Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: biclust

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/biclust

BiCluster Algorithms
15 versions
Latest release: over 1 year ago
12 dependent packages
3,348 downloads last month

Papers Mentioning biclust 19

iDEP: an integrated web application for differential expression and pathway analysis of RNA-Seq data
Cited by: 650
Author(s): Xijin Ge, Eun Wo Son, Runan Yao
Software Mentions: 14
Published: about 6 years ago

10.1186/s12859-017-1487-1

A systematic comparative evaluation of biclustering techniques
Cited by: 94
Author(s): Victor Alexandre Padilha, Ricardo J. G. B. Campello
Software Mentions: 10
Published: almost 8 years ago

10.1093/gigascience/giz064

TuBA: Tunable biclustering algorithm reveals clinically relevant tumor transcriptional profiles in breast cancer
Cited by: 6
Author(s): Amartya Singh, Gyan Bhanot, Hossein Khiabanian
Software Mentions: 10
Published: over 5 years ago

10.1093/bioinformatics/bts438

iBBiG: iterative binary bi-clustering of gene sets
Cited by: 44
Author(s): Daniel Gusenleitner, Eleanor Howe, Stefan Bentink, John Quackenbush, Aedín C. Culhane
Software Mentions: 8
Published: over 12 years ago

10.1186/1756-0381-5-8

A comparison and evaluation of five biclustering algorithms by quantifying goodness of biclusters for gene expression data
Cited by: 24
Author(s): Li Li, Yang Guo, Wenwu Wu, Yinggang Shi, Jian Cheng, Shiheng Tao
Software Mentions: 7
Published: over 12 years ago

10.1186/s13015-014-0027-z

BicPAM: Pattern-based biclustering for biomedical data analysis
Cited by: 57
Author(s): Rui Henriques, Sara C. Madeira
Software Mentions: 5
Published: about 10 years ago

10.1186/s12859-019-3289-0

Identifying gene-specific subgroups: an alternative to biclustering
Cited by: 3
Author(s): Vincent Branders, Pierre Schaus, Pierre Dupont
Software Mentions: 5
Published: about 5 years ago

10.1186/1755-8794-3-21

SEURAT: Visual analytics for the integrated analysis of microarray data
Cited by: 63
Author(s): Alexander Gribov, Martin Sill, Sonja C. Lück, Frank G. Rücker, Konstanze Döhner, Lars Bullinger, Axel Benner, Antony Unwin
Software Mentions: 5
Published: over 14 years ago

10.1002/1878-0261.12849

Molecular genomic features associated with<i>in vitro</i>response of the NCI‐60 cancer cell line panel to natural products
Cited by: 10
Author(s): Julia Krushkal, Simarjeet Negi, Laura M. Yee, Jason R. Evans, Tanja Grkovic, Alida Palmisano, Jianwen Fang, Hari Sankaran, Lisa M. McShane, Yingdong Zhao, Barry R. O’Keefe
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pone.0050986

RNA-Seq vs Dual- and Single-Channel Microarray Data: Sensitivity Analysis for Differential Expression and Clustering
Cited by: 73
Author(s): Alina Sîrbu, Gráinne Kerr, Martin Crane, Heather J. Ruskin
Software Mentions: 4
Published: about 12 years ago

10.1038/s41598-017-04070-4

A GPU-accelerated algorithm for biclustering analysis and detection of condition-dependent coexpression network modules
Cited by: 21
Author(s): Anindya Bhattacharya, Yan Cui
Software Mentions: 4
Published: over 7 years ago

10.3762/bjnano.6.252

Application of biclustering of gene expression data and gene set enrichment analysis methods to identify potentially disease causing nanomaterials
Cited by: 49
Author(s): Andrew Williams, Sabina Halappanavar
Software Mentions: 3
Published: about 9 years ago

10.1186/1752-0509-8-S2-S4

Integrative omics analysis. A study based on Plasmodium falciparum mRNA and protein data
Cited by: 12
Author(s): Oana Tomescu, Diethard Mattanovich, Gerhard Thallinger
Software Mentions: 3
Published: almost 11 years ago

10.1371/journal.pone.0207799

Subgrouping breast cancer patients based on immune evasion mechanisms unravels a high involvement of transforming growth factor-beta and decoy receptor 3
Cited by: 19
Author(s): Mayassa J. Bou‐Dargham, Yuhang Liu, Qing‐Xiang Amy Sang, Jinfeng Zhang
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pgen.1007560

Combinations of DIPs and Dprs control organization of olfactory receptor neuron terminals in Drosophila
Cited by: 44
Author(s): Scott Barish, Sarah Nuss, Ilya Strunilin, Suyang Bao, Sayan Mukherjee, Corbin D. Jones, Pelin Volkan
Software Mentions: 1
Published: over 6 years ago

10.1016/j.dib.2017.10.060

Application of bi-clustering of gene expression data and gene set enrichment analysis methods to identify potentially disease causing nanomaterials
Cited by: 4
Author(s): Andrew Williams, Sabina Halappanavar
Software Mentions: 1
Published: about 7 years ago

10.1186/s12864-016-3134-z

Distinct gene expression program dynamics during erythropoiesis from human induced pluripotent stem cells compared with adult and cord blood progenitors
Cited by: 19
Author(s): Alison T. Merryweather‐Clarke, Alex J. Tipping, Abigail Lamikanra, Rui Fa, Basel Abu‐Jamous, Hoi Pat Tsang, Lee Carpenter, Kathryn Robson, Asoke K. Nandi, David J. Roberts
Software Mentions: 1
Published: about 8 years ago

10.1186/1756-0500-6-468

Inferring protein–protein interaction complexes from immunoprecipitation data
Cited by: 5
Author(s): Joachim Kutzera, Huub C. J. Hoefsloot, Anna Malovannaya, August B. Smit, Iven Van Mechelen, Age K. Smilde
Software Mentions: 1
Published: about 11 years ago

10.1038/s41598-021-91752-9

Inferring transcriptomic cell states and transitions only from time series transcriptome data
Cited by: 5
Author(s): Kyuri Jo, Inyoung Sung, Jun Young Lee, Hyuksoon Jang, Sun Kim
Software Mentions: 1
Published: over 3 years ago