pypi: rma | Projects | Ecosyste.ms: Papers

10.1038/s41598-021-88209-4

Identification of transcriptional subtypes in lung adenocarcinoma and squamous cell carcinoma through integrative analysis of microarray and RNA sequencing data
Cited by: 6
Author(s): François Fauteux, Anuradha Surendra, Scott McComb, Youlian Pan, Jonathan D. Hill
Software Mentions: 15
Published: over 3 years ago

10.1186/s12864-016-2737-8

Cogena, a novel tool for co-expressed gene-set enrichment analysis, applied to drug repositioning and drug mode of action discovery
Cited by: 55
Author(s): Zhilong Jia, Ying Liu, Naiyang Guan, Xiaochen Bo, Zhi-Gang Luo, Michael R. Barnes
Software Mentions: 10
Published: over 8 years ago

10.1186/1471-2105-10-211

puma: a Bioconductor package for propagating uncertainty in microarray analysis
Cited by: 67
Author(s): Richard D. Pearson, Xuejun Liu, Guido Sanguinetti, Marta Milo, Neil D. Lawrence, Magnus Rattray
Software Mentions: 9
Published: over 15 years ago

10.3390/cells9030786

Systematic Identification of Housekeeping Genes Possibly Used as References in Caenorhabditis elegans by Large-Scale Data Integration
Cited by: 13
Author(s): Jingxin Tao, Youjin Hao, Xudong Li, Huachun Yin, Xiner Nie, Jie Zhang, Bo-Ying Xu, Chen Qiao, Bo Li
Software Mentions: 8
Published: over 4 years ago

10.1186/1471-2164-11-349

Comparison of normalization methods for Illumina BeadChip HumanHT-12 v3
Cited by: 70
Author(s): RM Schmid, Patrick Baum, Carina Ittrich, Katrin Fundel‐Clemens, Wolfgang Huber, Benedikt Brors, Roland Eils, Andreas Weith, Detlev Mennerich, Karsten Quast
Software Mentions: 7
Published: over 14 years ago

10.3390/genes12050665

Rewired Pathways and Disrupted Pathway Crosstalk in Schizophrenia Transcriptomes by Multiple Differential Coexpression Methods
Cited by: 6
Author(s): Hui Yu, Yan Guo, Jingchun Chen, Xiangning Chen, Peilin Jia, Zhongming Zhao
Software Mentions: 6
Published: over 3 years ago

10.7554/eLife.23361

A chloroplast retrograde signal, 3’-phosphoadenosine 5’-phosphate, acts as a secondary messenger in abscisic acid signaling in stomatal closure and germination
Cited by: 116
Author(s): Wannarat Pornsiriwong, Gonzalo M. Estavillo, Kai Xun Chan, Estee E-Ling Tee, Diep R Ganguly, Peter A. Crisp, Su Yin Phua, Chenchen Zhao, Jiaen Qiu, Jiyoung Park, Miing Tiem Yong, Nazia Nisar, Arun Kumar Yadav, Benjamin Schwessinger, John P. Rathjen, Christopher I. Cazzonelli, Philippa B. Wilson, Matthew Gilliham, Zhong‐Hua Chen, Barry J. Pogson
Software Mentions: 6
Published: over 7 years ago

10.1093/gigascience/giaa117

Correcting for experiment-specific variability in expression compendia can remove underlying signals
Cited by: 16
Author(s): Alexandra Lee, YoSon Park, Georgia Doing, Deborah A. Hogan, Casey S. Greene
Software Mentions: 6
Published: about 4 years ago

10.7554/eLife.11491

Localized JNK signaling regulates organ size during development
Cited by: 37
Author(s): Helen Rankin Willsey, Xiaoyan Zheng, José Carlos Pastor-Pareja, A. Jeremy Willsey, Philip A. Beachy, Tian Xu
Software Mentions: 6
Published: over 8 years ago

10.1186/s12920-015-0106-0

Integrated approaches to miRNAs target definition: time-series analysis in an osteosarcoma differentiative model
Cited by: 15
Author(s): Andrea Grilli, Marika Sciandra, Mario Terracciano, Piero Picci, Katia Scotlandi
Software Mentions: 6
Published: over 9 years ago

