Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12864-016-2737-8

https://doi.org/10.1186/s12864-016-2737-8

Cogena, a novel tool for co-expressed gene-set enrichment analysis, applied to drug repositioning and drug mode of action discovery

Cited by: 55
Author(s): Zhilong Jia, Ying Liu, Naiyang Guan, Xiaochen Bo, Zhi-Gang Luo, Michael R. Barnes
Published: over 8 years ago

Software Mentions 10

bioconductor: cogena
co-expressed gene-set enrichment analysis
Papers that mentioned: 6
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
bioconductor: STRINGdb
STRINGdb - Protein-Protein Interaction Networks and Functional Enrichment Analysis
Papers that mentioned: 82
cran: amap
Another Multidimensional Analysis Package
Papers that mentioned: 37
cran: biwt
Compute the Biweight Mean Vector and Covariance & Correlation Matrice
Papers that mentioned: 2
cran: clValid
Validation of Clustering Results
Papers that mentioned: 62
cran: doParallel
Foreach Parallel Adaptor for the 'parallel' Package
Papers that mentioned: 90
cran: WGCNA
Weighted Correlation Network Analysis
Papers that mentioned: 3,479
pypi: amap
Automated mouse atlas propagation
Papers that mentioned: 37
pypi: rma
Utilities to profile Redis RAM usage
Papers that mentioned: 67