Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: TCC
https://packages.ecosyste.ms/registries/bioconductor.org/packages/TCC
TCC: Differential expression analysis for tag count data with robust normalization strategies
1 version
Latest release: about 1 year ago
1 dependent package
47,884 downloads total
Papers Mentioning TCC 67
10.1186/s13104-019-4179-2
TCC-GUI: a Shiny-based application for differential expression analysis of RNA-Seq count dataCited by: 75
Author(s): Wei Su, Jianqiang Sun, Kentaro Shimizu, Koji Kadota
Software Mentions: 20
Published: over 5 years ago
10.1186/s12859-015-0794-7
Evaluation of methods for differential expression analysis on multi-group RNA-seq count dataCited by: 47
Author(s): Min Tang, Jianqiang Sun, Kentaro Shimizu, Koji Kadota
Software Mentions: 13
Published: about 9 years ago
10.1186/s12859-017-1498-y
Evaluation of logistic regression models and effect of covariates for case–control study in RNA-Seq analysisCited by: 15
Author(s): Seung Hoan Choi, Adam Labadorf, Richard H. Myers, Kathryn L. Lunetta, Josée Dupuis, Anita L. DeStefano
Software Mentions: 10
Published: almost 8 years ago
10.1186/s12575-018-0067-8
Silhouette Scores for Arbitrary Defined Groups in Gene Expression Data and Insights into Differential Expression ResultsCited by: 23
Author(s): Shitao Zhao, Jianqiang Sun, Kentaro Shimizu, Koji Kadota
Software Mentions: 10
Published: over 6 years ago
10.1186/1471-2105-14-219
TCC: an R package for comparing tag count data with robust normalization strategiesCited by: 394
Author(s): Jianqiang Sun, Tomoaki Nishiyama, Kentaro Shimizu, Koji Kadota
Software Mentions: 8
Published: over 11 years ago
10.1186/s12864-021-07659-2
Inferring and analyzing gene regulatory networks from multi-factorial expression data: a complete and interactive suiteCited by: 15
Author(s): Océane Cassan, Sophie Lèbre, Antoine Martin
Software Mentions: 8
Published: over 3 years ago
10.1038/sdata.2019.34
Global transcriptome analysis of pig induced pluripotent stem cells derived from six and four reprogramming factorsCited by: 11
Author(s): T. Fukuda, Keiko Doi, Kenichiro Donai, Kazumasa Takahashi, Hisato Kobayashi, Takashi Hirano, Katsuhiko Nishimori, Hiroshi Yasue
Software Mentions: 8
Published: over 5 years ago
10.1186/s12920-020-00808-8
Biomarker discovery in attention deficit hyperactivity disorder: RNA sequencing of whole blood in discordant twin and case-controlled cohortsCited by: 11
Author(s): Timothy A. McCaffrey, Georges St. Laurent, Dmitry Shtokalo, Денис Антонец, Yuri Vyatkin, Dan Jones, Eleanor Battison, Joel T. Nigg
Software Mentions: 7
Published: about 4 years ago
10.3390/medicina55060269
A Robust Approach for Identification of Cancer Biomarkers and Candidate DrugsCited by: 10
Author(s): Shahjaman, Rezanur Rahman, S. M. Shahinul Islam, Md. Nurul Haque Mollah
Software Mentions: 7
Published: over 5 years ago
10.1186/s12864-017-3662-1
Evolutionary acquisition of promoter-associated non-coding RNA (pancRNA) repertoires diversifies species-dependent gene activation mechanisms in mammalsCited by: 18
Author(s): Masahiro Uesaka, Kiyokazu Agata, Takao Oishi, Kinichi Nakashima, Takuya Imamura
Software Mentions: 7
Published: over 7 years ago
10.1177/1177932219860817
