bioconductor: STRINGdb | Projects

10.1038/s41598-020-69683-8

Concomitant DNA methylation and transcriptome signatures define epidermal responses to acute solar UV radiation
Cited by: 5
Author(s): Nicholas Holzscheck, Jörn Söhle, T. Schläger, Cassandra Falckenhayn, Elke Grönniger, Ludger Kolbe, Horst Wenck, Lara Terstegen, Lars Kaderali, Marc Winnefeld, Katharina Gorges
Software Mentions: 16
Published: about 4 years ago

10.1371/journal.pcbi.1009317

Meta-analysis of transcriptomic data reveals clusters of consistently deregulated gene and disease ontologies in Down syndrome
Cited by: 11
Author(s): Ilario De Toma, Cesar Sierra, Mara Dierssen
Software Mentions: 14
Published: about 3 years ago

10.1186/s12859-018-2486-6

iDEP: an integrated web application for differential expression and pathway analysis of RNA-Seq data
Cited by: 650
Author(s): Xijin Ge, Eun Wo Son, Runan Yao
Software Mentions: 14
Published: almost 6 years ago

10.26508/lsa.201900461

Drug-induced chromatin accessibility changes associate with sensitivity to liver tumor promotion
Cited by: 5
Author(s): Antonio Vitobello, Juliane Perner, Johanna Beil, Jiang Zhu, Alberto Del Río-Espínola, Laurent Morawiec, Magdalena Westphal, Valérie Dubost, Marc Altorfer, Ulrike Naumann, Arne Mueller, Karen Kapur, Mark Borowsky, Colin J. Henderson, Charles Wolf, Michael Schwarz, Jonathan G. Moggs, Rémi Terranova
Software Mentions: 12
Published: about 5 years ago

10.1186/s12864-016-2737-8

Cogena, a novel tool for co-expressed gene-set enrichment analysis, applied to drug repositioning and drug mode of action discovery
Cited by: 55
Author(s): Zhilong Jia, Ying Liu, Naiyang Guan, Xiaochen Bo, Zhi-Gang Luo, Michael R. Barnes
Software Mentions: 10
Published: over 8 years ago

10.1186/s12943-021-01405-8

Uncovering cancer vulnerabilities by machine learning prediction of synthetic lethality
Cited by: 6
Author(s): Salvatore Benfatto, Özdemirhan Serçin, Francesca R. Dejure, Amir Abdollahi, Frank T. Zenke, Balca R. Mardin
Software Mentions: 9
Published: about 3 years ago

10.1080/15592294.2019.1603963

Identification of DNA methylation patterns predisposing for an efficient response to BCG vaccination in healthy BCG-naïve subjects
Cited by: 32
Author(s): Jyotirmoy Das, Deepti Verma, Mika Gustafsson, Maria Lerm
Software Mentions: 8
Published: over 5 years ago

10.1038/s41598-019-48746-5

Gene Expression Predicts Histological Severity and Reveals Distinct Molecular Profiles of Nonalcoholic Fatty Liver Disease
Cited by: 93
Author(s): Stephen A. Hoang, Abdul M. Oseini, Ryan E. Feaver, Banumathi K. Cole, Amon Asgharpour, Robert Vincent, Mohammad Shadab Siddiqui, Mark Lawson, Nathan Day, Justin M. Taylor, Brian R. Wamhoff, Faridoddin Mirshahi, Melissa J. Contos, Michael O. Idowu, Arun J. Sanyal
Software Mentions: 8
Published: about 5 years ago

10.3390/ijerph18115564

Identification of Hub Genes in Different Stages of Colorectal Cancer through an Integrated Bioinformatics Approach
Cited by: 2
Author(s): Abhijeet R. Patil, Ming-Ying Leung, Sourav Roy
Software Mentions: 8
Published: over 3 years ago

10.3390/ijms19061808

Co-Expression Network Analysis of AMPK and Autophagy Gene Products during Adipocyte Differentiation
Cited by: 8
Author(s): Mahmoud Ahmed, Jin Seok Hwang, Trang Huyen Lai, Sahib Zada, Huynh Quoc Nguyen, Trang Min Pham, Miyong Yun, Deok Ryong Kim
Software Mentions: 7
Published: over 6 years ago

10.1186/s12864-015-2266-x

IRES-dependent translated genes in fungi: computational prediction, phylogenetic conservation and functional association
Cited by: 9
Author(s): Esteban Peguero-Sanchez, Liliana Pardo-López, Enrique Merino
Software Mentions: 6
Published: almost 9 years ago

