bioconductor: TCC | Projects | Ecosyste.ms: Papers

10.1186/s13104-019-4179-2

TCC-GUI: a Shiny-based application for differential expression analysis of RNA-Seq count data
Cited by: 75
Author(s): Wei Su, Jianqiang Sun, Kentaro Shimizu, Koji Kadota
Software Mentions: 20
Published: over 5 years ago

10.1186/s12859-015-0794-7

Evaluation of methods for differential expression analysis on multi-group RNA-seq count data
Cited by: 47
Author(s): Min Tang, Jianqiang Sun, Kentaro Shimizu, Koji Kadota
Software Mentions: 13
Published: about 9 years ago

10.1186/s12859-017-1498-y

Evaluation of logistic regression models and effect of covariates for case–control study in RNA-Seq analysis
Cited by: 15
Author(s): Seung Hoan Choi, Adam Labadorf, Richard H. Myers, Kathryn L. Lunetta, Josée Dupuis, Anita L. DeStefano
Software Mentions: 10
Published: almost 8 years ago

10.1186/s12575-018-0067-8

Silhouette Scores for Arbitrary Defined Groups in Gene Expression Data and Insights into Differential Expression Results
Cited by: 23
Author(s): Shitao Zhao, Jianqiang Sun, Kentaro Shimizu, Koji Kadota
Software Mentions: 10
Published: over 6 years ago

10.1186/1471-2105-14-219

TCC: an R package for comparing tag count data with robust normalization strategies
Cited by: 394
Author(s): Jianqiang Sun, Tomoaki Nishiyama, Kentaro Shimizu, Koji Kadota
Software Mentions: 8
Published: over 11 years ago

10.1186/s12864-021-07659-2

Inferring and analyzing gene regulatory networks from multi-factorial expression data: a complete and interactive suite
Cited by: 15
Author(s): Océane Cassan, Sophie Lèbre, Antoine Martin
Software Mentions: 8
Published: over 3 years ago

10.1038/sdata.2019.34

Global transcriptome analysis of pig induced pluripotent stem cells derived from six and four reprogramming factors
Cited by: 11
Author(s): T. Fukuda, Keiko Doi, Kenichiro Donai, Kazumasa Takahashi, Hisato Kobayashi, Takashi Hirano, Katsuhiko Nishimori, Hiroshi Yasue
Software Mentions: 8
Published: over 5 years ago

10.1186/s12920-020-00808-8

Biomarker discovery in attention deficit hyperactivity disorder: RNA sequencing of whole blood in discordant twin and case-controlled cohorts
Cited by: 11
Author(s): Timothy A. McCaffrey, Georges St. Laurent, Dmitry Shtokalo, Денис Антонец, Yuri Vyatkin, Dan Jones, Eleanor Battison, Joel T. Nigg
Software Mentions: 7
Published: about 4 years ago

10.3390/medicina55060269

A Robust Approach for Identification of Cancer Biomarkers and Candidate Drugs
Cited by: 10
Author(s): Shahjaman, Rezanur Rahman, S. M. Shahinul Islam, Md. Nurul Haque Mollah
Software Mentions: 7
Published: over 5 years ago

10.1186/s12864-017-3662-1

Evolutionary acquisition of promoter-associated non-coding RNA (pancRNA) repertoires diversifies species-dependent gene activation mechanisms in mammals
Cited by: 18
Author(s): Masahiro Uesaka, Kiyokazu Agata, Takao Oishi, Kinichi Nakashima, Takuya Imamura
Software Mentions: 7
Published: over 7 years ago

10.1177/1177932219860817

Accurate Classification of Differential Expression Patterns in a Bayesian Framework With Robust Normalization for Multi-Group RNA-Seq Count Data
Cited by: 10
Author(s): Takayuki Osabe, Kentaro Shimizu, Koji Kadota
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0188415

Physiological effects of a novel artificially synthesized antimalarial cyclic peptide: Mahafacyclin B
Cited by: 2
Author(s): Yūkō Fujita, Panpaki Seekaki, Naoya Ogata, Kazuhiro Chiba
Software Mentions: 5
Published: almost 7 years ago