Accurate Classification of Differential Expression Patterns in a Bayesian Framework With Robust Normalization for Multi-Group RNA-Seq Count DataCited by: 10
Author(s): Takayuki Osabe, Kentaro Shimizu, Koji Kadota
Software Mentions: 5
Published: almost 6 years ago
10.1371/journal.pone.0188415
Physiological effects of a novel artificially synthesized antimalarial cyclic peptide: Mahafacyclin BCited by: 2
Author(s): Yūkō Fujita, Panpaki Seekaki, Naoya Ogata, Kazuhiro Chiba
Software Mentions: 5
Published: almost 7 years ago
10.1186/s12864-018-5089-8
Impact of energy restriction during late gestation on the muscle and blood transcriptome of beef calves after preconditioningCited by: 19
Author(s): Letícia P Sanglard, Moysés Nascimento, Philipe Moriel, Jeffrey R. Sommer, M.S. Ashwell, M. H. Poore, Márcio de Souza Duarte, Nick V. L. Serão
Software Mentions: 4
Published: about 6 years ago
10.1371/journal.ppat.1006348
HIV-1 competition experiments in humanized mice show that APOBEC3H imposes selective pressure and promotes virus adaptationCited by: 32
Author(s): Yoshiaki Nakano, Naoko Misawa, Guillermo Juarez-Fernandez, Miyu Moriwaki, Shinji Nakaoka, Takaaki Funo, Eri Yamada, Andrew Soper, Rokusuke Yoshikawa, Diako Ebrahimi, Yuuya Tachiki, Shingo Iwami, Reuben S. Harris, Yoshio Koyanagi, Kei Sato
Software Mentions: 4
Published: over 7 years ago
10.3389/fpls.2019.01570
Genetic Correlation, Genome-Wide Association and Genomic Prediction of Portable NIRS Predicted Carotenoids in Cassava RootsCited by: 18
Author(s): Ugochukwu N. Ikeogu, Deniz Akdemir, Wolfe, Uche Godfrey Okeke, Chinedozi Amaefula, Jean‐Luc Jannink, Chiedozie Egesi
Software Mentions: 4
Published: almost 5 years ago
10.3389/fimmu.2019.00479
Second Case of HOIP Deficiency Expands Clinical Features and Defines Inflammatory Transcriptome Regulated by LUBACCited by: 50
Author(s): Hirotsugu Oda, David B. Beck, Hye Sun Kuehn, Natalia Sampaio Moura, Patrycja Hoffmann, Maria Ibarra, Jennifer Stoddard, Wanxia Li Tsai, Gustavo Gutierrez-Cruz, Massimo Gadina, Sergio D. Rosenzweig, Daniel L. Kastner, Luigi D. Notarangelo, Ivona Aksentijevich
Software Mentions: 4
Published: over 5 years ago
10.1038/s42003-021-01959-9
Genomic profiling reveals heterogeneous populations of ductal carcinoma in situ of the breastCited by: 31
Author(s): Satoi Nagasawa, Yuta Kuze, Ichiro Maeda, Yasuyuki Kojima, Ai Motoyoshi, Tatsuya Onishi, Tsuguo Iwatani, Takamichi Yokoe, Junki Koike, Motohiro Chosokabe, Manabu Kubota, Hibiki Seino, Ayako Suzuki, Masahide Seki, Katsuya Tsuchihara, Eisuke Inoue, Koichiro Tsugawa, Tomohiko Ohta, Yutaka Suzuki
Software Mentions: 4
Published: over 3 years ago
10.1186/s12859-015-0859-7
Effects of Mecp2 loss of function in embryonic cortical neurons: a bioinformatics strategy to sort out non-neuronal cells variability from transcriptome profilingCited by: 9
Author(s): Marcella Vacca, Kumar Parijat Tripathi, Luisa Speranza, Riccardo Aiese Cigliano, Francesco Scalabrì, Federico Marracino, Michele Madonna, Walter Sanseverino, Carla Perrone-Capano, Mario Rosario Guarracino, Maurizio D’Esposito
Software Mentions: 4
Published: almost 9 years ago
10.18632/oncotarget.26300
Exosomes impact survival to radiation exposure in cell line models of nervous system cancerCited by: 52
