Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1038/s41598-021-88209-4

https://doi.org/10.1038/s41598-021-88209-4

Identification of transcriptional subtypes in lung adenocarcinoma and squamous cell carcinoma through integrative analysis of microarray and RNA sequencing data

Cited by: 6
Author(s): François Fauteux, Anuradha Surendra, Scott McComb, Youlian Pan, Jonathan D. Hill
Published: over 3 years ago

Software Mentions 15

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
bioconductor: preprocessCore
A collection of pre-processing functions
Papers that mentioned: 146
bioconductor: sva
Surrogate Variable Analysis
Papers that mentioned: 511
bioconductor: VariantAnnotation
Annotation of Genetic Variants
Papers that mentioned: 47
cran: DescTools
Tools for Descriptive Statistics
Papers that mentioned: 152
cran: NbClust
Determining the Best Number of Clusters in a Data Set
Papers that mentioned: 181
cran: NMF
Algorithms and Framework for Nonnegative Matrix Factorization (NMF)
Papers that mentioned: 108
cran: Rcpp
Seamless R and C++ Integration
Papers that mentioned: 152
cran: Rdimtools
Dimension Reduction and Estimation Methods
Papers that mentioned: 1
cran: RWeka
R/Weka Interface
Papers that mentioned: 50
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
pypi: rma
Utilities to profile Redis RAM usage
Papers that mentioned: 67
pypi: stats
Calculator-style statistical functions
Papers that mentioned: 3,105