10.1186/s12864-018-5089-8

Impact of energy restriction during late gestation on the muscle and blood transcriptome of beef calves after preconditioning
Cited by: 19
Author(s): Letícia P Sanglard, Moysés Nascimento, Philipe Moriel, Jeffrey R. Sommer, M.S. Ashwell, M. H. Poore, Márcio de Souza Duarte, Nick V. L. Serão
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.ppat.1006348

HIV-1 competition experiments in humanized mice show that APOBEC3H imposes selective pressure and promotes virus adaptation
Cited by: 32
Author(s): Yoshiaki Nakano, Naoko Misawa, Guillermo Juarez-Fernandez, Miyu Moriwaki, Shinji Nakaoka, Takaaki Funo, Eri Yamada, Andrew Soper, Rokusuke Yoshikawa, Diako Ebrahimi, Yuuya Tachiki, Shingo Iwami, Reuben S. Harris, Yoshio Koyanagi, Kei Sato
Software Mentions: 4
Published: over 7 years ago

10.3389/fpls.2019.01570

Genetic Correlation, Genome-Wide Association and Genomic Prediction of Portable NIRS Predicted Carotenoids in Cassava Roots
Cited by: 18
Author(s): Ugochukwu N. Ikeogu, Deniz Akdemir, Wolfe, Uche Godfrey Okeke, Chinedozi Amaefula, Jean‐Luc Jannink, Chiedozie Egesi
Software Mentions: 4
Published: almost 5 years ago

10.3389/fimmu.2019.00479

Second Case of HOIP Deficiency Expands Clinical Features and Defines Inflammatory Transcriptome Regulated by LUBAC
Cited by: 50
Author(s): Hirotsugu Oda, David B. Beck, Hye Sun Kuehn, Natalia Sampaio Moura, Patrycja Hoffmann, Maria Ibarra, Jennifer Stoddard, Wanxia Li Tsai, Gustavo Gutierrez-Cruz, Massimo Gadina, Sergio D. Rosenzweig, Daniel L. Kastner, Luigi D. Notarangelo, Ivona Aksentijevich
Software Mentions: 4
Published: over 5 years ago

10.1038/s42003-021-01959-9

Genomic profiling reveals heterogeneous populations of ductal carcinoma in situ of the breast
Cited by: 31
Author(s): Satoi Nagasawa, Yuta Kuze, Ichiro Maeda, Yasuyuki Kojima, Ai Motoyoshi, Tatsuya Onishi, Tsuguo Iwatani, Takamichi Yokoe, Junki Koike, Motohiro Chosokabe, Manabu Kubota, Hibiki Seino, Ayako Suzuki, Masahide Seki, Katsuya Tsuchihara, Eisuke Inoue, Koichiro Tsugawa, Tomohiko Ohta, Yutaka Suzuki
Software Mentions: 4
Published: over 3 years ago

10.1186/s12859-015-0859-7

Effects of Mecp2 loss of function in embryonic cortical neurons: a bioinformatics strategy to sort out non-neuronal cells variability from transcriptome profiling
Cited by: 9
Author(s): Marcella Vacca, Kumar Parijat Tripathi, Luisa Speranza, Riccardo Aiese Cigliano, Francesco Scalabrì, Federico Marracino, Michele Madonna, Walter Sanseverino, Carla Perrone-Capano, Mario Rosario Guarracino, Maurizio D’Esposito
Software Mentions: 4
Published: almost 9 years ago

10.18632/oncotarget.26300

Exosomes impact survival to radiation exposure in cell line models of nervous system cancer
Cited by: 52
Author(s): Oliver Mrowczynski, A. Madhankumar, Jeffrey M. Sundstrom, Yuanjun Zhao, Yuka Imamura Kawasawa, Becky Slagle‐Webb, Christine Mau, Russell Payne, Elias Rizk, Brad E. Zacharia, James R. Connor
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0129154