10.1186/s12874-018-0531-9

Meta-analysis of binary outcomes via generalized linear mixed models: a simulation study
Cited by: 31
Author(s): Ilyas Bakbergenuly, Elena Kulinskaya
Software Mentions: 5
Published: over 6 years ago

10.1186/s13059-020-02129-6

sn-spMF: matrix factorization informs tissue-specific genetic regulation of gene expression
Cited by: 16
Author(s): Yuan He, Surya B. Chhetri, Marios Arvanitis, Kaushik Srinivasan, François Aguet, Kristin Ardlie, Alvaro N. Barbeira, Rodrigo Bonazzola, Hae Kyung Im, Christopher D. Brown, Alexis Battle
Software Mentions: 5
Published: about 4 years ago

10.1016/S2589-7500(21)00115-1

Anosmia, ageusia, and other COVID-19-like symptoms in association with a positive SARS-CoV-2 test, across six national digital surveillance platforms: an observational study
Cited by: 48
Author(s): Carole H. Sudre, Ayya Keshet, Mark S. Graham, Amit D. Joshi, Smadar Shilo, Hagai Rossman, Benjamin Murray, Erika Molteni, Kerstin Kläser, Liane S Canas, Michela Antonelli, Long H. Nguyen, David A. Drew, Marc Modat, Joan Capdevila Pujol, Sajaysurya Ganesh, Jonathan Wolf, Tomer Meir, Andrew T. Chan, Claire J. Steves, Tim D. Spector, John S. Brownstein, Eran Segal, Sébastien Ourselin, Christina M Astley
Software Mentions: 5
Published: about 3 years ago

10.1371/journal.pcbi.0040006

Comprehensive Analysis of Affymetrix Exon Arrays Using BioConductor
Cited by: 45
Author(s): Michał Okoniewski, Crispin Miller
Software Mentions: 5
Published: over 16 years ago

10.1371/journal.pgen.1009140

Drosophila Caliban preserves intestinal homeostasis and lifespan through regulating mitochondrial dynamics and redox state in enterocytes
Cited by: 12
Author(s): Zhaoxia Dai, Dong Liu, Xiao Du, Ying Ge, Deborah A. Hursh, Xiaolin Bi
Software Mentions: 5
Published: about 4 years ago

10.1371/journal.pone.0208982

Cholinergic Receptor Nicotinic Alpha 5 (CHRNA5) RNAi is associated with cell cycle inhibition, apoptosis, DNA damage response and drug sensitivity in breast cancer
Cited by: 11
Author(s): Şahika Cıngır Köker, Ermira Jahja, Huma Shehwana, Ayşe Gökçe Keşküş, Özlen Konu
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0050253

Analysis of Gene Expression Data from Non-Small Cell Lung Carcinoma Cell Lines Reveals Distinct Sub-Classes from Those Identified at the Phenotype Level
Cited by: 2
Author(s): Andrew R. Dalby, Ibrahim Emam, Raimo Franke
Software Mentions: 5
Published: almost 12 years ago

10.3390/microarrays3040212

The Robustness of Pathway Analysis in Identifying Potential Drug Targets in Non-Small Cell Lung Carcinoma
Cited by: 1
Author(s): Andrew R. Dalby, Ian Bailey
Software Mentions: 5
Published: about 10 years ago

10.1155/2013/704589

Sensory Recovery Outcome after Digital Nerve Repair in Relation to Different Reconstructive Techniques: Meta-Analysis and Systematic Review
Cited by: 46
Author(s): Felix J. Paprottka, Petra Wolf, Yves Harder, Yasmin Kern, Philipp M. Paprottka, Hans‐Günther Machens, Jörn Andreas Lohmeyer
Software Mentions: 4
Published: over 11 years ago

10.1002/ece3.1107

An Illumina metabarcoding pipeline for fungi
Cited by: 103
Author(s): Miklós Bálint, Philipp-André Schmidt, Rahul Sharma, Marco Thines, Imke Schmitt
Software Mentions: 4
Published: over 10 years ago

