Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1038/sdata.2019.34

https://doi.org/10.1038/sdata.2019.34

Cited by: 11
Author(s): T. Fukuda, Keiko Doi, Kenichiro Donai, Kazumasa Takahashi, Hisato Kobayashi, Takashi Hirano, Katsuhiko Nishimori, Hiroshi Yasue
Published: about 5 years ago

Software Mentions 8

bioconductor: TCC

TCC: Differential expression analysis for tag count data with robust normalization strategies
Papers that mentioned: 67

cran: ape

Analyses of Phylogenetics and Evolution
Papers that mentioned: 918

cran: STAR

Spike Train Analysis with R
Papers that mentioned: 5,759

pypi: ape

A Productive Environment - make/rake/ant/fab-like system with support for FOSD
Papers that mentioned: 918

pypi: cufflinks

Productivity Tools for Plotly + Pandas
Papers that mentioned: 415

pypi: cutadapt

Adapter trimming and other preprocessing of high-throughput sequencing reads
Papers that mentioned: 1,562

pypi: Ion

Ion is an MVC Web Framework
Papers that mentioned: 368

pypi: tmm

Simulate light propagation in multilayer thin and/or thick films using the fresnel equations and transfer matrix method.
Papers that mentioned: 1