High-Throughput Sequencing and De Novo Assembly of Red and Green Forms of the Perilla frutescens var. crispa Transcriptome
Cited by: 37
Author(s): Atsushi Fukushima, Michimi Nakamura, Hideyuki Suzuki, Kazuki Saito, Mami Yamazaki
Software Mentions: 3
Published: over 9 years ago

10.1038/s41598-019-41205-1

A Systems Vaccinology Approach Reveals the Mechanisms of Immunogenic Responses to Hantavax Vaccination in Humans
Cited by: 20
Author(s): Anzar Khan, Ok Sarah Shin, Jinhyuk Na, Jae Kwan Kim, Rak Kyun Seong, Man Seong Park, Ji Yun Noh, Joon Young Song, Hee Jin Cheong, Youngja Hwang Park, Woo Joo Kim
Software Mentions: 3
Published: over 5 years ago

10.1534/g3.118.201012

Global Shifts in Gene Expression Profiles Accompanied with Environmental Changes in Cnidarian-Dinoflagellate Endosymbiosis
Cited by: 8
Author(s): Yuu Ishii, Shinichiro Maruyama, Hiroshi Takahashi, Yoko Aihara, Takeshi Yamaguchi, Katsushi Yamaguchi, Shuji Shigenobu, Masakado Kawata, Naoto Ueno, Jun Minagawa
Software Mentions: 3
Published: over 5 years ago

10.3390/antiox9121190

Differential Sex-Dependent Regulation of the Alveolar Macrophage miRNome of SP-A2 and co-ex (SP-A1/SP-A2) and Sex Differences Attenuation after 18 h of Ozone Exposure
Cited by: 7
Author(s): Nithyananda Thorenoor, David S. Phelps, Joanna Floros
Software Mentions: 3
Published: almost 4 years ago

10.3389/fimmu.2019.01960

Differential Impact of Co-expressed SP-A1/SP-A2 Protein on AM miRNome; Sex Differences
Cited by: 16
Author(s): Nithyananda Thorenoor, Yuka Imamura Kawasawa, Chintan K. Gandhi, Xuesheng Zhang, Joanna Floros
Software Mentions: 3
Published: about 5 years ago

10.3390/ijms18040747

Metabolic Effect of an Oriental Herbal Medicine on Obesity and Its Comorbidities with Transcriptional Responses in Diet-Induced Obese Mice
Cited by: 4
Author(s): Jiyoung Choi, Ye Jin Kim, Su-Jung Cho, Eun‐Young Kwon, Ri Ryu, Myung‐Sook Choi
Software Mentions: 3
Published: over 7 years ago

10.7554/eLife.57090

Deep evolutionary origin of gamete-directed zygote activation by KNOX/BELL transcription factors in green plants
Cited by: 23
Author(s): Tetsuya Hisanaga, Shota Fujimoto, Yihui Cui, Katsutoshi Sato, Ryosuke Sano, Shohei Yamaoka, Takayuki Kohchi, Frédéric Berger, Keiji Nakajima
Software Mentions: 3
Published: about 3 years ago

10.1038/s41396-020-0693-4

Changes in the transcriptome, ploidy, and optimal light intensity of a cryptomonad upon integration into a kleptoplastic dinoflagellate
Cited by: 10
Author(s): Ryo Onuma, Shunsuke Hirooka, Yu Kanesaki, Takayuki Fujiwara, Hideki Yoshikawa, Shin-ya Miyagishima
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0238742

A hypothetical trivalent epigenetic code that affects the nature of human ESCs
Cited by: 2
Author(s): Yasuhisa Ishikawa, Kenta Nakai
Software Mentions: 3
Published: about 4 years ago

10.3390/nu8100640

Effect of Green Tea Extract on Systemic Metabolic Homeostasis in Diet-Induced Obese Mice Determined via RNA-Seq Transcriptome Profiles
Cited by: 20
Author(s): Jiyoung Choi, Ye Jin Kim, Ri Ryu, Su-Jung Cho, Eun‐Young Kwon, Myung‐Sook Choi
Software Mentions: 2
Published: about 8 years ago