10.18632/aging.203448

Effects of Siberian fir terpenes extract Abisil on antioxidant activity, autophagy, transcriptome and proteome of human fibroblasts
Cited by: 1
Author(s): Anastasiya V. Lipatova, George S. Krasnov, Pavel Vorobyov, Pavel Melnikov, Olga N. Alekseeva, Yulia S. Vershinina, Alexander G. Brzhozovskiy, Daria Goliusova, Faniya Maganova, Natalia F. Zakirova, Anna V. Kudryavtseva, Alexey Moskalev
Software Mentions: 6
Published: about 3 years ago

10.3389/fnmol.2020.563091

Isolation and Characterization of Multi-Protein Complexes Enriched in the K-Cl Co-transporter 2 From Brain Plasma Membranes
Cited by: 14
Author(s): Joshua L. Smalley, Georgina Kontou, Catherine Choi, Qiang Ren, David Albrecht, Krithika Abiraman, M. Santos, Christopher E. Bope, Tarek Z. Deeb, Paul Davies, Nicholas J. Brandon, Stephen J. Moss
Software Mentions: 6
Published: almost 4 years ago

10.1074/mcp.RA120.001964

Flow-induced Reorganization of Laminin-integrin Networks Within the Endothelial Basement Membrane Uncovered by Proteomics
Cited by: 13
Author(s): Eelke P. Béguin, Esmée F.J. Janssen, Mark Hoogenboezem, Alexander B. Meijer, Arie J. Hoogendijk, Maartje van den Biggelaar
Software Mentions: 5
Published: over 4 years ago

10.18632/aging.102373

Bioinformatic profiling of prognosis-related genes in the breast cancer immune microenvironment
Cited by: 29
Author(s): Fang Bai, Yu-Chun Jin, Peng Zhang, Hongliang Chen, Yi‐Peng Fu, Mingdi Zhang, Zhen Weng, Kangning Wu
Software Mentions: 5
Published: almost 5 years ago

10.1038/s41598-020-70581-2

Transcriptomic determinants of the response of ST-111 Pseudomonas aeruginosa AG1 to ciprofloxacin identified by a top-down systems biology approach
Cited by: 12
Author(s): José Arturo Molina-Mora, Diana Chinchilla-Montero, Maribel Chavarría-Azofeifa, Alejandro Ulloa-Morales, Rebeca Campos-Sánchez, Rodrigo Mora-Rodríguez, Leming Shi, Fernando García
Software Mentions: 5
Published: about 4 years ago

10.3390/ijms22179470

Mammalian and Invertebrate Models as Complementary Tools for Gaining Mechanistic Insight on Muscle Responses to Spaceflight
Cited by: 13
Author(s): Thomas J. Cahill, Henry Cope, Joseph J. Bass, Eliah Overbey, Rachel Gilbert, Willian A. da Silveira, Amber M. Paul, Tejaswini Mishra, Raúl Herranz, Sigrid Reinsch, Sylvain V. Costes, Gary Hardiman, Nathaniel J. Szewczyk, Candice Tahimic
Software Mentions: 5
Published: about 3 years ago

10.1038/s41598-019-39318-8

Identifying Windows of Susceptibility by Temporal Gene Analysis
Cited by: 9
Author(s): Kristin P. Bennett, Elisabeth M. Brown, Hannah De los Santos, Matthew Poegel, Thomas R. Kiehl, Evan W. Patton, Spencer Norris, Sally Temple, John S. Erickson, Deborah L. McGuinness, Nathan C. Boles
Software Mentions: 5
Published: over 5 years ago

10.3389/frma.2021.644614

PubMed-Scale Chemical Concept Embeddings Reconstruct Physical Protein Interaction Networks
Cited by: 0
Author(s): Blaž Škrlj, Enja Kokalj, Nada Lavrač
Software Mentions: 5
Published: over 3 years ago

10.3389/fnmol.2019.00272

DYRK1A Overexpression Alters Cognition and Neural-Related Proteomic Pathways in the Hippocampus That Are Rescued by Green Tea Extract and/or Environmental Enrichment
Cited by: 18
Author(s): Ilario De Toma, Mireia Ortega, Patrick Aloy, Eduard Sabidó, Mara Dierssen
Software Mentions: 5
Published: almost 5 years ago