10.3389/fimmu.2019.00197

Inflation vs. Exhaustion of Antiviral CD8+ T-Cell Populations in Persistent Infections: Two Sides of the Same Coin?
Cited by: 16
Author(s): Emanuele Marchi, Lian Ni Lee, Paul Klenerman
Software Mentions: 4
Published: over 5 years ago

10.3390/jcm10112259

Learning from Embryogenesis—A Comparative Expression Analysis in Melanoblast Differentiation and Tumorigenesis Reveals miRNAs Driving Melanoma Development
Cited by: 4
Author(s): Lisa Linck-Paulus, Lisa Lämmerhirt, Daniel Völler, Katharina Meyer, Julia C. Engelmann, Rainer Spang, Norbert Eichner, Gunter Meister, Silke Kuphal, Anja‐Katrin Bosserhoff
Software Mentions: 4
Published: over 3 years ago

10.1155/2013/167915

Correction of Spatial Bias in Oligonucleotide Array Data
Cited by: 2
Author(s): Philippe Serhal, Sébastien Lemieux
Software Mentions: 4
Published: over 11 years ago

10.1186/1471-2164-12-64

Pre-processing and differential expression analysis of Agilent microRNA arrays using the AgiMicroRna Bioconductor library
Cited by: 118
Author(s): Pedro López-Romero
Software Mentions: 4
Published: almost 14 years ago

10.1016/j.ccell.2019.08.003

Epithelial NOTCH Signaling Rewires the Tumor Microenvironment of Colorectal Cancer to Drive Poor-Prognosis Subtypes and Metastasis
Cited by: 230
Author(s): René Jackstadt, Sander R. van Hooff, Joshua D.G. Leach, Xabier Cortés-Lavaud, Jeroen Lohuis, Rachel A. Ridgway, Valérie M. Wouters, Jatin Roper, Timothy J. Kendall, Campbell S.D. Roxburgh, Paul G. Horgan, Colin Nixon, Craig Nourse, Matthias Gunzer, William Clark, Ann Hedley, Ömer H. Yılmaz, Mamunur Rashid, Peter J. Bailey, Andrew V. Biankin, Andrew D. Campbell, David J. Adams, Simon T. Barry, Colin W. Steele, Jan Paul Medema, Owen J. Sansom
Software Mentions: 4
Published: about 5 years ago

10.1002/sim.7588

A comparison of seven random‐effects models for meta‐analyses that estimate the summary odds ratio
Cited by: 129
Author(s): Dan Jackson, Martin Law, Theo Stijnen, Wolfgang Viechtbauer, Ian R. White
Software Mentions: 4
Published: almost 7 years ago

10.1038/s41598-018-32972-4

Cytoplasmic location of NR4A1 in aggressive lymphomas is associated with a favourable cancer specific survival
Cited by: 4
Author(s): Karoline Fechter, Julia Feichtinger, Katharina Prochazka, Julia Judith Unterluggauer, Katrin Pansy, Elisabeth Steinbauer, Martin Pichler, Johannes Haybaeck, Andreas Prokesch, Hildegard Greinix, Christine Beham–Schmid, Peter Neumeister, Gerhard G. Thallinger, Alexander Deutsch
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0032394

pcaGoPromoter - An R Package for Biological and Regulatory Interpretation of Principal Components in Genome-Wide Gene Expression Data
Cited by: 24
Author(s): Morten Hansen, Thomas Alexander Gerds, Ole Haagen Nielsen, Jakob Benedict Seidelin, Jesper T. Troelsen, Jørgen Olsen
Software Mentions: 4
Published: over 12 years ago

10.1002/jrsm.1244

Paule‐Mandel estimators for network meta‐analysis with random inconsistency effects
Cited by: 19
Author(s): Dan Jackson, Areti Angeliki Veroniki, Martin Law, Andrea C. Tricco, Rose Baker
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pgen.1003034