10.1186/1471-2164-14-345

Comparative analysis of 4C-Seq data generated from enzyme-based and sonication-based methods
Cited by: 13
Author(s): Fan Gao, Zong Wei, Wange Lu, Kai Wang
Software Mentions: 2
Published: over 11 years ago

10.1264/jsme2.ME19148

Transcriptome Analysis of the Ammonia-Oxidizing Bacterium Nitrosomonas mobilis Ms1 Reveals Division of Labor between Aggregates and Free-living Cells
Cited by: 3
Author(s): Rino Isshiki, Hirotsugu Fujitani, Satoshi Tsuneda
Software Mentions: 2
Published: almost 5 years ago

10.1093/pcp/pcv190

ALCOdb: Gene Coexpression Database for Microalgae
Cited by: 34
Author(s): Yosuke Aoki, Yasunobu Okamura, Hiroyuki Ohta, Kengo Kinoshita, Takeshi Obayashi
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0153311

Identification of Differentially Expressed Genes Associated with Litter Size in Berkshire Pig Placenta
Cited by: 31
Author(s): Seul Gi Kwon, Jung Hye Hwang, Da Hye Park, Tae Wan Kim, Dong Jin Kang, Kyung Hee Kang, Il-Suk Kim, Hwa Chun Park, Chong-Sam Na, Ji Hee Ha, Chul Wook Kim
Software Mentions: 2
Published: over 8 years ago

10.1093/dnares/dsv018

Complete genome and gene expression analyses ofAsaia bogorensisreveal unique responses to culture with mammalian cells as a potential opportunistic human pathogen
Cited by: 11
Author(s): Mikihiko Kawai, Norie Higashiura, Kimie Hayasaki, Naruhei Okamoto, Akiko Takami, Hideki Hirakawa, Kazunobu Matsushita, Yoshinao Azuma
Software Mentions: 2
Published: about 9 years ago

10.3389/fcimb.2017.00125

In vitro Multi-Species Biofilms of Methicillin-Resistant Staphylococcus aureus and Pseudomonas aeruginosa and Their Host Interaction during In vivo Colonization of an Otitis Media Rat Model
Cited by: 40
Author(s): Mukesh Yadav, Sung Won Chae, Yoon Young Go, Gi Jung Im, Jae Jun Song
Software Mentions: 2
Published: over 7 years ago

10.3389/fendo.2019.00744

Integrated Analysis of mRNA and miRNA Expression Profiles in the Ovary of Oryctolagus cuniculus in Response to Gonadotrophic Stimulation
Cited by: 8
Author(s): Shiyan Hu, Xiaoyan Liang, Xufang Ren, Yu Shi, Hang Su, Yanhong Li, Kun Du, Jie Wang, Xianbo Jia, Shiyi Chen, Songjia Lai
Software Mentions: 2
Published: about 5 years ago

10.3389/fgene.2021.645863

RNA Biogenesis Instructs Functional Inter-Chromosomal Genome Architecture
Cited by: 5
Author(s): Alessandro Bertero
Software Mentions: 2
Published: over 3 years ago

10.3389/fimmu.2020.01290

Sex-Specific Regulation of Gene Expression Networks by Surfactant Protein A (SP-A) Variants in Alveolar Macrophages in Response to Klebsiella pneumoniae
Cited by: 14
Author(s): Nithyananda Thorenoor, Yuka Imamura Kawasawa, Chintan K. Gandhi, Joanna Floros
Software Mentions: 2
Published: over 4 years ago

10.3389/fpls.2020.00193

Interspecific Signaling Between the Parasitic Plant and the Host Plants Regulate Xylem Vessel Cell Differentiation in Haustoria of Cuscuta campestris
Cited by: 17
Author(s): Yuki Kaga, Ryusuke Yokoyama, Ryosuke Sano, Misato Ohtani, Taku Demura, Takeshi Kuroha, Naoki Shinohara, Kazuhiko Nishitani
Software Mentions: 2
Published: over 4 years ago