Author(s): Oliver Mrowczynski, A. Madhankumar, Jeffrey M. Sundstrom, Yuanjun Zhao, Yuka Imamura Kawasawa, Becky Slagle‐Webb, Christine Mau, Russell Payne, Elias Rizk, Brad E. Zacharia, James R. Connor
Software Mentions: 3
Published: about 6 years ago
10.1371/journal.pone.0129154
High-Throughput Sequencing and De Novo Assembly of Red and Green Forms of the Perilla frutescens var. crispa TranscriptomeCited by: 37
Author(s): Atsushi Fukushima, Michimi Nakamura, Hideyuki Suzuki, Kazuki Saito, Mami Yamazaki
Software Mentions: 3
Published: over 9 years ago
10.1038/s41598-019-41205-1
A Systems Vaccinology Approach Reveals the Mechanisms of Immunogenic Responses to Hantavax Vaccination in HumansCited by: 20
Author(s): Anzar Khan, Ok Sarah Shin, Jinhyuk Na, Jae Kwan Kim, Rak Kyun Seong, Man Seong Park, Ji Yun Noh, Joon Young Song, Hee Jin Cheong, Youngja Hwang Park, Woo Joo Kim
Software Mentions: 3
Published: over 5 years ago
10.1534/g3.118.201012
Global Shifts in Gene Expression Profiles Accompanied with Environmental Changes in Cnidarian-Dinoflagellate EndosymbiosisCited by: 8
Author(s): Yuu Ishii, Shinichiro Maruyama, Hiroshi Takahashi, Yoko Aihara, Takeshi Yamaguchi, Katsushi Yamaguchi, Shuji Shigenobu, Masakado Kawata, Naoto Ueno, Jun Minagawa
Software Mentions: 3
Published: over 5 years ago
10.3390/antiox9121190
Differential Sex-Dependent Regulation of the Alveolar Macrophage miRNome of SP-A2 and co-ex (SP-A1/SP-A2) and Sex Differences Attenuation after 18 h of Ozone ExposureCited by: 7
Author(s): Nithyananda Thorenoor, David S. Phelps, Joanna Floros
Software Mentions: 3
Published: almost 4 years ago
10.3389/fimmu.2019.01960
Differential Impact of Co-expressed SP-A1/SP-A2 Protein on AM miRNome; Sex DifferencesCited by: 16
Author(s): Nithyananda Thorenoor, Yuka Imamura Kawasawa, Chintan K. Gandhi, Xuesheng Zhang, Joanna Floros
Software Mentions: 3
Published: over 5 years ago
10.3390/ijms18040747
Metabolic Effect of an Oriental Herbal Medicine on Obesity and Its Comorbidities with Transcriptional Responses in Diet-Induced Obese MiceCited by: 4
Author(s): Jiyoung Choi, Ye Jin Kim, Su-Jung Cho, Eun‐Young Kwon, Ri Ryu, Myung‐Sook Choi
Software Mentions: 3
Published: over 7 years ago
10.7554/eLife.57090
Deep evolutionary origin of gamete-directed zygote activation by KNOX/BELL transcription factors in green plantsCited by: 23
Author(s): Tetsuya Hisanaga, Shota Fujimoto, Yihui Cui, Katsutoshi Sato, Ryosuke Sano, Shohei Yamaoka, Takayuki Kohchi, Frédéric Berger, Keiji Nakajima
Software Mentions: 3
Published: about 3 years ago
10.1038/s41396-020-0693-4
Changes in the transcriptome, ploidy, and optimal light intensity of a cryptomonad upon integration into a kleptoplastic dinoflagellateCited by: 10
Author(s): Ryo Onuma, Shunsuke Hirooka, Yu Kanesaki, Takayuki Fujiwara, Hideki Yoshikawa, Shin-ya Miyagishima
Software Mentions: 3
Published: over 4 years ago
10.1371/journal.pone.0238742
A hypothetical trivalent epigenetic code that affects the nature of human ESCsCited by: 2
Author(s): Yasuhisa Ishikawa, Kenta Nakai
Software Mentions: 3
Published: about 4 years ago
10.3390/nu8100640
Effect of Green Tea Extract on Systemic Metabolic Homeostasis in Diet-Induced Obese Mice Determined via RNA-Seq Transcriptome ProfilesCited by: 20
