Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12864-021-07659-2

https://doi.org/10.1186/s12864-021-07659-2

Inferring and analyzing gene regulatory networks from multi-factorial expression data: a complete and interactive suite

Cited by: 15
Author(s): Océane Cassan, Sophie Lèbre, Antoine Martin
Published: over 3 years ago

Software Mentions 8

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: GENIE3
GEne Network Inference with Ensemble of trees
Papers that mentioned: 172
bioconductor: TCC
TCC: Differential expression analysis for tag count data with robust normalization strategies
Papers that mentioned: 67
cran: golem
A Framework for Robust Shiny Applications
Papers that mentioned: 2
cran: rfPermute
Estimate Permutation p-Values for Random Forest Importance Metrics
Papers that mentioned: 42
cran: WGCNA
Weighted Correlation Network Analysis
Papers that mentioned: 3,479
pypi: Expression
Practical functional programming for Python 3.9+
Papers that mentioned: 200
pypi: golem
Ontology language and toolkit for semantic processing of scientific data
Papers that mentioned: 2