10.3390/genes11010103

The velvet Regulator VosA Governs Survival and Secondary Metabolism of Sexual Spores in Aspergillus nidulans
Cited by: 13
Author(s): Min-Ju Kim, Mi-Kyung Lee, Huy Quang Pham, Myeong Ju Gu, Bohan Zhu, Sung-Hun Son, Dongyup Hahn, Jae‐Ho Shin, Jae‐Hyuk Yu, Hee-Soo Park, Kap-Hoon Han
Software Mentions: 2
Published: almost 5 years ago

10.3390/jcm9020358

Transcriptional Expression in Human Periodontal Ligament Cells Subjected to Orthodontic Force: An RNA-Sequencing Study
Cited by: 6
Author(s): Kyunam Kim, Hee Eun Kang, Jong In Yook, Hyung Seog Yu, Euiseong Kim, Jung Yul, Yoon Jeong Choi
Software Mentions: 2
Published: almost 5 years ago

10.1038/srep16512

Dynamic changes in host gene expression associated with H5N8 avian influenza virus infection in mice
Cited by: 37
Author(s): Su Jin Park, Mukesh Kumar, Hyeok Il Kwon, Rak Kyun Seong, Kyudong Han, Jae Min Song, Chul-Joong Kim, Young Ki Choi, Ok Sarah Shin
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-018-37060-1

Susceptibility of Escherichia coli O157:H7 grown at low temperatures to the krypton-chlorine excilamp
Cited by: 13
Author(s): Jae Ik Lee, Sang‐Soon Kim, Dong Hyun Kang
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-019-40237-x

Engraftment and proliferation potential of embryonic lung tissue cells in irradiated mice with emphysema
Cited by: 6
Author(s): Kazushige Shiraishi, Shigeyuki Shichino, Tohru Tsukui, Shinichi Hashimoto, Satoshi Ueha, Kouji Matsushima
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-019-55734-2

Integrative transcriptome analysis discloses the molecular basis of a heterogeneous fungal phytopathogen complex, Rhizoctonia solani AG-1 subgroups
Cited by: 18
Author(s): Nobuto Yamamoto, Yanran Wang, Runmao Lin, Yueyang Liang, Yao Liu, Jun Zhu, Lingxia Wang, Shiquan Wang, Huainian Liu, Qi Deng, Shuangcheng Li, Ping Li, Anqi Zheng
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-020-73000-8

Changes in transcriptomic response to salinity stress induce the brackish water adaptation in a freshwater snail
Cited by: 5
Author(s): Takumi Yokomizo, Yuma Takahashi
Software Mentions: 2
Published: about 4 years ago

10.1155/2013/542139

Extensive Differences in Antifungal Immune Response in TwoDrosophilaSpecies Revealed by Comparative Transcriptome Analysis
Cited by: 3
Author(s): Yosuke Seto, Koichiro Tamura
Software Mentions: 2
Published: almost 12 years ago

10.18632/aging.102284

Increased calcium channel in the lamina propria of aging rat
Cited by: 5
Author(s): Ji Min Kim, Hyoung-Sam Heo, Sung‐Chan Shin, Hyun-Keun Kwon, Jin‐Choon Lee, Eui‐Suk Sung, Hyung–Sik Kim, Gi Cheol Park, Byung‐Joo Lee
Software Mentions: 2
Published: about 5 years ago

10.1186/s13007-015-0066-6

A bioinformatics approach to distinguish plant parasite and host transcriptomes in interface tissue by classifying RNA-Seq reads
Cited by: 15
Author(s): Daisuke Ikeue, Christian Schudoma, Wenna Zhang, Yasuhiro Ogata, Tomoaki Sakamoto, Takeshi Kurata, Takeshi Furuhashi, Friedrich Kragler, Koh Aoki
Software Mentions: 1
Published: over 9 years ago

