Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: cogena
https://packages.ecosyste.ms/registries/bioconductor.org/packages/cogena
co-expressed gene-set enrichment analysis
1 version
Latest release: 10 months ago
16,343 downloads total
Papers Mentioning cogena 6
10.1186/s12864-016-2737-8
Cogena, a novel tool for co-expressed gene-set enrichment analysis, applied to drug repositioning and drug mode of action discoveryCited by: 55
Author(s): Zhilong Jia, Ying Liu, Naiyang Guan, Xiaochen Bo, Zhi-Gang Luo, Michael R. Barnes
Software Mentions: 10
Published: about 8 years ago
10.7717/peerj.6499
Transcriptional profiling in the livers of rats after hypobaric hypoxia exposureCited by: 5
Author(s): Zhenguo Xu, Zhilong Jia, Jianxin Shi, Zeyu Zhang, Xiaojian Gao, Qi Jia, Bohan Liu, Jixuan Liu, Chunlei Liu, Xiaojing Zhao, Kunlun He
Software Mentions: 5
Published: over 5 years ago
10.1186/s12911-020-01373-x
Computational analysis to repurpose drugs for COVID-19 based on transcriptional response of host cells to SARS-CoV-2Cited by: 18
Author(s): Fuhai Li, Andrew P. Michelson, Randi E. Foraker, Ming Zhan, Philip R. O. Payne
Software Mentions: 4
Published: over 3 years ago
10.1038/s41598-020-67801-0
Novel candidate drugs in anti-tumor necrosis factor refractory Crohn’s diseases: in silico study for drug repositioningCited by: 5
Author(s): Min Seob Kwak, Hun Hee Lee, Jae Myung, Hyun Phil Shin, Jung Won Jeon, Jin Young Yoon
Software Mentions: 3
Published: about 4 years ago
10.3389/fcell.2019.00204
Time-Course Transcriptome Analysis for Drug Repositioning in Fusobacterium nucleatum-Infected Human Gingival FibroblastsCited by: 10
Author(s): Wenyan Kang, Zhilong Jia, Di Tang, Xiaojing Zhao, Jianxin Shi, Qi Jia, Kunlun He, Qiang Feng
Software Mentions: 2
Published: almost 5 years ago
10.7717/peerj.11823
Transcriptional landscape in rat intestines under hypobaric hypoxiaCited by: 6
Author(s): Liuyang Tian, Zhilong Jia, Zhenguo Xu, Jianxin Shi, Xiaojing Zhao, Kunlun He
Software Mentions: 1
Published: almost 3 years ago