10.1016/j.isci.2021.102361

NASA GeneLab RNA-seq consensus pipeline: Standardized processing of short-read RNA-seq data
Cited by: 17
Author(s): Eliah Overbey, Amanda Saravia-Butler, Zhe Zhang, Komal S. Rathi, Homer Fogle, Willian A. da Silveira, Richard Barker, Joseph J. Bass, Afshin Beheshti, Daniel C. Berrios, Elizabeth A. Blaber, Egle Cekanaviciute, Helio A. Costa, Laurence Davin, Kathleen M. Fisch, Samrawit Gebre, Matthew Geniza, Rachel Gilbert, Simon Gilroy, Gary Hardiman, Raúl Herranz, Yared H. Kidane, Colin Kruse, Michael Lee, Ted Liefeld, Norman Lewis, J. Tyson McDonald, Robert Meller, Tejaswini Mishra, Imara Y. Perera, Shayoni Ray, Sigrid Reinsch, Sara Brin Rosenthal, Michael Strong, Nathaniel J. Szewczyk, Candice Tahimic, Deanne Taylor, Joshua P. Vandenbrink, Alicia Villacampa, Silvio Weging, Chris Wolverton, Sarah E. Wyatt, Luis Zea, Sylvain V. Costes, Jonathan M. Galazka
Software Mentions: 4
Published: over 3 years ago

10.18632/aging.202811

Prognostic analysis of tumor mutation burden and immune infiltration in hepatocellular carcinoma based on TCGA data
Cited by: 6
Author(s): Shaoqing Liu, Qian-Jie Tang, Jianwen Huang, Meixiao Zhan, Wei Zhao, Xiangyu Yang, Li Yong, Lijuan Qiu, Fujun Zhang, Ligong Lu, Xueling He
Software Mentions: 4
Published: over 3 years ago

10.7717/peerj.6994

RITAN: rapid integration of term annotation and network resources
Cited by: 15
Author(s): Michael T. Zimmermann, Brian Kabat, Diane E. Grill, Richard B. Kennedy, Gregory A. Poland
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0180751

Increased dermal collagen bundle alignment in systemic sclerosis is associated with a cell migration signature and role of Arhgdib in directed fibroblast migration on aligned ECMs
Cited by: 14
Author(s): Lizhi Cao, Robert Lafyatis, Linda C. Burkly
Software Mentions: 4
Published: over 7 years ago

10.3390/genes12010072

In Silico Characterization of Toxin-Antitoxin Systems in Campylobacter Isolates Recovered from Food Sources and Sporadic Human Illness
Cited by: 1
Author(s): Bishoy Wadie, Mohamed A.O. Abdelfattah, Alshymaa Yousef, Shaimaa F. Mouftah, Mohamed Elhadidy, Tamer Z. Salem
Software Mentions: 4
Published: almost 4 years ago

10.1038/s41598-020-72625-z

Re-establishment of the epigenetic state and rescue of kinome deregulation in Ts65Dn mice upon treatment with green tea extract and environmental enrichment
Cited by: 13
Author(s): Ilario De Toma, Mireia Ortega, Silvina Catuara-Solarz, Cesar Sierra, Eduard Sabidó, Mara Dierssen
Software Mentions: 4
Published: about 4 years ago

10.1038/s41598-021-84647-2

Integrative network analysis reveals USP7 haploinsufficiency inhibits E-protein activity in pediatric T-lineage acute lymphoblastic leukemia (T-ALL)
Cited by: 8
Author(s): Timothy I. Shaw, Li Dong, Liqing Tian, Chenxi Qian, Yu Liu, Bensheng Ju, Anthony A. High, Kanisha Kavdia, Vishwajeeth Pagala, Bridget Shaner, Deqing Pei, John Easton, Laura J. Janke, Shaina N. Porter, Xiaotu Ma, Cheng Cheng, Shondra M. Pruett-Miller, John K. Choi, Jiyang Yu, Junmin Peng, Wei Gu, A. Thomas Look, James R. Downing, Jinghui Zhang
Software Mentions: 4
Published: over 3 years ago

10.3390/ijms22084026

Metabolic, Organoleptic and Transcriptomic Impact of Saccharomyces cerevisiae Genes Involved in the Biosynthesis of Linear and Substituted Esters
Cited by: 4
Author(s): Philippe Marullo, Marine Trujillo, Rémy Viannais, Lucas Hercman, Sabine Guillaumie, Benoît Colonna-Ceccaldi, Warren Albertin, Jean‐Christophe Barbe
Software Mentions: 4
Published: over 3 years ago

10.1038/srep19820

Semantic interrogation of a multi knowledge domain ontological model of tendinopathy identifies four strong candidate risk genes
Cited by: 14
Author(s): Colleen Saunders, Mahjoubeh Jalali Sefid Dashti, Junaid Gamieldien
Software Mentions: 3
Published: over 8 years ago

10.1038/s41598-019-52299-y

Analysis of Arabidopsis thaliana Redox Gene Network Indicates Evolutionary Expansion of Class III Peroxidase in Plants
Cited by: 15
Author(s): Raffael Azevedo de Carvalho Oliveira, Abraão Silveira de Andrade, Danilo Oliveira Imparato, Juliana Gabriela Silva de Lima, Ricardo Victor Machado de Almeida, Jorge Lima, Matheus Augusto de Bittencourt Pasquali, Rodrigo Juliani Siqueira Dalmolin
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41598-020-67801-0