10.1186/s12864-016-3210-4

Chromosome3D: reconstructing three-dimensional chromosomal structures from Hi-C interaction frequency data using distance geometry simulated annealing
Cited by: 42
Author(s): Badri Adhikari, Tuan Trieu, Jianlin Cheng
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0184539

DNA methylation patterns and gene expression associated with litter size in Berkshire pig placenta
Cited by: 15
Author(s): Jung Hye Hwang, Sang Mi An, Seulgi Kwon, Da Hye Park, Tae Wan Kim, Dong Jin Kang, Go Eun Yu, Il-Suk Kim, Hwa Chun Park, Ji Hee Ha, Chul Wook Kim
Software Mentions: 1
Published: about 7 years ago

10.18632/oncotarget.14681

MicroRNA-140 mediates RB tumor suppressor function to control stem cell-like activity through interleukin-6
Cited by: 12
Author(s): Akiyo Yoshida, Shunsuke Kitajima, Fengkai Li, Chunzhen Cheng, Yujiro Takegami, Susumu Kohno, Yuan Song Wan, Nobuyasu Hayashi, Hayato Muranaka, Yuuki Nishimoto, Naoko Nagatani, Takumi Nishiuchi, Tran C. Thai, Shohachi Suzuki, Shinji Nakao, Tomoaki Tanaka, Osamu Hirose, David A. Barbie, Chiaki Takahashi
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-020-64492-5

Intraoperative Laser Speckle Contrast Imaging For Real-Time Visualization of Cerebral Blood Flow in Cerebrovascular Surgery: Results From Pre-Clinical Studies
Cited by: 23
Author(s): Antonella Mangraviti, Francesco Volpin, Jaepyeong Cha, Samantha Cunningham, Karan Raje, Maxey Brooke, Henry Brem, Alessandro Olivi, Judy Huang, Betty Tyler, Abhishek Rege
Software Mentions: 1
Published: over 4 years ago

10.18632/oncotarget.20448

A bioinformatics-to-clinic sequential approach to analysis of prostate cancer biomarkers using TCGA datasets and clinical samples: a new method for precision oncology?
Cited by: 4
Author(s): Hidekazu Yoshie, Anna S. Sedukhina, Kimino Minagawa, Keiko Oda, Shigeko Ohnuma, Nobuyuki Yanagisawa, Ichiro Maeda, Masayuki Takagi, Hiroya Kudo, Ryuto Nakazawa, Hideo Sasaki, Toshio Kumai, Tatsuya Chikaraishi, Ko Sato
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-021-84992-2

Bumble bee queens activate dopamine production and gene expression in nutritional signaling pathways in the brain
Cited by: 11
Author(s): Kohsuke Sasaki, Kakeru Yokoi, Kouhei Toga
Software Mentions: 1
Published: over 3 years ago

10.3390/s20113288

Characterization and Performance of a Thermal Camera Communication System
Cited by: 8
Author(s): Víctor Guerra, Jaime R. Ticay-Rivas, Victor Alonso-Eugenio, Rafael Pérez‐Jiménez
Software Mentions: 1
Published: over 4 years ago

10.3390/s20185256

A Highly Accurate, Polynomial-Based Digital Temperature Compensation for Piezoresistive Pressure Sensor in 180 nm CMOS Technology
Cited by: 7
Author(s): İmran Ali, Muhammad Asif, Khuram Shehzad, Muhammad Riaz Ur Rehman, Dong Gyu Kim, Behnam Samadpoor Rikan, YoungGun Pu, Sang Sun Yoo, Kang-Yoon Lee
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pbio.3001123

Dynamics of the cell fate specifications during female gametophyte development in Arabidopsis
Cited by: 17
Author(s): Daichi Susaki, Takamasa Suzuki, Daisuke Maruyama, Minako Ueda, Tetsuya Higashiyama, Daisuke Kurihara
Software Mentions: 1
Published: over 3 years ago

10.3390/genes8010031

Characterization of the Transcriptome and Gene Expression of Brain Tissue in Sevenband Grouper (Hyporthodus septemfasciatus) in Response to NNV Infection
Cited by: 22
Author(s): Jong‐Oh Kim, Jae-Ok Kim, Wi‐Sik Kim, Myung‐Joo Oh
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12864-020-6559-3

