomal DLX6-AS1 from hepatocellular carcinoma cells induces M2 macrophage polarization to promote migration and invasion in hepatocellular carcinoma through microRNA-15a-5p/CXCL17 axis
Cited by: 41
Author(s): Linpei Wang, Jing Lin, Xiang Ma, Dongyao Xu, Cuiping Shi, Wei Wang, Xiaojie Jiang
Software Mentions: 2
Published: over 3 years ago
10.1155/2013/293782
Proteomic Analysis and Label-Free Quantification of the Large <i>Clostridium difficile</i> Toxins
Cited by: 17
Author(s): Hércules Moura, Rebecca R. Terilli, Adrian R. Woolfitt, Yulanda M. Williamson, Glauber Wagner, Thomas A. Blake, Maria I. Solano, John R. Barr
Software Mentions: 2
Published: over 11 years ago