Author(s): Jiyoung Choi, Ye Jin Kim, Ri Ryu, Su-Jung Cho, Eun‐Young Kwon, Myung‐Sook Choi
Software Mentions: 2
Published: about 8 years ago
10.1186/1471-2164-14-345
Comparative analysis of 4C-Seq data generated from enzyme-based and sonication-based methodsCited by: 13
Author(s): Fan Gao, Zong Wei, Wange Lu, Kai Wang
Software Mentions: 2
Published: over 11 years ago
10.1264/jsme2.ME19148
Transcriptome Analysis of the Ammonia-Oxidizing Bacterium <i>Nitrosomonas mobilis</i> Ms1 Reveals Division of Labor between Aggregates and Free-living CellsCited by: 3
Author(s): Rino Isshiki, Hirotsugu Fujitani, Satoshi Tsuneda
Software Mentions: 2
Published: almost 5 years ago
10.1093/pcp/pcv190
ALCOdb: Gene Coexpression Database for MicroalgaeCited by: 34
Author(s): Yosuke Aoki, Yasunobu Okamura, Hiroyuki Ohta, Kengo Kinoshita, Takeshi Obayashi
Software Mentions: 2
Published: almost 9 years ago
10.1371/journal.pone.0153311
Identification of Differentially Expressed Genes Associated with Litter Size in Berkshire Pig PlacentaCited by: 31
Author(s): Seul Gi Kwon, Jung Hye Hwang, Da Hye Park, Tae Wan Kim, Dong Jin Kang, Kyung Hee Kang, Il-Suk Kim, Hwa Chun Park, Chong-Sam Na, Ji Hee Ha, Chul Wook Kim
Software Mentions: 2
Published: over 8 years ago
10.1093/dnares/dsv018
Complete genome and gene expression analyses of<i>Asaia bogorensis</i>reveal unique responses to culture with mammalian cells as a potential opportunistic human pathogenCited by: 11
Author(s): Mikihiko Kawai, Norie Higashiura, Kimie Hayasaki, Naruhei Okamoto, Akiko Takami, Hideki Hirakawa, Kazunobu Matsushita, Yoshinao Azuma
Software Mentions: 2
Published: about 9 years ago
10.3389/fcimb.2017.00125
In vitro Multi-Species Biofilms of Methicillin-Resistant Staphylococcus aureus and Pseudomonas aeruginosa and Their Host Interaction during In vivo Colonization of an Otitis Media Rat ModelCited by: 40
Author(s): Mukesh Yadav, Sung Won Chae, Yoon Young Go, Gi Jung Im, Jae Jun Song
Software Mentions: 2
Published: over 7 years ago
10.3389/fendo.2019.00744
Integrated Analysis of mRNA and miRNA Expression Profiles in the Ovary of Oryctolagus cuniculus in Response to Gonadotrophic StimulationCited by: 8
Author(s): Shiyan Hu, Xiaoyan Liang, Xufang Ren, Yu Shi, Hang Su, Yanhong Li, Kun Du, Jie Wang, Xianbo Jia, Shiyi Chen, Songjia Lai
Software Mentions: 2
Published: about 5 years ago
10.3389/fgene.2021.645863
RNA Biogenesis Instructs Functional Inter-Chromosomal Genome ArchitectureCited by: 5
Author(s): Alessandro Bertero
Software Mentions: 2
Published: over 3 years ago
10.3389/fimmu.2020.01290
Sex-Specific Regulation of Gene Expression Networks by Surfactant Protein A (SP-A) Variants in Alveolar Macrophages in Response to Klebsiella pneumoniaeCited by: 14
Author(s): Nithyananda Thorenoor, Yuka Imamura Kawasawa, Chintan K. Gandhi, Joanna Floros
Software Mentions: 2
Published: over 4 years ago
10.3389/fpls.2020.00193
Interspecific Signaling Between the Parasitic Plant and the Host Plants Regulate Xylem Vessel Cell Differentiation in Haustoria of Cuscuta campestrisCited by: 17
Author(s): Yuki Kaga, Ryusuke Yokoyama, Ryosuke Sano, Misato Ohtani, Taku Demura, Takeshi Kuroha, Naoki Shinohara, Kazuhiko Nishitani
