Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: Explorer

https://packages.ecosyste.ms/registries/pypi.org/packages/Explorer

A module to control the Explorer HAT Raspberry Pi Addon Board
1 version
Latest release: over 1 year ago

Papers Mentioning Explorer 379

10.1186/s12859-019-2879-1
pcaExplorer: an R/Bioconductor package for interacting with RNA-seq principal components
Cited by: 146
Author(s): Fédérico Marini, Harald Binder
Software Mentions: 18
Published: over 5 years ago
10.1371/journal.pone.0254062
PHOTONAI—A Python API for rapid machine learning model development
Cited by: 8
Author(s): Ramona Leenings, Nils R. Winter, Lucas Plagwitz, Vincent Holstein, Jan Ernsting, Kelvin Sarink, L. Fisch, Jakob Steenweg, Leon Kleine-Vennekate, Julian Gebker, Daniel Emden, Dominik Grotegerd, Nils Opel, Benjamin Risse, Xiaoyi Jiang, Udo Dannlowski, Tim Hahn
Software Mentions: 15
Published: over 3 years ago
10.1038/s42003-018-0171-y
Assembling the genome of the African wild rice Oryza longistaminata by exploiting synteny in closely related Oryza species
Cited by: 33
Author(s): Stefan Reuscher, Tomohisa Furuta, Kanako Bessho‐Uehara, Michele Cosi, Kshirod K. Jena, Atsushi Toyoda, Asao Fujiyama, Nori Kurata, Motoyuki Ashikari
Software Mentions: 9
Published: about 6 years ago
10.3390/s20236723
Wide Field Spectral Imaging with Shifted Excitation Raman Difference Spectroscopy Using the Nod and Shuffle Technique
Cited by: 7
Author(s): Florian Korinth, Elmar Schmälzlin, Clara Stiebing, T. Urrutia, Genoveva Micheva, C. Sandín, André Müller, Bernd Sumpf, Christoph Krafft, G. Tränkle, Martin Roth, Jürgen Popp
Software Mentions: 8
Published: about 4 years ago
10.3389/fneur.2019.01117
Normative Data and Minimally Detectable Change for Inner Retinal Layer Thicknesses Using a Semi-automated OCT Image Segmentation Pipeline
Cited by: 33
Author(s): Seyedamirhosein Motamedi, K. Gawlik, Noah Ayadi, Hanna Zimmermann, Susanna Asseyer, Charlotte Bereuter, Janine Mikolajczak, Friedemann Paul, Ella-Maria Kadas, Alexander U. Brandt
Software Mentions: 7
Published: about 5 years ago
10.1186/s13321-019-0338-7
Software solutions for evaluation and visualization of laser ablation inductively coupled plasma mass spectrometry imaging (LA-ICP-MSI) data: a short overview
Cited by: 30
Author(s): Ralf Weiskirchen, Sabine Weiskirchen, Philipp Kim, Robert Winkler
Software Mentions: 7
Published: almost 6 years ago
10.1186/1471-2105-9-46
EzArray: A web-based highly automated Affymetrix expression array data management and analysis system
Cited by: 16
Author(s): Yuerong Zhu, Yuelin J. Zhu, Wei Xu
Software Mentions: 7
Published: almost 17 years ago
10.7717/peerj.11489
<i>covid19.Explorer</i>: a web application and R package to explore United States COVID-19 data
Cited by: 5
Author(s): Liam J. Revell
Software Mentions: 6
Published: over 3 years ago
10.1186/s13717-020-00255-4
Current and near-term advances in Earth observation for ecological applications
Cited by: 75
Author(s): Susan L. Ustin, Elizabeth M. Middleton
Software Mentions: 6
Published: almost 4 years ago
10.1186/s13073-015-0226-3
The Cancer Genome Atlas Clinical Explorer: a web and mobile interface for identifying clinical–genomic driver associations
Cited by: 70
Author(s): HoJoon Lee, Jennifer Palm, Susan M. Grimes, Hanlee P. Ji
Software Mentions: 6
Published: about 9 years ago
10.1016/j.evolhumbehav.2018.11.006
Common marmosets are sensitive to simple dependencies at variable distances in an artificial grammar
Cited by: 11
Author(s): Stephan A. Reber, Vedrana Šlipogor, Jinook Oh, Andrea Ravignani, Marisa Hoeschele, Thomas Bugnyar, W. Tecumseh Fitch
Software Mentions: 5
Published: almost 6 years ago
10.1186/s12859-016-1154-y
Proceedings of the 15th Annual UT-KBRIN Bioinformatics Summit 2016
Cited by: 0
