Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12859-018-2486-6

https://doi.org/10.1186/s12859-018-2486-6

Cited by: 650
Author(s): Xijin Ge, Eun Wo Son, Runan Yao
Published: over 5 years ago

Software Mentions 14

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
bioconductor: PREDA
Position Related Data Analysis
Papers that mentioned: 5
bioconductor: QUBIC
An R package for qualitative biclustering in support of gene co-expression analyses
Papers that mentioned: 26
bioconductor: ReactomePA
Reactome Pathway Analysis
Papers that mentioned: 171
bioconductor: runibic
runibic: row-based biclustering algorithm for analysis of gene expression data in R
Papers that mentioned: 2
bioconductor: STRINGdb
STRINGdb - Protein-Protein Interaction Networks and Functional Enrichment Analysis
Papers that mentioned: 82
cran: biclust
BiCluster Algorithms
Papers that mentioned: 19
cran: EDA
Energy Decomposition Analysis
Papers that mentioned: 81
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: WGCNA
Weighted Correlation Network Analysis
Papers that mentioned: 3,479
pypi: Expression
Practical functional programming for Python 3.9+
Papers that mentioned: 200
pypi: Pathway
Pathway is a data processing framework which takes care of streaming data updates for you.
Papers that mentioned: 827