Software Mentions: 2
Published: over 4 years ago
10.3390/genes11010103
The velvet Regulator VosA Governs Survival and Secondary Metabolism of Sexual Spores in Aspergillus nidulansCited by: 13
Author(s): Min-Ju Kim, Mi-Kyung Lee, Huy Quang Pham, Myeong Ju Gu, Bohan Zhu, Sung-Hun Son, Dongyup Hahn, Jae‐Ho Shin, Jae‐Hyuk Yu, Hee-Soo Park, Kap-Hoon Han
Software Mentions: 2
Published: almost 5 years ago
10.3390/jcm9020358
Transcriptional Expression in Human Periodontal Ligament Cells Subjected to Orthodontic Force: An RNA-Sequencing StudyCited by: 6
Author(s): Kyunam Kim, Hee Eun Kang, Jong In Yook, Hyung Seog Yu, Euiseong Kim, Jung Yul, Yoon Jeong Choi
Software Mentions: 2
Published: almost 5 years ago
10.1038/srep16512
Dynamic changes in host gene expression associated with H5N8 avian influenza virus infection in miceCited by: 37
Author(s): Su Jin Park, Mukesh Kumar, Hyeok Il Kwon, Rak Kyun Seong, Kyudong Han, Jae Min Song, Chul-Joong Kim, Young Ki Choi, Ok Sarah Shin
Software Mentions: 2
Published: about 9 years ago
10.1038/s41598-018-37060-1
Susceptibility of Escherichia coli O157:H7 grown at low temperatures to the krypton-chlorine excilampCited by: 13
Author(s): Jae Ik Lee, Sang‐Soon Kim, Dong Hyun Kang
Software Mentions: 2
Published: almost 6 years ago
10.1038/s41598-019-40237-x
Engraftment and proliferation potential of embryonic lung tissue cells in irradiated mice with emphysemaCited by: 6
Author(s): Kazushige Shiraishi, Shigeyuki Shichino, Tohru Tsukui, Shinichi Hashimoto, Satoshi Ueha, Kouji Matsushima
Software Mentions: 2
Published: over 5 years ago
10.1038/s41598-019-55734-2
Integrative transcriptome analysis discloses the molecular basis of a heterogeneous fungal phytopathogen complex, Rhizoctonia solani AG-1 subgroupsCited by: 18
Author(s): Nobuto Yamamoto, Yanran Wang, Runmao Lin, Yueyang Liang, Yao Liu, Jun Zhu, Lingxia Wang, Shiquan Wang, Huainian Liu, Qi Deng, Shuangcheng Li, Ping Li, Anqi Zheng
Software Mentions: 2
Published: almost 5 years ago
10.1038/s41598-020-73000-8
Changes in transcriptomic response to salinity stress induce the brackish water adaptation in a freshwater snailCited by: 5
Author(s): Takumi Yokomizo, Yuma Takahashi
Software Mentions: 2
Published: about 4 years ago
10.1155/2013/542139
Extensive Differences in Antifungal Immune Response in Two<i>Drosophila</i>Species Revealed by Comparative Transcriptome AnalysisCited by: 3
Author(s): Yosuke Seto, Koichiro Tamura
Software Mentions: 2
Published: almost 12 years ago
10.18632/aging.102284
Increased calcium channel in the lamina propria of aging ratCited by: 5
Author(s): Ji Min Kim, Hyoung-Sam Heo, Sung‐Chan Shin, Hyun-Keun Kwon, Jin‐Choon Lee, Eui‐Suk Sung, Hyung–Sik Kim, Gi Cheol Park, Byung‐Joo Lee
Software Mentions: 2
Published: about 5 years ago
10.1186/s13007-015-0066-6
A bioinformatics approach to distinguish plant parasite and host transcriptomes in interface tissue by classifying RNA-Seq readsCited by: 15
Author(s): Daisuke Ikeue, Christian Schudoma, Wenna Zhang, Yasuhiro Ogata, Tomoaki Sakamoto, Takeshi Kurata, Takeshi Furuhashi, Friedrich Kragler, Koh Aoki
Software Mentions: 1
Published: over 9 years ago
10.1186/s12864-016-3210-4