A Dominantly Acting Murine Allele of Mcm4 Causes Chromosomal Abnormalities and Promotes Tumorigenesis
Cited by: 35
Author(s): Bruce N. Bagley, Thomas M. Keane, Vilena I. Maklakova, Jonathon G. Marshall, Rachael Lester, Michelle M. Cancel, Alex R. Paulsen, Laura Bendzick, Raha A. Been, Scott C. Kogan, Robert T. Cormier, Christina Kendziorski, David J. Adams, Lara S. Collier
Software Mentions: 3
Published: about 12 years ago

10.1186/s12874-016-0184-5

Two new methods to fit models for network meta-analysis with random inconsistency effects
Cited by: 41
Author(s): Martin Law, Dan Jackson, Rebecca Turner, Kirsty Rhodes, Wolfgang Viechtbauer
Software Mentions: 3
Published: over 8 years ago

10.1186/1471-2105-11-104

Probe set filtering increases correlation between Affymetrix GeneChip and qRT-PCR expression measurements
Cited by: 32
Author(s): Jakub Mieczkowski, Magdalena E. Tyburczy, Michał Dąbrowski, Piotr Pokarowski
Software Mentions: 3
Published: over 14 years ago

10.1186/s12916-020-01652-4

Invasive non-typhoidal Salmonella infections in sub-Saharan Africa: a systematic review on antimicrobial resistance and treatment
Cited by: 54
Author(s): Bieke Tack, Jolien Vanaenrode, Jan Y Verbakel, Jaan Toelen, Jan Jacobs
Software Mentions: 3
Published: over 4 years ago

10.1186/s12859-016-1045-2

Network and biosignature analysis for the integration of transcriptomic and metabolomic data to characterize leaf senescence process in sunflower
Cited by: 26
Author(s): Sebastián Moschen, Janet Higgins, Julio A. Di Rienzo, Ruth Amelia Heinz, Norma Paniego, Paula Fernández
Software Mentions: 3
Published: over 8 years ago

10.1186/1471-2105-11-285

Preferred analysis methods for Affymetrix GeneChips. II. An expanded, balanced, wholly-defined spike-in dataset
Cited by: 34
Author(s): Qianqian Zhu, Jeffrey C. Miecznikowski, Marc S. Halfon
Software Mentions: 3
Published: over 14 years ago

10.1371/journal.pone.0075213

Otitis Media Impacts Hundreds of Mouse Middle and Inner Ear Genes
Cited by: 29
Author(s): Carol J. MacArthur, Fran Hausman, J. Beth Kempton, Dongseok Choi, Dennis R. Trune
Software Mentions: 3
Published: about 11 years ago

10.1371/journal.pone.0013984

Enrichment Map: A Network-Based Method for Gene-Set Enrichment Visualization and Interpretation
Cited by: 1,757
Author(s): Daniele Merico, Ruth Isserlin, Oliver Stueker, Andrew Emili, Gary D. Bader
Software Mentions: 3
Published: almost 14 years ago

10.18632/aging.101020

DNA methylation-based measures of biological age: meta-analysis predicting time to death
Cited by: 703
Author(s): Brian H. Chen, Riccardo E. Marioni, Elena Colicino, Marjolein J. Peters, Cavin Ward‐Caviness, Pei-Chien Tsai, Nicholas S. Roetker, Allan C. Just, Ellen W. Demerath, Weihua Guan, Jan Bressler, Myriam Fornage, Stephanie A. Studenski, Amy R. Vandiver, Ann Zenobia Moore, Toshiko Tanaka, Douglas P. Kiel, Liming Liang, Pantel Vokonas, Joel Schwartz, Kathryn L. Lunetta, Joanne M. Murabito, Stefania Bandinelli, Dena G. Hernandez, David Melzer, Michael A. Nalls, Luke C. Pilling, T. Ryan Price, Andrew B. Singleton, Christian Gieger, Rolf Holle, Anja Kretschmer, Florian Kronenberg, Sonja Kunze, Jakob Linseisen, Christine Meisinger, Wolfgang Rathmann, Mélanie Waldenberger, Peter M. Visscher, Sonia Shah, Naomi R. Wray, Allan F. McRae, Oscar H. Franco, Albert Hofman, André G. Uitterlinden, Devin Absher, Themistocles L. Assimes, Morgan E. Levine, Ake T. Lu, Philip S. Tsao, Lifang Hou, Jo Ann E. Manson, Cara L. Carty, Andrea Z. LaCroix, Alexander P. Reiner, Tim D. Spector, Andrew P. Feinberg, Daniel Levy, Andrea A. Baccarelli, Joyce B. J. van Meurs, Jordana T. Bell, Annette Peters, Ian J. Deary, James S. Pankow, Luigi Ferrucci, Steve Horvath
Software Mentions: 3
Published: about 8 years ago

