Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Papers: 10.1186/s12859-015-0794-7
https://doi.org/10.1186/s12859-015-0794-7
Evaluation of methods for differential expression analysis on multi-group RNA-seq count data
Cited by: 47
Author(s): Min Tang, Jianqiang Sun, Kentaro Shimizu, Koji Kadota
Published: about 9 years ago
Software Mentions 13
bioconductor: baySeq
Empirical Bayesian analysis of patterns of differential expression in count dataPapers that mentioned: 139
bioconductor: compcodeR
RNAseq data simulation, differential expression analysis and performance comparison of differential expression methodsPapers that mentioned: 11
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distributionPapers that mentioned: 9,583
bioconductor: EBSeq
An R package for gene and isoform differential expression analysis of RNA-seq dataPapers that mentioned: 261
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in RPapers that mentioned: 6,568
bioconductor: TCC
TCC: Differential expression analysis for tag count data with robust normalization strategiesPapers that mentioned: 67
cran: PoissonSeq
Papers that mentioned: 30pypi: voom
A python message bus that you can put 4 million volts through.Papers that mentioned: 136