Author(s): Eric C. Rouchka, Julia H. Chariker, Benjamin J. Harrison, Juw Won Park, Xueyuan Cao, Stanley Pounds, Susana C. Raimondi, James R. Downing, Raul C. Ribeiro, Jeffery Rubnitz, Jatinder K. Lamba, Bernie J. Daigle, Deborah C. Hay Burgess, Stephanie Gehrlich, John C. Carmen, Nicholas Johnson, Chandrakanth Emani, Kalpani De Silva, Michael P. Heaton, Theodore S. Kalbfleisch, Teeradache Viangteeravat, Rahul Mudunuri, Oluwaseun T. Ajayi, Fatih Şen, Eunice Y. Huang, Mohammad Mohebbi, Luaire Florian, Douglas Jackson, John Naber, Akm Sabbir, Sally R. Ellingson, Yuping Lu, Charles Phillips, Michael A. Langston, Rahul Kumar Sevakula, Raghuveer Thirukovalluru, Nishchal K. Verma, Yan Cui, Mohammed Sayed, Jing Wang, Qi Liu, Yu Shyr, Xiaofei Zhang, Naresh Prodduturi, Gavin R. Oliver, Diane E. Grill, Jie Na, Jeanette E. Eckel‐Passow, Eric W. Klee, Michael M. Goodin, Mark L. Farman, Harrison A Inocencio, Chanyong Jang, Jerzy W. Jaromczyk, Neil Moore, Kelly L Sovacool, Leon Dent, Mike Izban, Sammed N. Mandape, Shruti S. Sakhare, Siddharth Pratap, Dana Marshall, M Scotty DePriest, James N. MacLeod, H. Marblestone Adam, Ethan Blandford, Joel Campbell, Joshua Castlen, Brittany Dixon, Ginger Gilbert, Aaron Smalter Hall, Philip Kreisle, Jessica Lasher, B.K. Oakes, Allison Speer, Maximilian Valentine, Naga Satya V Rao Nagisetty, Rony Jose, Robert J. Rooney, David S. Hains
Software Mentions: 5
Published: over 8 years ago
10.1186/1471-2105-14-S19-S1
MaTSE: the gene expression time-series explorer
Cited by: 46
Author(s): P. Craig, Alan Cannon, Robert Kukla, Jessie Kennedy
Software Mentions: 5
Published: about 11 years ago
10.15252/embj.2020105776
Cooperative genetic networks drive embryonic stem cell transition from naïve to formative pluripotency
Cited by: 22
Author(s): Andreas Lackner, Robert Sehlke, Marius Garmhausen, Giuliano Giuseppe Stirparo, Michelle Huth, Fabian Titz-Teixeira, Petra van der Lelij, Julia Ramesmayer, Henry F. Thomas, Markus Ralser, Laura Santini, Elena Galimberti, Mihail Sarov, A. Francis Stewart, Austin Smith, Andreas Beyer, Martin Leeb
Software Mentions: 5
Published: almost 4 years ago
10.1186/s12859-019-3055-3
Cytokit: a single-cell analysis toolkit for high dimensional fluorescent microscopy imaging
Cited by: 38
Author(s): Eric Czech, Bülent Arman Aksoy, Pınar Aksoy, Jeff Hammerbacher
Software Mentions: 5
Published: over 5 years ago
10.3389/fmolb.2021.624575
Identification of Radiotherapy-Associated Genes in Lung Adenocarcinoma by an Integrated Bioinformatics Analysis Approach
Cited by: 7
Author(s): Junhao Wang, Qizheng Han, Huizi Liu, Haihua Luo, Lei Li, Aihua Liu, Yong Jiang
Software Mentions: 5
Published: over 3 years ago
10.1038/s41597-020-0574-8
TAASRAD19, a high-resolution weather radar reflectivity dataset for precipitation nowcasting
Cited by: 13
Author(s): Gabriele Franch, Valerio Maggio, Luca Coviello, Marta Pendesini, Giuseppe Jurman, Cesare Furlanello
Software Mentions: 5
Published: over 4 years ago
10.2196/medinform.9063
A Neuroimaging Web Services Interface as a Cyber Physical System for Medical Imaging and Data Management in Brain Research: Design Study
Cited by: 8
Author(s): Gabriel Lizarraga, Chunfei Li, Mercedes Cabrerizo, Warren Barker, David Loewenstein, Ranjan Duara, Malek Adjouadi
Software Mentions: 5
Published: over 6 years ago
10.1186/1471-2164-15-925
SeAMotE: a method for high-throughput motif discovery in nucleic acid sequences
Cited by: 23
Author(s): Antonella Federico, Davide Cirillo, Riccardo Delli Ponti, Gian Gaetano Tartaglia
Software Mentions: 5
Published: about 10 years ago
10.1002/ece3.4600
Leaf phenology of thirteen African origins of baobab (<i>Adansonia digitata</i> (L.)) as influenced by daylength and water availability
Cited by: 9
Author(s): Luisa Maddalena Di Lucchio, Rasmus Fensholt, Bo Markussen, Anders Ræbild
Software Mentions: 5
Published: about 6 years ago
10.1186/s13321-021-00550-y
GenUI: interactive and extensible open source software platform for de novo molecular generation and cheminformatics
Cited by: 7
Author(s): Martin Šícho, Xuhan Liu, Daniel Svozil, Gerard J. P. van Westen
Software Mentions: 4
Published: over 3 years ago
10.1186/s12920-020-00800-2
TOP2A and CENPF are synergistic master regulators activated in cervical cancer
Cited by: 17
Author(s): Beiwei Yu, Long Chen, Weina Zhang, Yue Li, Yibiao Zhang, Yuan Gao, Xianlin Teng, Libo Zou, Qian Wang, Huiying Jia, Xiangtao Liu, Hui Zheng, Ping Hou, Hongyan Yu, Ying Sun, Zhiqin Zhang, Ping Zhang, Liqin Zhang
Software Mentions: 4
Published: about 4 years ago
10.1371/journal.pone.0068551
A Systems-Genetics Approach and Data Mining Tool to Assist in the Discovery of Genes Underlying Complex Traits in Oryza sativa
Cited by: 17
Author(s): Stephen P. Ficklin, F. Alex Feltus
Software Mentions: 4
Published: over 11 years ago