10.3390/diagnostics10080584

Technique of Gene Expression Profiles Extraction Based on the Complex Use of Clustering and Classification Methods
Cited by: 24
Author(s): Sergii Babichev, Jiřı́ Škvor
Software Mentions: 3
Published: about 4 years ago

10.1016/j.dib.2020.105904

Data of a meta-analysis on pharmacological treatment strategies for lowering prolactin in people with a psychotic disorder and hyperprolactinaemia
Cited by: 4
Author(s): Javier Labad, Itziar Montalvo, Alexandre González-Rodríguez, Clemente García-Rizo, Benedicto Crespo‐Facorro, José Antonio Monreal, Diego Palao
Software Mentions: 3
Published: over 4 years ago

10.1002/1878-0261.12788

Adipose tissue from metabolic syndrome mice induces an aberrant miRNA signature highly relevant in prostate cancer development
Cited by: 5
Author(s): Cintia Massillo, Rocío Belén Duca, Ezequiel Lacunza, Guillermo Nicolás Dalton, Paula Lucía Farré, Nicolás Taha, Flavia Piccioni, Georgina Daniela Scalise, Kevin Gardner, Adriana De Siervi
Software Mentions: 3
Published: about 4 years ago

10.1093/bioinformatics/bts656

DvD: An R/Cytoscape pipeline for drug repurposing using public repositories of gene expression data
Cited by: 62
Author(s): Clare Pacini, Francesco Iorio, Emanuel Gonçalvès, Murat Iskar, Thomas Klabunde, Peer Bork, Julio Sáez-Rodríguez
Software Mentions: 3
Published: about 12 years ago

10.1186/1471-2202-8-59

Transcriptional control in embryonic Drosophila midline guidance assessed through a whole genome approach
Cited by: 10
Author(s): Tiago R. Magalhães, Jessica Palmer, Pavel Tomančák, Katherine S. Pollard
Software Mentions: 3
Published: over 17 years ago

10.3389/fmicb.2018.01955

Active HHV-6 Infection of Cerebellar Purkinje Cells in Mood Disorders
Cited by: 41
Author(s): Bhupesh K. Prusty, Nitish Gulve, Sheila Govind, G. R. F. Krueger, Julia Feichtinger, Lee Larcombe, Richard Aspinall, Dharam V. Ablashi, Carla Toro
Software Mentions: 2
Published: about 6 years ago

10.1111/acel.13148

Comparison of inbred mouse strains shows diverse phenotypic outcomes of intervertebral disc aging
Cited by: 30
Author(s): Emanuel J. Novais, V.H. Tran, Jingya Miao, Katie Slaver, Andrew Sinensky, Nathaniel A. Dyment, Sankar Addya, Flóra Szeri, Koen van de Wetering, Irving M. Shapiro, Makarand V. Risbud
Software Mentions: 2
Published: over 4 years ago

10.1186/1471-2105-10-214

Construction and use of gene expression covariation matrix
Cited by: 3
Author(s): Jérôme Hennetin, Petri Pehkonen, Michel Bellis
Software Mentions: 2
Published: over 15 years ago

10.1186/1471-2407-9-93

QPRT: a potential marker for follicular thyroid carcinoma including minimal invasive variant; a gene expression, RNA and immunohistochemical study
Cited by: 27
Author(s): Nora Hinsch, Matthias Frank, Claudia Döring, Christian Vorländer, Martin‐Leo Hansmann
Software Mentions: 2
Published: over 15 years ago

10.1186/1471-2164-7-215

Inferring direct regulatory targets from expression and genome location analyses: a comparison of transcription factor deletion and overexpression
Cited by: 20
Author(s): Lin Tang, Xiao Liu, Neil D. Clarke
Software Mentions: 2
Published: about 18 years ago