Novel candidate drugs in anti-tumor necrosis factor refractory Crohn’s diseases: in silico study for drug repositioning
Cited by: 5
Author(s): Min Seob Kwak, Hun Hee Lee, Jae Myung, Hyun Phil Shin, Jung Won Jeon, Jin Young Yoon
Software Mentions: 3
Published: over 4 years ago

10.3389/fcimb.2018.00160

Group A Streptococcus M1T1 Intracellular Infection of Primary Tonsil Epithelial Cells Dampens Levels of Secreted IL-8 Through the Action of SpyCEP
Cited by: 20
Author(s): Amelia T. Soderholm, Timothy C. Barnett, Othmar Korn, Tania Rivera-Hernandez, Lisa M. Seymour, Benjamin L. Schulz, Victor Nizet, Christine A. Wells, Matthew J. Sweet, Mark J. Walker
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-020-74100-1

Early-pregnancy transcriptome signatures of preeclampsia: from peripheral blood to placenta
Cited by: 9
Author(s): Aishwarya P. Yadama, Enrico Maiorino, Vincent J. Carey, Thomas F. McElrath, Augusto A. Litonjua, Joseph Loscalzo, Scott T. Weiss, Hooman Mirzakhani
Software Mentions: 3
Published: almost 4 years ago

10.3389/fonc.2020.01210

Identification of Energy Metabolism Genes for the Prediction of Survival in Hepatocellular Carcinoma
Cited by: 29
Author(s): Qinjunjie Chen, Fengwei Li, Yuzhen Gao, Gaoran Xu, Leilei Liang, Jing Xu
Software Mentions: 3
Published: about 4 years ago

10.1016/j.jbc.2021.100968

PTEN regulates adipose progenitor cell growth, differentiation, and replicative aging
Cited by: 8
Author(s): Anna Kirstein, Stephanie Kehr, Michèle Nebe, Martha Hanschkow, Lisa A. G. Barth, Jana Lorenz, Melanie Penke, Jana Breitfeld, Diana Le Duc, Kathrin Landgraf, Antje Körner, Peter Kovacs, Peter F. Stadler, Wieland Kieß, Antje Garten
Software Mentions: 3
Published: about 3 years ago

10.1186/s12864-019-5673-6

Gene expression changes associated with the evolutionary loss of a metabolic trait: lack of lipogenesis in parasitoids
Cited by: 19
Author(s): Mark Lammers, Ken Kraaijeveld, Janine Mariën, Jacintha Ellers
Software Mentions: 3
Published: over 5 years ago

10.1186/s12885-019-5681-6

Probabilistic modeling of personalized drug combinations from integrated chemical screen and molecular data in sarcoma
Cited by: 11
Author(s): Noah Berlow, Rikhi Rikhi, Mathew Geltzeiler, Jinu Abraham, Matthew N. Svalina, Lara E. Davis, Erin Wise, Maria Mancini, Jonathan Noujaim, Atiya Mansoor, Michael J. Quist, Kevin Matlock, Martin Goros, Brian Hernandez, Yee Cheen Doung, Khin Thway, Tomohide Tsukahara, Jun Nishio, Elaine Huang, Susan D. Airhart, Carol J. Bult, Regina Gandour‐Edwards, Robert G. Maki, Robin L. Jones, Joel E. Michalek, Milan Milovancev, Souparno Ghosh, Ranadip Pal, Charles Keller
Software Mentions: 3
Published: over 5 years ago

10.1097/MD.0000000000026896

LEP as a potential biomarker in prognosis of breast cancer
Cited by: 5
Author(s): Tong Jin, Madhuri Saindane, Kyoung Sik Park, SeongHoon Kim, Sang-Eun Nam, Young-Tae Yoo, Jung‐Hyun Yang, IkJin Yun
Software Mentions: 2
Published: about 3 years ago

10.3389/fgene.2020.613162

Gene Expression Changes and Associated Pathways Involved in the Progression of Prostate Cancer Advanced Stages
Cited by: 12
Author(s): Elena A. Pudova, George S. Krasnov, Anastasiya A. Kobelyatskaya, М. В. Савватеева, Maria S. Fedorova, Vladislav Pavlov, K. M. Nyushko, А. Д. Каприн, B. Ya. Alekseev, Trofimov D.Yu. Trofimov, Г. Т. Сухих, Anastasiya V. Snezhkina, Anna V. Kudryavtseva
Software Mentions: 2
Published: over 3 years ago