Chromosome3D: reconstructing three-dimensional chromosomal structures from Hi-C interaction frequency data using distance geometry simulated annealingCited by: 42
Author(s): Badri Adhikari, Tuan Trieu, Jianlin Cheng
Software Mentions: 1
Published: about 8 years ago
10.1371/journal.pone.0184539
DNA methylation patterns and gene expression associated with litter size in Berkshire pig placentaCited by: 15
Author(s): Jung Hye Hwang, Sang Mi An, Seulgi Kwon, Da Hye Park, Tae Wan Kim, Dong Jin Kang, Go Eun Yu, Il-Suk Kim, Hwa Chun Park, Ji Hee Ha, Chul Wook Kim
Software Mentions: 1
Published: about 7 years ago
10.18632/oncotarget.14681
<i>MicroRNA-140</i> mediates RB tumor suppressor function to control stem cell-like activity through interleukin-6Cited by: 12
Author(s): Akiyo Yoshida, Shunsuke Kitajima, Fengkai Li, Chunzhen Cheng, Yujiro Takegami, Susumu Kohno, Yuan Song Wan, Nobuyasu Hayashi, Hayato Muranaka, Yuuki Nishimoto, Naoko Nagatani, Takumi Nishiuchi, Tran C. Thai, Shohachi Suzuki, Shinji Nakao, Tomoaki Tanaka, Osamu Hirose, David A. Barbie, Chiaki Takahashi
Software Mentions: 1
Published: almost 8 years ago
10.1038/s41598-020-64492-5
Intraoperative Laser Speckle Contrast Imaging For Real-Time Visualization of Cerebral Blood Flow in Cerebrovascular Surgery: Results From Pre-Clinical StudiesCited by: 23
Author(s): Antonella Mangraviti, Francesco Volpin, Jaepyeong Cha, Samantha Cunningham, Karan Raje, Maxey Brooke, Henry Brem, Alessandro Olivi, Judy Huang, Betty Tyler, Abhishek Rege
Software Mentions: 1
Published: over 4 years ago
10.18632/oncotarget.20448
A bioinformatics-to-clinic sequential approach to analysis of prostate cancer biomarkers using TCGA datasets and clinical samples: a new method for precision oncology?Cited by: 4
Author(s): Hidekazu Yoshie, Anna S. Sedukhina, Kimino Minagawa, Keiko Oda, Shigeko Ohnuma, Nobuyuki Yanagisawa, Ichiro Maeda, Masayuki Takagi, Hiroya Kudo, Ryuto Nakazawa, Hideo Sasaki, Toshio Kumai, Tatsuya Chikaraishi, Ko Sato
Software Mentions: 1
Published: about 7 years ago
10.1038/s41598-021-84992-2
Bumble bee queens activate dopamine production and gene expression in nutritional signaling pathways in the brainCited by: 11
Author(s): Kohsuke Sasaki, Kakeru Yokoi, Kouhei Toga
Software Mentions: 1
Published: over 3 years ago
10.3390/s20113288
Characterization and Performance of a Thermal Camera Communication SystemCited by: 8
Author(s): Víctor Guerra, Jaime R. Ticay-Rivas, Victor Alonso-Eugenio, Rafael Pérez‐Jiménez
Software Mentions: 1
Published: over 4 years ago
10.3390/s20185256
A Highly Accurate, Polynomial-Based Digital Temperature Compensation for Piezoresistive Pressure Sensor in 180 nm CMOS TechnologyCited by: 7
Author(s): İmran Ali, Muhammad Asif, Khuram Shehzad, Muhammad Riaz Ur Rehman, Dong Gyu Kim, Behnam Samadpoor Rikan, YoungGun Pu, Sang Sun Yoo, Kang-Yoon Lee
Software Mentions: 1
Published: about 4 years ago
10.1371/journal.pbio.3001123
Dynamics of the cell fate specifications during female gametophyte development in ArabidopsisCited by: 17
Author(s): Daichi Susaki, Takamasa Suzuki, Daisuke Maruyama, Minako Ueda, Tetsuya Higashiyama, Daisuke Kurihara
Software Mentions: 1
Published: over 3 years ago
10.3390/genes8010031