10.1186/1471-2164-9-630

Meta-analysis of expression signatures of muscle atrophy: gene interaction networks in early and late stages
Cited by: 57
Author(s): Enrica Calura, Stefano Cagnin, Anna Raffaello, Paolo Laveder, Gerolamo Lanfranchi, Chiara Romualdi
Software Mentions: 2
Published: almost 16 years ago

10.1371/journal.pgen.1003494

Distinct Translational Control in CD4+ T Cell Subsets
Cited by: 65
Author(s): Eva Bjur, Ola Larsson, Ekaterina A. Yurchenko, Leilei Zheng, Valentina Gandin, Ivan Topisirović, Shuijun Li, Carston R. Wagner, Nahum Sonenberg, Ciriaco A. Piccirillo
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0005008

Transcriptional Network of p63 in Human Keratinocytes
Cited by: 42
Author(s): Silvia Pozzi, Federico Zambelli, Daniele Merico, Giulio Pavesi, Amélie Robert, Peggy Maltère, Xavier Gidrol, Roberto Mantovani, M. Alessandra Viganò
Software Mentions: 2
Published: over 15 years ago

10.1371/journal.pone.0042596

MMP-13 Regulates Growth of Wound Granulation Tissue and Modulates Gene Expression Signatures Involved in Inflammation, Proteolysis, and Cell Viability
Cited by: 83
Author(s): Mervi Toriseva, Matti Laato, Olli Carpén, Suvi T. Ruohonen, Eriika Savontaus, Masaki Inada, Stephen M. Krane, Veli‐Matti Kähäri
Software Mentions: 2
Published: about 12 years ago

10.1371/journal.pone.0016912

Pooled Genome-Wide Analysis to Identify Novel Risk Loci for Pediatric Allergic Asthma
Cited by: 18
Author(s): Giampaolo Ricci, Annalisa Astolfi, Daniel Remondini, Francesca Cipriani, Serena Formica, Arianna Dondi, Andrea Pession
Software Mentions: 2
Published: over 13 years ago

10.3389/fimmu.2017.00489

Heterogeneity of Phenotype and Function Reflects the Multistage Development of T Follicular Helper Cells
Cited by: 18
Author(s): Marta Trüb, Tom A. Barr, Vicky L. Morrison, Sheila Brown, Stefano Caserta, Jordan Rixon, Alasdair Ivens, David Gray
Software Mentions: 2
Published: over 7 years ago

10.3389/fpsyg.2020.563876

Rapid Review and Meta-Meta-Analysis of Self-Guided Interventions to Address Anxiety, Depression, and Stress During COVID-19 Social Distancing
Cited by: 88
Author(s): Ronald Fischer, Tiago Bortolini, Johannes Alfons Karl, Marcelo Zilberberg, Kealagh Robinson, André Luiz Alves Rabelo, Lucas Gemal, Daniel Wegerhoff, Thị Bảo Trâm Nguyễn, Briar Irving, Megan Chrystal, Paulo Mattos
Software Mentions: 2
Published: about 4 years ago

10.1128/mBio.00924-17

An Alternative STAT Signaling Pathway Acts in Viral Immunity in <i>Caenorhabditis elegans</i>
Cited by: 37
Author(s): M. Tanguy, Louise Véron, Przemyslaw Stempor, Julie Ahringer, Peter Sarkies, Eric A. Miska
Software Mentions: 2
Published: almost 7 years ago

10.3390/ijms20194740

The CXCR4–CXCL12-Axis Is of Prognostic Relevance in DLBCL and Its Antagonists Exert Pro-Apoptotic Effects In Vitro
Cited by: 13
Author(s): Katrin Pansy, Julia Feichtinger, Barbara Ehall, Barbara Uhl, Miriam Sedej, David Roula, Beata Pursche, Axel Wolf, Manuel Zoidl, Elisabeth Steinbauer, Verena Gruber, Hildegard Greinix, Katharina Prochazka, Gerhard G. Thallinger, Ákos Heinemann, Christine Beham–Schmid, Peter Neumeister, Tanja Wrodnigg, Karoline Fechter, Alexander Deutsch
Software Mentions: 2
Published: about 5 years ago