10.20411/pai.v6i2.460
Generation of a Novel SARS-CoV-2 Sub-genomic RNA Due to the R203K/G204R Variant in Nucleocapsid: Homologous Recombination has Potential to Change SARS-CoV-2 at Both Protein and RNA Level
Cited by: 40
Author(s): Shay Leary, Silvana Gaudieri, Matthew Parker, Abha Chopra, Ian James, Suman B. Pakala, Eric Alves, Mina John, Benjamin B. Lindsey, Alexander J Keeley, Sarah Rowland‐Jones, Maurice S. Swanson, David A. Ostrov, Jodi L. Bubenik, Suman Das, John Sidney, Alessandro Sette, Thushan I. de Silva, Elizabeth Phillips, S. Mallal, Covid Genomics Uk
Software Mentions: 4
Published: over 3 years ago
10.1016/j.envsoft.2020.104703
PiSCES: Pi(scine) stream community estimation system
Cited by: 3
Author(s): Mike Cyterski, Craig Barber, Mike Galvin, Rajbir Parmar, John M. Johnston, Deron Smith, Amber R. Ignatius, Lourdes Prieto, Kurt Wolfe
Software Mentions: 4
Published: over 4 years ago
10.1111/ele.12284
Correlated evolution in parental care in females but not males in response to selection on paternity assurance behaviour
Cited by: 32
Author(s): Megan L. Head, Camilla A. Hinde, Allen J. Moore, Nick J. Royle
Software Mentions: 4
Published: over 10 years ago
10.1371/journal.pone.0150300
Windows Instant Messaging App Forensics: Facebook and Skype as Case Studies
Cited by: 62
Author(s): Teing Yee Yang, Ali Dehghantanha, Kim‐Kwang Raymond Choo, Zaiton Muda
Software Mentions: 4
Published: almost 9 years ago
10.1186/s43141-021-00120-7
Molecular docking studies of some selected gallic acid derivatives against five non-structural proteins of novel coronavirus
Cited by: 26
Author(s): Haruna Isiyaku Umar, Bushra Siraj, Adeola Ajayi, Tajudeen O. Jimoh, Prosper Obed Chukwuemeka
Software Mentions: 4
Published: almost 4 years ago
10.1016/j.mex.2021.101330
Automated measurement of the spontaneous tail coiling of zebrafish embryos as a sensitive behavior endpoint using a workflow in KNIME
Cited by: 9
Author(s): Afolarin O. Ogungbemi, Elisabet Teixidó, R Massei, Stefan Scholz, Eberhard Küster
Software Mentions: 4
Published: almost 4 years ago
10.1186/1471-2164-12-192
FungalRV: adhesin prediction and immunoinformatics portal for human fungal pathogens
Cited by: 64
Author(s): Rupanjali Chaudhuri, Faraz Alam Ansari, Muthukurussi Varieth Raghunandanan, Srinivasan Ramachandran
Software Mentions: 4
Published: over 13 years ago
10.1038/s41598-020-62139-z
Colorectal cancer-associated anaerobic bacteria proliferate in tumor spheroids and alter the microenvironment
Cited by: 35
Author(s): Stephen H. Kasper, Carolina Morell-Perez, Thomas P. Wyche, Theodore R. Sana, Linda A. Lieberman, Erik C. Hett
Software Mentions: 4
Published: almost 5 years ago
10.1371/journal.ppat.1009772
Signatures in SARS-CoV-2 spike protein conferring escape to neutralizing antibodies
Cited by: 68
Author(s): Marta Alenquer, Filipe Ferreira, Diana Lousa, Mariana Valério, Mónica Medina-Lopes, Marie‐Louise Bergman, Juliana Gonçalves, Jocelyne Demengeot, Ricardo B. Leite, Jingtao Lilue, Zemin Ning, Carlos Penha‐Gonçalves, Helena Soares, Cláudio M. Soares, Maria João Amorim
Software Mentions: 3
Published: over 3 years ago
10.1038/s41598-017-12087-y
Gene expression meta-analysis in diffuse low-grade glioma and the corresponding histological subtypes
Cited by: 20
Author(s): Siqi Wang, Feng Jin, Wenliang Fan, Fang Liu, Yutong Zou, Xuehan Hu, Haibo Xu, Ping Han
Software Mentions: 3
Published: over 7 years ago
10.3390/metabo8030050
Potential Metabolomic Linkage in Blood between Parkinson’s Disease and Traumatic Brain Injury
Cited by: 14
Author(s): Massimo S. Fiandaca, Thomas Groß, Thomas M. Johnson, Michele T.M. Hu, Samuel Evetts, Richard Wade‐Martins, Kian Merchant‐Borna, Jeffrey J. Bazarian, Amrita K. Cheema, Mark Mapstone, Howard J. Federoff
Software Mentions: 3
Published: over 6 years ago
10.1111/jcmm.14458
Survival analysis and functional annotation of long non‐coding RNAs in lung adenocarcinoma
Cited by: 13
Author(s): Abbas Salavaty, Zahra Rezvani, Ali Najafi
Software Mentions: 3
Published: over 5 years ago
10.1186/1471-2105-10-138
PCOPGene-Net: Holistic Characterisation of cellular states from microarray data based on continuous and non-continuous analysis of gene-expression relationships
Cited by: 4
Author(s): Mario Huerta, Juan Cedano, Darío Yesid Peña Ballesteros, A. Laborda Rodríguez, Enrique Querol
