Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Papers: 10.1186/s12859-018-2486-6
https://doi.org/10.1186/s12859-018-2486-6
iDEP: an integrated web application for differential expression and pathway analysis of RNA-Seq data
Cited by: 650
Author(s): Xijin Ge, Eun Wo Son, Runan Yao
Published: about 6 years ago
Software Mentions 14
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distributionPapers that mentioned: 9,583
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in RPapers that mentioned: 6,568
bioconductor: QUBIC
An R package for qualitative biclustering in support of gene co-expression analysesPapers that mentioned: 26
bioconductor: runibic
runibic: row-based biclustering algorithm for analysis of gene expression data in RPapers that mentioned: 2
bioconductor: STRINGdb
STRINGdb - Protein-Protein Interaction Networks and Functional Enrichment AnalysisPapers that mentioned: 82
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of GraphicsPapers that mentioned: 11,441
pypi: Pathway
Pathway is a data processing framework which takes care of streaming data updates for you.Papers that mentioned: 827