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Papers: 10.1093/gigascience/giaa117

https://doi.org/10.1093/gigascience/giaa117

Correcting for experiment-specific variability in expression compendia can remove underlying signals

Cited by: 16
Author(s): Alexandra Lee, YoSon Park, Georgia Doing, Deborah A. Hogan, Casey S. Greene
Published: over 4 years ago

Software Mentions 6

bioconductor: ArrayExpress
Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet
Papers that mentioned: 1,962
Very Likely Science (83)
bioconductor: clusterProfiler
A universal enrichment tool for interpreting omics data
Papers that mentioned: 2,223
Very Likely Science (75)
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
Very Likely Science (78)
cran: COMBAT
A Combined Association Test for Genes using Summary Statistics
Papers that mentioned: 157
Very Likely Science (85)
pypi: ponyo
Install functions to simulate gene expression compendia
Papers that mentioned: 1
Very Likely Science (100)
pypi: rma
Utilities to profile Redis RAM usage
Papers that mentioned: 67
Likely Science (40)