Analysis of molecular mechanism for acceleration of polyembryony using gene functional annotation pipeline in Copidosoma floridanum
Cited by: 3
Author(s): Takuma Sakamoto, Maaya Nishiko, Hidemasa Bono, Takeru Nakazato, Jin Yoshimura, Hiroko Tabunoki, Kikuo Iwabuchi
Software Mentions: 1
Published: over 4 years ago

10.1590/1678-4685-GMB-2020-0390

Transcriptomic analysis reveals that mTOR pathway can be modulated in macrophage cells by the presence of cryptococcal cells
Cited by: 2
Author(s): Alícia Corbellini Piffer, Francine Melise dos Santos, Marcos Paulo Machado Thomé, Camila Diehl, Ane Wichine Acosta Garcia, Uriel Perin Kinskovski, Rafael Schneider, Alexandra Lehmkuhl Gerber, Bruno César Feltes, Augusto Schrank, Ana Tereza Ribeiro de Vasconcelos, Guido Lenz, Lívia Kmetzsch, Marilene Henning Vainstein, Charley Christian Staats
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41388-020-01586-4

TAS4464, a NEDD8-activating enzyme inhibitor, activates both intrinsic and extrinsic apoptotic pathways via c-Myc-mediated regulation in acute myeloid leukemia
Cited by: 14
Author(s): Hiroaki Ochiiwa, Guzhanuer Ailiken, Masataka Yokoyama, Kunio Yamagata, Hidekazu Nagano, Chihoko Yoshimura, Hiromi Muraoka, Keiji Ishida, Tomonori Haruma, Akihiro Nakayama, Naoko Hashimoto, Kazutaka Murata, Motoi Nishimura, Yusuke Kawashima, Osamu Ohara, Shinji Ohkubo, Tomoaki Tanaka
Software Mentions: 1
Published: almost 4 years ago

10.3389/fmicb.2016.00193

RNA-seq Profiling Reveals Novel Target Genes of LexA in the Cyanobacterium Synechocystis sp. PCC 6803
Cited by: 33
Author(s): Ayumi Kizawa, Akihito Kawahara, Yasushi Takimura, Yoshitaka Nishiyama, Yukako Hihara
Software Mentions: 1
Published: over 8 years ago

10.3389/fgene.2020.00941

Commentary: A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines
Cited by: 4
Author(s): Koji Kadota, Kentaro Shimizu
Software Mentions: 1
Published: about 4 years ago

10.1038/s41389-021-00322-1

Precision modeling of gall bladder cancer patients in mice based on orthotopic implantation of organoid-derived tumor buds
Cited by: 12
Author(s): Shingo Kato, Kentaro Fushimi, Yuichiro Yabuki, Yoshiaki Maru, Sho Hasegawa, Tetsuya Matsuura, Daisuke Kurotaki, Akihiro Suzuki, Noritoshi Kobayashi, Masato Yoneda, Takuma Higurashi, Makiko Enaka, Tomohide Tamura, Yoshitaka Hippo, Atsushi Nakajima
Software Mentions: 1
Published: over 3 years ago

10.1038/srep23236

Coulomb-corrected molecular orbital tomography of nitrogen
Cited by: 28
Author(s): Chunyang Zhai, Lixin He, Pengfei Lan, Zhu Xiao, Yang Li, Feng Wang, Wenjing Shi, Qingbin Zhang, Peixiang Lu
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-017-08116-5

RNA-Seq using bulked recombinant inbred line populations uncovers the importance of brassinosteroid for seed longevity after priming treatments
Cited by: 33
Author(s): Naokatsu Sano, June-Sik Kim, Yoshihiko Onda, T. Nomura, Keiichi Mochida, Masanori Okamoto, Mitsunori Seo
Software Mentions: 1
Published: about 7 years ago

Projects: bioconductor: TCC

Papers Mentioning TCC 67