Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/1471-2105-14-219

https://doi.org/10.1186/1471-2105-14-219

TCC: an R package for comparing tag count data with robust normalization strategies

Cited by: 394
Author(s): Jianqiang Sun, Tomoaki Nishiyama, Kentaro Shimizu, Koji Kadota
Published: over 11 years ago

Software Mentions 8

bioconductor: baySeq
Empirical Bayesian analysis of patterns of differential expression in count data
Papers that mentioned: 139
bioconductor: BitSeq
Papers that mentioned: 28
bioconductor: DEXSeq
Inference of differential exon usage in RNA-Seq
Papers that mentioned: 226
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
bioconductor: NOISeq
Exploratory analysis and differential expression for RNA-seq data
Papers that mentioned: 321
bioconductor: ROC
utilities for ROC, with microarray focus
Papers that mentioned: 123
bioconductor: TCC
TCC: Differential expression analysis for tag count data with robust normalization strategies
Papers that mentioned: 67
cran: NBPSeq
Negative Binomial Models for RNA-Sequencing Data
Papers that mentioned: 32