Software Mentions: 3
Published: over 15 years ago
10.1186/s13321-018-0297-4
Probing the chemical–biological relationship space with the Drug Target Explorer
Cited by: 9
Author(s): Robert J. Allaway, Salvatore La Rosa, Justin Guinney
Software Mentions: 3
Published: over 6 years ago
10.1093/bioinformatics/bty742
MOLGENIS research: advanced bioinformatics data software for non-bioinformaticians
Cited by: 41
Author(s): K. Joeri van der Velde, Floris Imhann, Bart Charbon, Chao Pang, David van Enckevort, Mariska Slofstra, Ruggero Barbieri, Rudi Alberts, Dennis Hendriksen, Fleur D.L. Kelpin, Mark de Haan, Tommy de Boer, Sido Haakma, Connor Stroomberg, Salome Scholtens, Gert-Jan van de Geijn, Eleonora A. M. Festen, Rinse K. Weersma, Morris A. Swertz
Software Mentions: 3
Published: over 6 years ago
10.1111/gcbb.12418
Predicting future biomass yield in<i>Miscanthus</i>using the carbohydrate metabolic profile as a biomarker
Cited by: 15
Author(s): Anne Maddison, Anyela Camargo-Rodriguez, Ian M. Scott, Cerys Jones, Dafydd Elias, Sarah Hawkins, Alice Massey, John Clifton‐Brown, Niall P. McNamara, Iain S. Donnison, Sarah Purdy
Software Mentions: 3
Published: almost 8 years ago
10.1371/journal.pone.0032066
Molecular Systematics of the Deep-Sea Hydrothermal Vent Endemic Brachyuran Family Bythograeidae: A Comparison of Three Bayesian Species Tree Methods
Cited by: 27
Author(s): Mariana Mateos, Luis A. Hurtado, Carlos Santamaría, Vincent Leignel, Danièle Guinot
Software Mentions: 3
Published: almost 13 years ago
10.1186/1756-0381-3-1
A reference guide for tree analysis and visualization
Cited by: 73
Author(s): Georgios A. Pavlopoulos, Theodoros Soldatos, Adriano Barbosa-Silva, Reinhard Schneider
Software Mentions: 3
Published: almost 15 years ago
10.12688/f1000research.5486.1
Viewing multiple sequence alignments with the JavaScript Sequence Alignment Viewer (JSAV)
Cited by: 16
Author(s): Andrew C.R. Martin
Software Mentions: 3
Published: about 10 years ago
10.1093/database/bau100
DEOP: a database on osmoprotectants and associated pathways
Cited by: 27
Author(s): Salim Bougouffa, Aleksandar Radovanović, Magbubah Essack, Vladimir B. Bajic
Software Mentions: 3
Published: almost 11 years ago
10.1186/1471-2105-10-180
Seq4SNPs: new software for retrieval of multiple, accurately annotated DNA sequences, ready formatted for SNP assay design
Cited by: 4
Author(s): Helen I. Field, Serena Scollen, Craig Luccarini, Caroline Baynes, Jonathan J. Morrison, Alison M. Dunning, Douglas F. Easton, Paul D.P. Pharoah
Software Mentions: 3
Published: over 15 years ago
10.1093/database/baaa103
Creating a Metabolic Syndrome Research Resource using the National Health and Nutrition Examination Survey
Cited by: 2
Author(s): Willysha Jenkins, C Peter Richardson, Ariel Williams, ClarLynda R. Williams-DeVane
Software Mentions: 3
Published: almost 5 years ago
10.3390/molecules25153530
Flavonoids and Terpenoids with PTP-1B Inhibitory Properties from the Infusion of Salvia amarissima Ortega
Cited by: 14
Author(s): Eric D. Salinas-Arellano, Araceli Pérez-Vásquez, Isabel Rivero‐Cruz, Rafael Torres-Colín, Martín González-Andrade, Manuel Rangel‐Grimaldo, Rachel Mata
Software Mentions: 3
Published: over 4 years ago
10.1155/2008/789026
NCR-PCOPGene: An Exploratory Tool for Analysis of Sample-Classes Effect on Gene-Expression Relationships
Cited by: 2
Author(s): Juan Cedano, Mario Huerta, Enrique Querol
Software Mentions: 3
Published: about 16 years ago
10.1038/s41421-019-0103-0
Molecular basis for hierarchical histone de-β-hydroxybutyrylation by SIRT3
Cited by: 64
Author(s): Xingrun Zhang, Ruili Cao, Jinrong Niu, Sen Yang, Huida Ma, Shuai Zhao, Haitao Li
Software Mentions: 3
Published: over 5 years ago
10.1186/1471-2180-9-255
Proteome analysis of Aspergillus niger: Lactate added in starch-containing medium can increase production of the mycotoxin fumonisin B2 by modifying acetyl-CoA metabolism
Cited by: 50
Author(s): Louise Marie Sørensen, René Lametsch, Mikael Rørdam Andersen, Per Væggemose Nielsen, Jens Christian Frisvad
Software Mentions: 3
Published: almost 16 years ago
10.3390/ijerph17093315
Evaluation of Functional Abilities in 0–6 Year Olds: An Analysis with the eEarlyCare Computer Application
Cited by: 3
