Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-020-02129-6

https://doi.org/10.1186/s13059-020-02129-6

sn-spMF: matrix factorization informs tissue-specific genetic regulation of gene expression

Cited by: 16
Author(s): Yuan He, Surya B. Chhetri, Marios Arvanitis, Kaushik Srinivasan, François Aguet, Kristin Ardlie, Alvaro N. Barbeira, Rodrigo Bonazzola, Hae Kyung Im, Christopher D. Brown, Alexis Battle
Published: about 4 years ago

Software Mentions 5

cran: JASPAR
R modules for JASPAR databases: a collection of transcription factor DNA-binding preferences, modeled as matrices
Papers that mentioned: 1,283
cran: softImpute
Matrix Completion via Iterative Soft-Thresholded SVD
Papers that mentioned: 12
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
pypi: MACS2
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,203
pypi: rma
Utilities to profile Redis RAM usage
Papers that mentioned: 67