10.3390/cells9030746

Elevated PDK1 Expression Drives PI3K/AKT/MTOR Signaling Promotes Radiation-Resistant and Dedifferentiated Phenotype of Hepatocellular Carcinoma
Cited by: 76
Author(s): Oluwaseun Adebayo Bamodu, Hang Chang, Jiann Ruey Ong, Wei Hwa Lee, Chi Tai Yeh, Jo Ting Tsai
Software Mentions: 2
Published: over 4 years ago

10.3389/fgene.2019.00180

Identification of Triple-Negative Breast Cancer Genes and a Novel High-Risk Breast Cancer Prediction Model Development Based on PPI Data and Support Vector Machines
Cited by: 12
Author(s): Ming Li, Yu Guo, Yuanming Feng, Ning Zhang
Software Mentions: 2
Published: over 5 years ago

10.1186/s12859-021-04313-2

The ‘un-shrunk’ partial correlation in Gaussian graphical models
Cited by: 0
Author(s): Victor Bernal, Rainer Bischoff, Péter Horvatovich, Victor Guryev, Marco Grzegorczyk
Software Mentions: 2
Published: about 3 years ago

10.1186/s12859-015-0455-x

Candidate prioritization for low-abundant differentially expressed proteins in 2D-DIGE datasets
Cited by: 1
Author(s): Umesh K. Nandal, Wytze J. Vlietstra, Carsten Byrman, Rienk E. Jeeninga, Jeffrey H. Ringrose, Antoine H. C. van Kampen, Dave Speijer, Perry D. Moerland
Software Mentions: 2
Published: over 9 years ago

10.1016/j.coisb.2019.04.002

Footprint-based functional analysis of multiomic data
Cited by: 32
Author(s): Aurélien Dugourd, Julio Sáez-Rodríguez
Software Mentions: 2
Published: over 5 years ago

10.3389/fonc.2021.615967

Identification of Proteins Deregulated by Platinum-Based Chemotherapy as Novel Biomarkers and Therapeutic Targets in Non-Small Cell Lung Cancer
Cited by: 4
Author(s): Sarah-Louise Ryan, Keyur A. Dave, Sam Beard, Martina Gyimesi, M. McTaggart, Katherine B. Sahin, Christopher J. Molloy, Neha S. Gandhi, Eric D. Boittier, Connor O’Leary, Esha Shah, Emma Bolderson, Anne‐Marie Baird, Derek J. Richard, Kenneth J. O’Byrne, Mark N. Adams
Software Mentions: 2
Published: over 3 years ago

10.3390/ijms22084290

Out-of-Field Hippocampus from Partial-Body Irradiated Mice Displays Changes in Multi-Omics Profile and Defects in Neurogenesis
Cited by: 3
Author(s): Simonetta Pazzaglia, Barbara Tanno, Francesca Antonelli, Paola Giardullo, Gabriele Babini, Prabal Subedi, Omid Azimzadeh, Zohaib Nisar Khan, Kateryna Oleksenko, Fabian Metzger, Christine von Toerne, Damien Traynor, Dinesh Medipally, Aidan D. Meade, Munira Kadhim, Fiona M. Lyng, Soile Tapio, Anna Saran, Mariateresa Mancuso
Software Mentions: 2
Published: over 3 years ago

10.1186/s12859-021-03987-y

ComHub: Community predictions of hubs in gene regulatory networks
Cited by: 9
Author(s): Julia Åkesson, Zelmina Lubovac-Pilav, Rasmus Magnusson, Mika Gustafsson
Software Mentions: 2
Published: over 3 years ago

10.3390/cells10081898

Deoxynivalenol and Zearalenone: Different Mycotoxins with Different Toxic Effects in the Sertoli Cells of Equus asinus
Cited by: 5
Author(s): Junlin Song, Guoliang Zhang
Software Mentions: 2
Published: about 3 years ago

10.1186/s12859-018-2573-8

CoExpresso: assess the quantitative behavior of protein complexes in human cells
Cited by: 7
Author(s): Morteza H. Chalabi, Vasileios Tsiamis, Lukas Käll, Fabio Vandin, Veit Schwämmle
Software Mentions: 2
Published: over 5 years ago

10.21451/1984-3143-AR2019-0001

Evaluation of the proteomic profiles of ejaculated spermatozoa from Saanen bucks (Capra hircus)
Cited by: 4
Author(s): Tatiana Maria Farias Pinto, Raulzito Fernandes Moreira, Maria Nágila Carneiro Matos, Vitória Virgínia Magalhães Soares, Mônica Valéria de Almeida Aguiar, Paulo de Tarso Teles Dourado de Aragão, João Garcia Alves, Frederico Bruno Mendes Batista Moreno, Ana Cristina de Oliveira Monteiro‐Moreira, Cíntia Renata Rocha Costa, José Luiz de Lima, Â. M. X. Eloy, Rodrigo Maranguape Silva da Cunha
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0153803