Author(s): María Consuelo Sáiz Manzanares, Raúl Marticorena Sánchez, Álvar Arnaiz‐González
Software Mentions: 3
Published: over 4 years ago
10.1007/s11214-020-00721-7
The ELFIN Mission
Cited by: 39
Author(s): V. Angelopoulos, Ethan Tsai, L. Bingley, Christopher J. Shaffer, D. L. Turner, W. Li, J. Liu, А. V. Artemyev, X.-J. Zhang, R. J. Strangeway, Richard E. Wirz, Yuri Shprits, В. А. Сергеев, R. Caron, M. Chung, P. Cruce, W. A. D. Greer, E. W. Grimes, Kathryn Hector, M. J. Lawson, D. Leneman, Emmanuel Masongsong, Chuck Russell, C. Wilkins, David Hinkley, J. B. Blake, Nick Adair, Michael C. Allen, Mark Anderson, Michael Arreola-Zamora, Jessica Artinger, J. A. Asher, Donna Branchevsky, M. R. Capitelli, Rommel Castro, Gary Chao, Nathan Chung, Micah Cliffe, Kyle Colton, Cian Costello, D. Depe, Benjamin Domae, S. Eldin, L. Fitzgibbon, Alex Flemming, Ian Fox, D. M. Frederick, A. G. Gilbert, Anthony Gildemeister, A. González, Bryan Hesford, Sharvani Jha, Ning Kang, J. L. King, R. Krieger, K. Lian, Jason Mao, Emmons McKinney, J. Miller, A. Norris, Matt Nuesca, A. Palla, E. S. Y. Park, Carter Pedersen, Zhining Qu, Reuben Rozario, Erik Rye, Ryan Seaton, A. Subramanian, Stephen Sundin, Amy Tan, Wynne Turner, Austin Villegas, Matt Wasden, Graham Wing, C. Wong, Erica Xie, Satoru Yamamoto, Rebecca Yap, Anais Zarifian, G. Y. Zhang
Software Mentions: 3
Published: over 4 years ago
10.1016/j.agsy.2018.07.002
ASAP: A new global early warning system to detect anomaly hot spots of agricultural production for food security analysis
Cited by: 79
Author(s): Felix Rembold, Michele Meroni, Ferdinando Urbano, Gabor Csak, Kerdiles Herve, Ana Pérez-Hoyos, Guido Lemoine, Oberdan Léo, Negre Thierry
Software Mentions: 3
Published: almost 6 years ago
10.1186/s40064-015-1033-4
From pen pals to chat rooms: the impact of social media on Middle Eastern Society
Cited by: 7
Author(s): Elaine Hatfield, Richard L. Rapson
Software Mentions: 3
Published: over 9 years ago
10.7554/eLife.13323
NIH peer review percentile scores are poorly predictive of grant productivity
Cited by: 69
Author(s): Ferric C. Fang, Anthony Bowen, Arturo Casadevall
Software Mentions: 3
Published: almost 9 years ago
10.3390/s141121213
iMuseumA: An Agent-Based Context-Aware Intelligent Museum System
Cited by: 9
Author(s): Inmaculada Ayala, Mercedes Amor, Mónica Pinto, Lidia Fuentes, Nadia Gámez
Software Mentions: 3
Published: about 10 years ago
10.1038/s41598-020-70498-w
Multi-omic studies on missense PLG variants in families with otitis media
Cited by: 4
Author(s): Tori C. Bootpetch, Lena Hafrén, Christina L. Elling, Erin E. Baschal, Ani Manichaikul, Harold S. Pine, Wasyl Szeremeta, Melissa A. Scholes, Stephen P. Cass, Eric D. Larson, Kenny H. Chan, Rafaqat Ishaq, Jeremy D. Prager, Rehan Sadiq Shaikh, Samuel P. Gubbels, Ayesha Yousaf, Todd Wine, Michael J. Bamshad, Patricia J. Yoon, Herman A. Jenkins, Deborah A. Nickerson, Sven-Olrik Streubel, Norman R. Friedman, Daniel N. Frank, Elisabet Einarsdottir, Juha Kere, Saima Riazuddin, Kathleen A. Daly, Suzanne M. Leal, Allen F. Ryan, Petri S. Mattila, Zubair M. Ahmed, Michèle M. Sale, Tasnee Chonmaitree, Regie Lyn P. Santos‐Cortez
Software Mentions: 3
Published: over 4 years ago
10.3390/s20041144
Review of Top-of-Canopy Sun-Induced Fluorescence (SIF) Studies from Ground, UAV, Airborne to Spaceborne Observations
Cited by: 26
Author(s): Subhajit Bandopadhyay, Anshu Rastogi, Radosław Juszczak
Software Mentions: 3
Published: almost 5 years ago
10.1038/s41598-018-20462-6
Covert lie detection using keyboard dynamics
Cited by: 26
Author(s): Merylin Monaro, Chiara Galante, Riccardo Spolaor, Qian Qian Li, Luciano Gamberini, Mauro Conti, Giuseppe Sartori
Software Mentions: 3
Published: almost 7 years ago
10.1371/journal.pbio.1001512
Conformational Change-Induced Repeat Domain Expansion Regulates Rap Phosphatase Quorum-Sensing Signal Receptors
Cited by: 56
Author(s): Vijay Parashar, Philip D. Jeffrey, Matthew B. Neiditch
Software Mentions: 3
Published: almost 12 years ago
10.1186/s12859-019-2993-0
The MG-RAST API explorer: an on-ramp for RESTful query composition
Cited by: 8
Author(s): Tobias Paczian, W. Trimble, Wolfgang Gerlach, Travis Harrison, Andreas Wilke, Folker Meyer
Software Mentions: 3
Published: about 5 years ago
10.1038/sdata.2019.2
Qresp, a tool for curating, discovering and exploring reproducible scientific papers
