Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: bamsignals
https://packages.ecosyste.ms/registries/bioconductor.org/packages/bamsignals
Extract read count signals from bam files
1 version
Latest release: 7 months ago
7 dependent packages
75,164 downloads total
Papers Mentioning bamsignals 5
10.26508/lsa.201900461
Drug-induced chromatin accessibility changes associate with sensitivity to liver tumor promotionCited by: 5
Author(s): Antonio Vitobello, Juliane Perner, Johanna Beil, Jiang Zhu, Alberto Del Río-Espínola, Laurent Morawiec, Magdalena Westphal, Valérie Dubost, Marc Altorfer, Ulrike Naumann, Arne Mueller, Karen Kapur, Mark Borowsky, Colin J. Henderson, Charles Wolf, Michael Schwarz, Jonathan G. Moggs, Rémi Terranova
Software Mentions: 12
Published: over 4 years ago
10.7554/eLife.10607
PHF13 is a molecular reader and transcriptional co-regulator of H3K4me2/3Cited by: 20
Author(s): Ho‐Ryun Chung, Chao Xu, Alisa Fuchs, Andreas Mund, Martin Lange, Hannah Staege, Tobias Schubert, Chuanbing Bian, Ilona Dunkel, Anton Eberharter, Catherine Regnard, Henrike Klinker, David Meierhofer, Luca Cozzuto, Andreas Winterpacht, Luciano Di Croce, Jinrong Min, Hans Will, Sarah Kinkley
Software Mentions: 4
Published: almost 8 years ago
10.1186/s12859-019-2708-6
Predicting enhancers in mammalian genomes using supervised hidden Markov modelsCited by: 11
Author(s): Tobias Zehnder, Philipp Benner, Martin Vingron
Software Mentions: 3
Published: about 5 years ago
10.15252/embj.201798783
Lmo2 expression defines tumor cell identity during T‐cell leukemogenesisCited by: 31
Author(s): Idoia García-Ramírez, Sanil Bhatia, Guillermo Rodríguez-Hernández, Inés González-Herrero, Carolin Walter, Sara González de Tena-Dávila, Salma Parvin, Oskar A. Haas, Wilhelm Woessmann, Martin Stanulla, Martin Schrappe, Martin Dugas, Yasodha Natkunam, Alberto Órfão, Verónica Domínguez, B. Pintado, Óscar Blanco, Diego Alonso-López, Javier De Las Rivas, Alberto Martín-Lorenzo, Rafael Jiménez, Francisco Javier García Criado, María Begoña García Cenador, Izidore S. Lossos, Carolina Vicente-Dueñas, Arndt Borkhardt, Julia Hauer, Isidro Sánchez-Garcı́a
Software Mentions: 3
Published: almost 6 years ago
10.1186/s13059-015-0708-z
Chromatin segmentation based on a probabilistic model for read counts explains a large portion of the epigenomeCited by: 86
Author(s): Alessandro Mammana, Ho‐Ryun Chung
Software Mentions: 2
Published: almost 9 years ago