Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1093/gigascience/giaa117

https://doi.org/10.1093/gigascience/giaa117

Correcting for experiment-specific variability in expression compendia can remove underlying signals

Cited by: 16
Author(s): Alexandra Lee, YoSon Park, Georgia Doing, Deborah A. Hogan, Casey S. Greene
Published: about 4 years ago

Software Mentions 6

bioconductor: ArrayExpress
Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet
Papers that mentioned: 1,962
bioconductor: clusterProfiler
A universal enrichment tool for interpreting omics data
Papers that mentioned: 2,223
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
cran: COMBAT
A Combined Association Test for Genes using Summary Statistics
Papers that mentioned: 157
pypi: ponyo
Install functions to simulate gene expression compendia
Papers that mentioned: 1
pypi: rma
Utilities to profile Redis RAM usage
Papers that mentioned: 67