Characterization of the Transcriptome and Gene Expression of Brain Tissue in Sevenband Grouper (Hyporthodus septemfasciatus) in Response to NNV InfectionCited by: 22
Author(s): Jong‐Oh Kim, Jae-Ok Kim, Wi‐Sik Kim, Myung‐Joo Oh
Software Mentions: 1
Published: almost 8 years ago
10.1186/s12864-020-6559-3
Analysis of molecular mechanism for acceleration of polyembryony using gene functional annotation pipeline in Copidosoma floridanumCited by: 3
Author(s): Takuma Sakamoto, Maaya Nishiko, Hidemasa Bono, Takeru Nakazato, Jin Yoshimura, Hiroko Tabunoki, Kikuo Iwabuchi
Software Mentions: 1
Published: almost 5 years ago
10.1590/1678-4685-GMB-2020-0390
Transcriptomic analysis reveals that mTOR pathway can be modulated in macrophage cells by the presence of cryptococcal cellsCited by: 2
Author(s): Alícia Corbellini Piffer, Francine Melise dos Santos, Marcos Paulo Machado Thomé, Camila Diehl, Ane Wichine Acosta Garcia, Uriel Perin Kinskovski, Rafael Schneider, Alexandra Lehmkuhl Gerber, Bruno César Feltes, Augusto Schrank, Ana Tereza Ribeiro de Vasconcelos, Guido Lenz, Lívia Kmetzsch, Marilene Henning Vainstein, Charley Christian Staats
Software Mentions: 1
Published: almost 4 years ago
10.1038/s41388-020-01586-4
TAS4464, a NEDD8-activating enzyme inhibitor, activates both intrinsic and extrinsic apoptotic pathways via c-Myc-mediated regulation in acute myeloid leukemiaCited by: 14
Author(s): Hiroaki Ochiiwa, Guzhanuer Ailiken, Masataka Yokoyama, Kunio Yamagata, Hidekazu Nagano, Chihoko Yoshimura, Hiromi Muraoka, Keiji Ishida, Tomonori Haruma, Akihiro Nakayama, Naoko Hashimoto, Kazutaka Murata, Motoi Nishimura, Yusuke Kawashima, Osamu Ohara, Shinji Ohkubo, Tomoaki Tanaka
Software Mentions: 1
Published: almost 4 years ago
10.3389/fmicb.2016.00193
RNA-seq Profiling Reveals Novel Target Genes of LexA in the Cyanobacterium Synechocystis sp. PCC 6803Cited by: 33
Author(s): Ayumi Kizawa, Akihito Kawahara, Yasushi Takimura, Yoshitaka Nishiyama, Yukako Hihara
Software Mentions: 1
Published: almost 9 years ago
10.3389/fgene.2020.00941
Commentary: A Systematic Evaluation of Single Cell RNA-Seq Analysis PipelinesCited by: 4
Author(s): Koji Kadota, Kentaro Shimizu
Software Mentions: 1
Published: about 4 years ago
10.1038/s41389-021-00322-1
Precision modeling of gall bladder cancer patients in mice based on orthotopic implantation of organoid-derived tumor budsCited by: 12
Author(s): Shingo Kato, Kentaro Fushimi, Yuichiro Yabuki, Yoshiaki Maru, Sho Hasegawa, Tetsuya Matsuura, Daisuke Kurotaki, Akihiro Suzuki, Noritoshi Kobayashi, Masato Yoneda, Takuma Higurashi, Makiko Enaka, Tomohide Tamura, Yoshitaka Hippo, Atsushi Nakajima
Software Mentions: 1
Published: over 3 years ago
10.1038/srep23236
Coulomb-corrected molecular orbital tomography of nitrogenCited by: 28
Author(s): Chunyang Zhai, Lixin He, Pengfei Lan, Zhu Xiao, Yang Li, Feng Wang, Wenjing Shi, Qingbin Zhang, Peixiang Lu
Software Mentions: 1
Published: over 8 years ago
10.1038/s41598-017-08116-5
RNA-Seq using bulked recombinant inbred line populations uncovers the importance of brassinosteroid for seed longevity after priming treatmentsCited by: 33
Author(s): Naokatsu Sano, June-Sik Kim, Yoshihiko Onda, T. Nomura, Keiichi Mochida, Masanori Okamoto, Mitsunori Seo
Software Mentions: 1
Published: over 7 years ago