10.1177/0361684317743019

Sexualizing Media Use and Self-Objectification
Cited by: 100
Author(s): Kathrin Karsay, Johannes Knoll, Jörg Matthes
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0022274

An Integrated Bioinformatics Approach Identifies Elevated Cyclin E2 Expression and E2F Activity as Distinct Features of Tamoxifen Resistant Breast Tumors
Cited by: 32
Author(s): Lei Huang, Shuangping Zhao, Jonna Frasor, Yang Dai
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0011065

Bifidobacterium bifidum Actively Changes the Gene Expression Profile Induced by Lactobacillus acidophilus in Murine Dendritic Cells
Cited by: 33
Author(s): Gudrun Weiss, Simon Rasmussen, Lisbeth Nielsen Fink, Hanne Østergaard Jarmer, Birgit Margrethe Nøhr Nielsen, Hanne Frøkiær
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pgen.1001393

Comparative Analysis of Proteome and Transcriptome Variation in Mouse
Cited by: 521
Author(s): Anatole Ghazalpour, Brian J. Bennett, Vladislav Petyuk, Luz D. Orozco, Raffi Hagopian, Imran N. Mungrue, Charles R. Farber, Janet S. Sinsheimer, Hyun Min Kang, Nicholas A. Furlotte, Christopher C. Park, Ping Wen, Heather M. Brewer, Karl K. Weitz, David G. Camp, Calvin Pan, Roumyana Yordanova, Isaac M. Neuhaus, Charles Tilford, Nathan O. Siemers, Peter S. Gargalovic, Eleazar Eskin, Todd G. Kirchgessner, Desmond J. Smith, Richard Smith, Aldons J. Lusis
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pcbi.0040022

Microarray Based Diagnosis Profits from Better Documentation of Gene Expression Signatures
Cited by: 28
Author(s): Dennis Kostka, Rainer Spang
Software Mentions: 1
Published: over 16 years ago

10.18632/oncotarget.9550

Deficiency of myeloid-related proteins 8 and 14 (Mrp8/Mrp14) does not block inflammaging but prevents steatosis
Cited by: 2
Author(s): William R. Swindell, Xianying Xing, Yi Fritz, Doina Diaconu, Daniel I. Simon, Nicole L. Ward, Jóhann E. Guðjónsson
Software Mentions: 1
Published: over 8 years ago

10.15252/msb.20135004

Genetic regulation of mouse liver metabolite levels
Cited by: 45
Author(s): Anatole Ghazalpour, Brian J. Bennett, Diana M. Shih, Nam Che, Luz D. Orozco, Calvin Pan, Raffi Hagopian, Aiqing He, Paul S. Kayne, Wei-Zhong Yang, Todd G. Kirchgessner, Aldons J. Lusis
Software Mentions: 1
Published: over 10 years ago

10.1186/1755-8794-7-S3-S2

Tumor antigens as proteogenomic biomarkers in invasive ductal carcinomas
Cited by: 12
Author(s): Lars Rønn Olsen, Benito Campos, Ole Winther, Dennis Sgroi, Barry L. Karger, Vladimir Brusic
Software Mentions: 1
Published: almost 10 years ago

10.1186/gb-2008-9-8-r125

Genomic analysis of the relationship between gene expression variation and DNA polymorphism in Drosophila simulans
Cited by: 19
Author(s): Mara Lawniczak, Alisha K. Holloway, David J. Begun, Corbin D. Jones
Software Mentions: 1
Published: almost 17 years ago

10.3389/fmed.2021.657918

Bioinformatics Analysis Reveals Crosstalk Among Platelets, Immune Cells, and the Glomerulus That May Play an Important Role in the Development of Diabetic Nephropathy
Cited by: 4
Author(s): Xinyue Yao, Hong Shen, Fukai Cao, Haiqi He, Li Bo-Yu, Haojun Zhang, Xinduo Zhang, Zhiguo Li
Software Mentions: 1
Published: over 3 years ago

Projects: pypi: rma

Papers Mentioning rma 67