A Protein Domain and Family Based Approach to Rare Variant Association Analysis
Cited by: 5
Author(s): Tom G Richardson, Hashem A. Shihab, Manuel A. Rivas, Mark I. McCarthy, Colin Campbell, Nicholas J. Timpson, Tom R. Gaunt
Software Mentions: 2
Published: over 8 years ago

10.3389/frai.2021.674370

Similarities and Differences in Gene Expression Networks Between the Breast Cancer Cell Line Michigan Cancer Foundation-7 and Invasive Human Breast Cancer Tissues
Cited by: 6
Author(s): Vy Tran, Robert Kim, Mikhail Maertens, Thomas Hartung, Alexandra Maertens
Software Mentions: 2
Published: over 3 years ago

10.3390/ijms22147240

A Panel of rSNPs Demonstrating Allelic Asymmetry in Both ChIP-seq and RNA-seq Data and the Search for Their Phenotypic Outcomes through Analysis of DEGs
Cited by: 5
Author(s): Elena E. Korbolina, L. O. Bryzgalov, Diana Z. Ustrokhanova, Sergey Postovalov, Dmitry V. Poverin, Igor S. Damarov, T. I. Merkulova
Software Mentions: 2
Published: over 3 years ago

10.1111/acel.12964

CpG‐related SNPs in the MS4A region have a dose‐dependent effect on risk of late–onset Alzheimer disease
Cited by: 7
Author(s): Yiyi Ma, Gyungah Jun, Jaeyoon Chung, Xiaoling Zhang, Brian W. Kunkle, Adam C. Naj, Charles C. White, David A. Bennett, Philip L. De Jager, Richard Mayeux, Jonathan L. Haines, Margaret A. Pericak‐Vance, Gerard D. Schellenberg, Lindsay A. Farrer, Kathryn L. Lunetta
Software Mentions: 2
Published: over 5 years ago

10.3389/fcell.2021.696545

Nasal Septum Deviation as the Consequence of BMP-Controlled Changes to Cartilage Properties
Cited by: 3
Author(s): Pranidhi Baddam, Daniel W. Young, Garett Dunsmore, Chunpeng Nie, Farah Eaton, Shokrollah Elahi, Juan Jovel, Adetola B Adesida, Antoine Dufour, Daniel Graf
Software Mentions: 2
Published: over 3 years ago

10.3390/ijms21165687

Isoforsythiaside Attenuates Alzheimer’s Disease via Regulating Mitochondrial Function Through the PI3K/AKT Pathway
Cited by: 21
Author(s): Chunyue Wang, Jie Hao, Xin Liu, Chenliang Li, Xuyang Yuan, Robert J. Lee, Bin Tian, Di Wang
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pone.0214285

Effects of early social deprivation on epigenetic statuses and adaptive behavior of young children: A study based on a cohort of institutionalized infants and toddlers
Cited by: 19
Author(s): O. Yu. Naumova, S. Yu. Rychkov, Sergey A. Kornilov, Veronika V. Odintsova, Varvara О. Anikina, Maria Solodunova, I.A. Arintcina, Marina A. Zhukova, Irina V. Ovchinnikova, Olga Burenkova, О. В. Жукова, Rifkat J. Muhamedrahimov, Elena L. Grigorenko
Software Mentions: 1
Published: over 5 years ago

10.3390/cancers13143478

Differential but Concerted Expression of HSD17B2, HSD17B3, SHBG and SRD5A1 Testosterone Tetrad Modulate Therapy Response and Susceptibility to Disease Relapse in Patients with Prostate Cancer
Cited by: 5
Author(s): Oluwaseun Adebayo Bamodu, Kai-Yi Tzou, Chia-Da Lin, Su-Wei Hu, Yuan–Hung Wang, Wenling Wu, Kuan-Chou Chen, Chia-Chang Wu
Software Mentions: 1
Published: about 3 years ago

10.1038/s41420-021-00500-5

Long noncoding RNA LYPLAL1-AS1 regulates adipogenic differentiation of human mesenchymal stem cells by targeting desmoplakin and inhibiting the Wnt/β-catenin pathway
Cited by: 8
Author(s): Yanlei Yang, Junfen Fan, Haoying Xu, Linyuan Fan, Ling Deng, Jing Li, Di Li, Hongling Li, Fengchun Zhang, Robert Chunhua Zhao
Software Mentions: 1
Published: over 3 years ago