Cited by: 22
Author(s): Marco Govoni, Milson Munakami, Aditya Tanikanti, Jonathan H. Skone, Hakizumwami Birali Runesha, Federico Giberti, Juan Pablo, Giulia Galli
Software Mentions: 3
Published: almost 6 years ago
10.1093/jxb/erw105
The<i>Cer-cqu</i>gene cluster determines three key players in a β-diketone synthase polyketide pathway synthesizing aliphatics in epicuticular waxes
Cited by: 80
Author(s): Lizette M. Schneider, Nikolai M Adamski, Claus Bo Vöge Christensen, David Stuart, Sonia Vautrin, Mats Hansson, Cristóbal Uauy, Penny von Wettstein-Knowles
Software Mentions: 3
Published: almost 9 years ago
10.3389/frobt.2018.00133
Authenticity, Interactivity, and Collaboration in VR Learning Games
Cited by: 9
Author(s): Meredith Thompson, Annie Wang, Dan Roy, Eric Klopfer
Software Mentions: 3
Published: about 6 years ago
10.1186/1475-2875-12-161
Providing open access data online to advance malaria research and control
Cited by: 42
Author(s): Catherine L. Moyes, William H. Temperley, Alasdair L. Henry, Clara R. Burgert, Simon I. Hay
Software Mentions: 2
Published: over 11 years ago
10.1002/cam4.3492
New small‐molecule compound Hu‐17 inhibits estrogen biosynthesis by aromatase in human ovarian granulosa cancer cells
Cited by: 1
Author(s): Xi Yang, Jiansheng Liu, Haiwei Wang, Shang Li, Yang‐Hua Yi, Yanzhi Du
Software Mentions: 2
Published: about 4 years ago
10.1186/1471-2164-10-282
Analysis of salivary transcripts and antigens of the sand fly Phlebotomus arabicus
Cited by: 64
Author(s): Jitka Hostomská, Věra Volfová, Jianbing Mu, Mark Garfield, Iva Rohoušová, Petr Volf, Jesús G. Valenzuela, Ryan C. Jochim
Software Mentions: 2
Published: over 15 years ago
10.1186/s13321-015-0061-y
Wikipedia Chemical Structure Explorer: substructure and similarity searching of molecules from Wikipedia
Cited by: 27
Author(s): Peter Ertl, Luc Patiny, Thomas Sander, Christian Rufener, Michaël Zasso
Software Mentions: 2
Published: almost 10 years ago
10.1186/1471-2164-9-457
CoGemiR: A comparative genomics microRNA database
Cited by: 37
Author(s): Vincenza Maselli, Diego di Bernardo, Sandro Banfi
Software Mentions: 2
Published: almost 17 years ago
10.1186/s40900-020-00190-w
Patient involvement in preparing health research peer-reviewed publications or results summaries: a systematic review and evidence-based recommendations
Cited by: 15
Author(s): Lauri Arnstein, Anne Clare Wadsworth, Beverley Anne Yamamoto, Richard Stephens, Kawaldip Sehmi, Rachel Jones, Arabella Sargent, Thomas Gegeny, Karen L. Woolley
Software Mentions: 2
Published: over 4 years ago
10.1186/1472-6785-14-6
Exploration forays in juvenile European hares (Lepus europaeus): dispersal preludes or hunting-induced troubles?
Cited by: 7
Author(s): Alexis Avril, Jérôme Letty, Yves Léonard, Dominique Pontier
Software Mentions: 2
Published: almost 11 years ago
10.1186/gb-2012-13-6-r55
m:Explorer: multinomial regression models reveal positive and negative regulators of longevity in yeast quiescence
Cited by: 8
Author(s): Jüri Reimand, Anu Aun, Jaak Vilo, Juan M. Vaquerizas, Juhan Sedman, Nicholas M. Luscombe
Software Mentions: 2
Published: almost 13 years ago
10.1186/s43008-021-00072-0
Genomic characterization of three marine fungi, including Emericellopsis atlantica sp. nov. with signatures of a generalist lifestyle and marine biomass degradation
Cited by: 20
Author(s): Ole Christian Hagestad, L.W. Hou, Jeanette H. Andersen, Espen Hansen, Bjørn Altermark, Li Chun, Eric Kuhnert, Russell J. Cox, Pedro W. Crous, Joseph W. Spatafora, Kathleen Lail, Mojgan Amirebrahimi, Anna Lipzen, Jasmyn Pangilinan, William Andreopoulos, Richard H. Hayes, Vivian Ng, Igor V. Grigoriev, Stephen A. Jackson, Thomas D.S. Sutton, Alan D. W. Dobson, Teppo Rämä
Software Mentions: 2
Published: over 3 years ago
10.3389/fpubh.2020.00143
Knowing Your Audience: A Typology of Smoke Sense Participants to Inform Wildfire Smoke Health Risk Communication
Cited by: 15
Author(s): Mary Clare Hano, Steven E. Prince, Linda Wei, Bryan Hubbell, Ana G. Rappold
Software Mentions: 2
Published: over 4 years ago
10.3389/fonc.2021.655757
The G4 Resolvase DHX36 Possesses a Prognosis Significance and Exerts Tumour Suppressing Function Through Multiple Causal Regulations in Non-Small Cell Lung Cancer
Cited by: 8
