Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.26508/lsa.201900461

https://doi.org/10.26508/lsa.201900461

Cited by: 5
Author(s): Antonio Vitobello, Juliane Perner, Johanna Beil, Jiang Zhu, Alberto Del Río-Espínola, Laurent Morawiec, Magdalena Westphal, Valérie Dubost, Marc Altorfer, Ulrike Naumann, Arne Mueller, Karen Kapur, Mark Borowsky, Colin J. Henderson, Charles Wolf, Michael Schwarz, Jonathan G. Moggs, Rémi Terranova
Published: over 4 years ago

Software Mentions 12

bioconductor: bamsignals
Extract read count signals from bam files
Papers that mentioned: 5
bioconductor: chipenrich
Gene Set Enrichment For ChIP-seq Peak Data
Papers that mentioned: 2
bioconductor: ChIPpeakAnno
Batch annotation of the peaks identified from either ChIP-seq, ChIP-chip experiments or any experiments resulted in large number of chromosome ranges
Papers that mentioned: 145
bioconductor: DiffBind
Differential Binding Analysis of ChIP-Seq Peak Data
Papers that mentioned: 217
bioconductor: GenomicAlignments
Representation and manipulation of short genomic alignments
Papers that mentioned: 134
bioconductor: STRINGdb
STRINGdb - Protein-Protein Interaction Networks and Functional Enrichment Analysis
Papers that mentioned: 82
bioconductor: wiggleplotr
Make read coverage plots from BigWig files
Papers that mentioned: 4
cran: igraph
Network Analysis and Visualization
Papers that mentioned: 1,555
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
pypi: db
Databases for Humans
Papers that mentioned: 108
pypi: igraph
High performance graph data structures and algorithms
Papers that mentioned: 1,555
pypi: MACS2
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,203