10.3390/cells10030509

Eosinophil Responses at the Airway Epithelial Barrier during the Early Phase of Influenza a Virus Infection in C57BL/6 Mice
Cited by: 13
Author(s): Meenakshi Tiwary, Robert J. Rooney, Swantje Liedmann, Kim S. LeMessurier, Amali E. Samarasinghe
Software Mentions: 1
Published: over 3 years ago

10.1155/2021/9163279

Microencapsulated Recombinant Human Epidermal Growth Factor Ameliorates Osteoarthritis in a Murine Model
Cited by: 0
Author(s): Shih Chao Lin, Xiang Zhang, Shiow Yi Chen, Chi Chien Lin, Yen Shuo Chiu
Software Mentions: 1
Published: about 3 years ago

10.3389/fphar.2021.639458

The Protection of Crocin Against Ulcerative Colitis and Colorectal Cancer via Suppression of NF-κB-Mediated Inflammation
Cited by: 10
Author(s): Shanshan Teng, Jie Hao, Hui Bi, Congcong Li, Yongfeng Zhang, Yaqin Zhang, Wei Han, Di Wang
Software Mentions: 1
Published: over 3 years ago

10.1109/OJEMB.2020.2967105

Histone Signatures Predict Therapeutic Efficacy in Breast Cancer
Cited by: 2
Author(s): Shamim Mollah, Shankar Subramaniam
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.ppat.1008485

System-wide biochemical analysis reveals ozonide antimalarials initially act by disrupting Plasmodium falciparum haemoglobin digestion
Cited by: 22
Author(s): Carlo Giannangelo, Ghizal Siddiqui, Amanda De Paoli, Bethany M. Anderson, Laura E. Edgington-Mitchell, Susan A. Charman, Darren J. Creek
Software Mentions: 1
Published: over 4 years ago

10.1080/0886022X.2019.1591997

Label-free quantitative proteomics identifies Smarca4 is involved in vascular calcification
Cited by: 17
Author(s): Chan Wang, Yun Tang, Yanmei Wang, Guisen Li, Li Wang, Yang Li
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-017-05726-x

The CINSARC signature as a prognostic marker for clinical outcome in multiple neoplasms
Cited by: 24
Author(s): Tom Lesluyes, Lucile Delespaul, Jean‐Michel Coindre, Frédéric Chibon
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-020-63569-5

Assigning a role for chemosensory signal transduction in Campylobacter jejuni biofilms using a combined omics approach
Cited by: 11
Author(s): Greg Tram, William P. Klare, Joel A. Cain, Basem Mourad, Stuart J. Cordwell, Christopher J. Day, Victoria Korolik
Software Mentions: 1
Published: over 4 years ago

10.1111/acel.13287

Peripheral inflammation preceeding ischemia impairs neuronal survival through mechanisms involving miR‐127 in aged animals
Cited by: 5
Author(s): Sanna Loppi, Paula Korhonen, Maria Bouvy-Liivrand, Simone Caligola, Tiia A. Turunen, Mikko P. Turunen, Ana Hernández de Sande, Natalia Kołosowska, Flavia Scoyni, Anna Rosell, Teresa García‐Berrocoso, Sighild Lemarchant, Hiramani Dhungana, Joan Montaner, Jari Koistinaho, Katja M. Kanninen, Minna U. Kaikkonen, Rosalba Giugno, Merja Heinäniemi, Tarja Malm
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-020-72002-w

Activity-based protein profiling of rice (Oryza sativa L.) bran serine hydrolases
Cited by: 3
Author(s): Achintya Kumar Dolui, Arun Kumar Vijayakumar, Ram Rajasekharan, Panneerselvam Vijayaraj
Software Mentions: 1
Published: about 4 years ago

10.18632/aging.203128

The dysregulated Pink1- Drosophila mitochondrial proteome is partially corrected with exercise
Cited by: 3
Author(s): Brad Ebanks, Thomas L Ingram, Gunjan Katyal, John R. Ingram, Nicoleta Moisoi, Lisa Chakrabarti
Software Mentions: 1
Published: over 3 years ago

10.3390/ijms221910897

GreeningDB: A Database of Host–Pathogen Protein–Protein Interactions and Annotation Features of the Bacteria Causing Huanglongbing HLB Disease
Cited by: 0
Author(s): Cristian D Loaiza, Naveen Duhan, Rakesh Kaundal
Software Mentions: 1
Published: almost 3 years ago

10.1038/s41598-021-85729-x

An integrated approach for identification of a panel of candidate genes arbitrated for invasion and metastasis in oral squamous cell carcinoma
Cited by: 3
Author(s): Samapika Routray, Ravindra Kumar, Keshava K. Datta, Vinuth N Puttamallesh, Aditi Chatterjee, Harsha Gowda, Neeta Mohanty, Rupesh Dash, Anshuman Dixit
Software Mentions: 1
Published: over 3 years ago