Author(s): Yuxin Cui, Zhilei Li, Jinglin Cao, Jane Lane, Emily Birkin, Dong Xia, Lijian Zhang, Wen Guo Jiang
Software Mentions: 2
Published: over 3 years ago
10.3389/fpubh.2021.526286
The National Children's Study Archive Model: A 3-Tier Framework for Dissemination of Data and Specimens for General Use and Secondary Analysis
Cited by: 1
Author(s): Peter K. Gilbertson, Susan Forrester, Linda Wasmer Andrews, Kathleen McCann, Lydia Rogers, Christina Park, Jack Moye
Software Mentions: 2
Published: almost 4 years ago
10.7717/peerj.5460
Spatio–temporal variation in stable isotope signatures (δ<sup>13</sup>C and δ<sup>15</sup>N) of sponges on the Saba Bank
Cited by: 8
Author(s): Fleur C. van Duyl, Benjamin Mueller, H.W.G. Meesters
Software Mentions: 2
Published: over 6 years ago
10.3389/fnmol.2017.00415
Chaperone-Mediated Regulation of Choline Acetyltransferase Protein Stability and Activity by HSC/HSP70, HSP90, and p97/VCP
Cited by: 8
Author(s): Trevor M. Morey, Warren Winick-Ng, Claudia Seah, R. Jane Rylett
Software Mentions: 2
Published: about 7 years ago
10.3389/fninf.2016.00031
Closed Loop Interactions between Spiking Neural Network and Robotic Simulators Based on MUSIC and ROS
Cited by: 22
Author(s): Philipp Weidel, Mikael Djurfeldt, Renato Duarte, Abigail Morrison
Software Mentions: 2
Published: over 8 years ago
10.1074/jbc.M116.758300
Detection of lipid-induced structural changes of the Marburg virus matrix protein VP40 using hydrogen/deuterium exchange-mass spectrometry
Cited by: 28
Author(s): Kaveesha J. Wijesinghe, Sarah Urata, Nisha Bhattarai, Edgar E. Kooijman, Bernard S. Gerstman, Prem P. Chapagain, Sheng Li, Robert V. Stahelin
Software Mentions: 2
Published: almost 8 years ago
10.1177/2472555218824280
The Academic Pill: How Academia Contributes to Curing Diseases
Cited by: 3
Author(s): Marc Bickle
Software Mentions: 2
Published: almost 6 years ago
10.1155/2012/467531
A Study of the Wound Healing Mechanism of a Traditional Chinese Medicine,<i>Angelica sinensis</i>, Using a Proteomic Approach
Cited by: 36
Author(s): Chia Yen Hsiao, Ching Yi Hung, Tung Hu Tsai, Kin‐Fu Chak
Software Mentions: 2
Published: almost 13 years ago
10.1021/acs.est.1c01326
“Biophilic Cities”: Quantifying the Impact of Google Street View-Derived Greenspace Exposures on Socioeconomic Factors and Self-Reported Health
Cited by: 8
Author(s): Anna C. O’Regan, Ruth F. Hunter, Marguerite Nyhan
Software Mentions: 2
Published: over 3 years ago
10.1016/j.ebiom.2014.10.013
A rationally designed nanoparticle for RNA interference therapy in B-lineage lymphoid malignancies
Cited by: 16
Author(s): Fatih M. Uckun, Sanjive Qazi, Hong Ma, Lichen Yin, Jianjun Cheng
Software Mentions: 2
Published: about 10 years ago
10.1186/1471-2105-11-376
The MetabolomeExpress Project: enabling web-based processing, analysis and transparent dissemination of GC/MS metabolomics datasets
Cited by: 111
Author(s): Adam J. Carroll, Murray R. Badger, A. Harvey Millar
Software Mentions: 2
Published: over 14 years ago
10.1155/2021/8890226
Deep Ensemble Model for Classification of Novel Coronavirus in Chest X-Ray Images
Cited by: 38
Author(s): Fadzil Ahmad, Amjad Farooq, Muhammad Usman Ghani
Software Mentions: 2
Published: almost 4 years ago
10.1186/s40413-018-0186-3
Extended IgE profile based on an allergen macroarray: a novel tool for precision medicine in allergy diagnosis
Cited by: 68
Author(s): Enrico Heffler, Francesca Puggioni, Silvia Peveri, Marcello Montagni, Giorgio Walter Canonica, Giovanni Melioli
Software Mentions: 2
Published: almost 7 years ago
10.1186/s13054-019-2401-1
PO2 oscillations induce lung injury and inflammation
Cited by: 6
Author(s): Stefan Boehme, Erik K. Hartmann, Thomas Tripp, Serge C. Thal, Matthias David, Dietmar Abraham, James E. Baumgardner, Klaus Markstaller, Klaus Ulrich Klein
Software Mentions: 2
Published: almost 6 years ago
10.1002/minf.201200070
PharmaTrek: A Semantic Web Explorer for Open Innovation in Multitarget Drug Discovery
Cited by: 17
Author(s): Maria C. Carrascosa, Oriol L. Massaguer, Jordi Mestres
Software Mentions: 2
Published: over 12 years ago
10.7759/cureus.10972
An Electronic Search Algorithm for Early Disseminated Intravascular Coagulopathy Diagnosis in the Intensive Care Unit: A Derivation and Validation Study
Cited by: 0
