Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1038/sdata.2019.34

https://doi.org/10.1038/sdata.2019.34

Global transcriptome analysis of pig induced pluripotent stem cells derived from six and four reprogramming factors

Cited by: 11
Author(s): T. Fukuda, Keiko Doi, Kenichiro Donai, Kazumasa Takahashi, Hisato Kobayashi, Takashi Hirano, Katsuhiko Nishimori, Hiroshi Yasue
Published: over 5 years ago

Software Mentions 8

bioconductor: TCC
TCC: Differential expression analysis for tag count data with robust normalization strategies
Papers that mentioned: 67
cran: ape
Analyses of Phylogenetics and Evolution
Papers that mentioned: 918
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
pypi: ape
A Productive Environment - make/rake/ant/fab-like system with support for FOSD
Papers that mentioned: 918
pypi: cufflinks
Productivity Tools for Plotly + Pandas
Papers that mentioned: 415
pypi: cutadapt
Adapter trimming and other preprocessing of high-throughput sequencing reads
Papers that mentioned: 1,562
pypi: Ion
Ion is an MVC Web Framework
Papers that mentioned: 368
pypi: tmm
Simulate light propagation in multilayer thin and/or thick films using the fresnel equations and transfer matrix method.
Papers that mentioned: 1