10.1038/s41398-021-01253-6

Neuroticism alters the transcriptome of the frontal cortex to contribute to the cognitive decline and onset of Alzheimer’s disease
Cited by: 7
Author(s): Céline H. De Jager, Charles C. White, David A. Bennett, Yuru Ma
Software Mentions: 1
Published: over 3 years ago

10.18632/aging.103199

Immune profiling reveals prognostic genes in high-grade serous ovarian cancer
Cited by: 9
Author(s): Yong Wu, Lingfang Xia, Ping Zhao, Yu Deng, Qinhao Guo, Zhu Jun, Xiaojun Chen, Xingzhu Ju, Xiaohua Wu
Software Mentions: 1
Published: over 4 years ago

10.1038/s41388-021-01711-x

Aurora-A kinase oncogenic signaling mediates TGF-β-induced triple-negative breast cancer plasticity and chemoresistance
Cited by: 30
Author(s): Mohammad Jalalirad, Tufia C. Haddad, Jeffrey L. Salisbury, Derek C. Radisky, Minzhi Zhang, Mark A. Schroeder, Ann C. Mladek Tuma, Eduard Leof, Jodi M. Carter, Amy C. Degnim, Judy C. Boughey, Jann N. Sarkaria, Jia Yu, Liewei Wang, Minetta C. Liu, Luca Zammataro, Lorenzo Malatino, Evanthia Galanis, James N. Ingle, Matthew P. Goetz, Antonino B. D’Assoro
Software Mentions: 1
Published: over 3 years ago

10.18632/aging.202776

The neuroprotection of deproteinized calf blood extractives injection against Alzheimer's disease via regulation of Nrf-2 signaling
Cited by: 6
Author(s): Yidi Qu, Wenqi Wang, Tianrui Chen, Yue Yang, Yizhi Zhang, Di Wang
Software Mentions: 1
Published: over 3 years ago

10.3390/ijms21010225

Proteomic Analyses Reveal New Insights on the Antimicrobial Mechanisms of Chitosan Biopolymers and Their Nanosized Particles against Escherichia coli
Cited by: 10
Author(s): Laidson Paes Gomes, Sandra I. Anjo, Bruno Manadas, Ana Varela Coelho, Vânia Margaret Flosi Paschoalin
Software Mentions: 1
Published: almost 5 years ago

10.17912/micropub.biology.000420

Annotating Putative D. discoideum Proteins Using I-TASSER.
Cited by: 1
Author(s): Jacquelyn McCullough, Petra Fey, Ryan J Rahman, Morgan E. Wallace, Seeta Morey, Kyle Sahlberg, Ethan McGonagle, Danielle Hess, Chance E Hatfield, Michaela-Romina Sarmiento, Jordi Velasquez, Richard H. Gomer
Software Mentions: 1
Published: almost 4 years ago

10.1155/2020/1587214

Autophagic Network Analysis of the Dual Effect of Sevoflurane on Neurons Associated with GABARAPL1 and 2
Cited by: 4
Author(s): Guolin Lu, Dongdong Rao, Min Zhou, Liangpu Xu, Longxin Zhang, Sujing Zhang, Yuping Wang
Software Mentions: 1
Published: over 4 years ago

10.1074/mcp.RA120.002029

Proteomics of Campylobacter jejuni Growth in Deoxycholate Reveals Cj0025c as a Cystine Transport Protein Required for Wild-type Human Infection Phenotypes
Cited by: 8
Author(s): Lok Man, Ashleigh L. Dale, William P. Klare, Joel A. Cain, Zeynep Sumer‐Bayraktar, Paula Niewold, Nestor Solis, Stuart J. Cordwell
Software Mentions: 1
Published: about 4 years ago

10.1002/advs.202000406

Sulfoxide‐Containing Polymer‐Coated Nanoparticles Demonstrate Minimal Protein Fouling and Improved Blood Circulation
Cited by: 37
Author(s): Ruirui Qiao, Changkui Fu, Yuhuan Li, Xiaole Qi, Dalong Ni, Aparna Nandakumar, Ghizal Siddiqui, Haiyan Wang, Zheng Zhang, Tingting Wu, Jian Zhong, Shi‐Yang Tang, Shuaijun Pan, Cheng Zhang, Michael R. Whittaker, Jonathan W. Engle, Darren J. Creek, Frank Caruso, Pu Chun Ke, Weibo Cai, Andrew K. Whittaker, Thomas P. Davis
Software Mentions: 1
Published: over 4 years ago

Projects: bioconductor: STRINGdb

Papers Mentioning STRINGdb 82