Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12859-015-0794-7

https://doi.org/10.1186/s12859-015-0794-7

Evaluation of methods for differential expression analysis on multi-group RNA-seq count data

Cited by: 47
Author(s): Min Tang, Jianqiang Sun, Kentaro Shimizu, Koji Kadota
Published: about 9 years ago

Software Mentions 13

bioconductor: baySeq
Empirical Bayesian analysis of patterns of differential expression in count data
Papers that mentioned: 139
bioconductor: compcodeR
RNAseq data simulation, differential expression analysis and performance comparison of differential expression methods
Papers that mentioned: 11
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: DEXSeq
Inference of differential exon usage in RNA-Seq
Papers that mentioned: 226
bioconductor: EBSeq
An R package for gene and isoform differential expression analysis of RNA-seq data
Papers that mentioned: 261
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
bioconductor: TCC
TCC: Differential expression analysis for tag count data with robust normalization strategies
Papers that mentioned: 67
cran: PoissonSeq
Papers that mentioned: 30
cran: robust
Port of the S+ "Robust Library"
Papers that mentioned: 19
cran: samr
SAM: Significance Analysis of Microarrays
Papers that mentioned: 114
pypi: robust
Robust computational geometry predicates.
Papers that mentioned: 19
pypi: voom
A python message bus that you can put 4 million volts through.
Papers that mentioned: 136