Author(s): Tabinda Jawaid, Naseema Gangat, Timothy Weister, Rahul Kashyap
Software Mentions: 2
Published: about 4 years ago
10.3390/molecules26092465
Effectiveness of Bioactive Compound as Antibacterial and Anti-Quorum Sensing Agent from Myrmecodia pendans: An In Silico Study
Cited by: 7
Author(s): Mieke Hemiawati Satari, Eti Apriyanti, Hendra Dian Adhita Dharsono, Denny Nurdin, Meirina Gartika, Dikdik Kurnia
Software Mentions: 2
Published: over 3 years ago
10.1016/j.celrep.2018.05.047
Non-random Mis-segregation of Human Chromosomes
Cited by: 69
Author(s): Joseph T Worrall, Naoka Tamura, Alice Mazzagatti, Nadeem Shaikh, Tineke van Lingen, Björn Bakker, Diana C.J. Spierings, Elina Vladimirou, Floris Foijer, Sarah E. McClelland
Software Mentions: 2
Published: over 6 years ago
10.1186/1559-0275-8-1
Proteomic profiling of the mesenteric lymph after hemorrhagic shock: Differential gel electrophoresis and mass spectrometry analysis
Cited by: 19
Author(s): Ashley A. Zurawel, Ernest E. Moore, Erik D. Peltz, Janeen R. Jordan, Sagar S. Damle, Monika Dzieciątkowska, Anirban Banerjee, Kirk C. Hansen
Software Mentions: 2
Published: about 14 years ago
10.1186/s13071-021-05021-9
Toxoplasmosis is a risk factor for acquiring SARS-CoV-2 infection and a severe course of COVID-19 in the Czech and Slovak population: a preregistered exploratory internet cross-sectional study
Cited by: 10
Author(s): Jaroslav Flegr
Software Mentions: 2
Published: over 3 years ago
10.1186/s13071-018-2764-1
Environmental risk factors and changing spatial patterns of human seropositivity for Echinococcus spp. in Xiji County, Ningxia Hui Autonomous Region, China
Cited by: 17
Author(s): Angela Cadavid Restrepo, Yu Rong Yang, Donald P. McManus, Darren J. Gray, Tamsin S. Barnes, Gail M. Williams, Ricardo J. Soares Magalhães, Archie C. A. Clements
Software Mentions: 2
Published: almost 7 years ago
10.1016/j.dib.2016.08.050
Multivariate data validation for investigating primary HCMV infection in pregnancy
Cited by: 19
Author(s): Luigi Barberini, Antonio Noto, Luca Saba, Francesco Palmas, Vassilios Fanos, Angelica Dessì, Maurizio Zavattoni, Claudia Fattuoni, Michele Mussap
Software Mentions: 2
Published: about 8 years ago
10.3389/fcell.2014.00054
Comparative transcriptomics and metabolomics in a rhesus macaque drug administration study
Cited by: 16
Author(s): Kevin J. Lee, Weiwei Yin, Dalia Arafat, Yan Tang, Karan Uppal, ViLinh Tran, Mónica Cabrera-Mora, Stacey A. Lapp, Alberto Moreno, Esmeralda V. S. Meyer, Jeremy D. DeBarry, Suman B. Pakala, Vishal Nayak, Jessica C. Kissinger, Dean P. Jones, Mary R. Galinski, Mark P. Styczynski, Greg Gibson
Software Mentions: 2
Published: about 10 years ago
10.1371/journal.pone.0012575
The Role of DNA Barcodes in Understanding and Conservation of Mammal Diversity in Southeast Asia
Cited by: 193
Author(s): Charles M. Francis, Alex Borisenko, Natalia V. Ivanova, Judith L. Eger, Burton K. Lim, Antonio Guillén-Servent, Sergei V. Kruskop, Iain Mackie, Paul D. N. Hebert
Software Mentions: 2
Published: over 14 years ago
10.1186/s12943-016-0510-x
ITGA6 is directly regulated by hypoxia-inducible factors and enriches for cancer stem cell activity and invasion in metastatic breast cancer models
Cited by: 143
Author(s): Danielle L. Brooks, Luciana P. Schwab, Raisa I. Krutilina, Deanna N. Parke, Aarti Sethuraman, David Hoogewijs, Alexandra Schörg, Lauren Gotwald, Meiyun Fan, Roland H. Wenger, Tiffany N. Seagroves
Software Mentions: 2
Published: almost 9 years ago
10.7717/peerj.520
Sequencing at sea: challenges and experiences in Ion Torrent PGM sequencing during the 2013 Southern Line Islands Research Expedition
Cited by: 18
Author(s): Yan Wei Lim, Daniel A. Cuevas, Genivaldo Gueiros Z. Silva, Kristen Aguinaldo, Elizabeth A. Dinsdale, Andreas F. Haas, Mark Hatay, Savannah E. Sanchez, Linda Wegley-Kelly, Bas E. Dutilh, Timothy T. Harkins, Clarence C. Lee, Warren Tom, Stuart A. Sandin, Jennifer E. Smith, Brian J. Zgliczynski, Mark J. A. Vermeij, Forest Rohwer, Robert A. Edwards
Software Mentions: 2
Published: over 10 years ago
10.1371/journal.pone.0230477
Same law, diverging practice: Comparative analysis of Endangered Species Act consultations by two federal agencies
Cited by: 6
Author(s): Megan Evansen, Yawei Li, Jacob Malcom
Software Mentions: 2
Published: almost 5 years ago