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Papers: 10.1038/s42003-018-0171-y

https://doi.org/10.1038/s42003-018-0171-y

Assembling the genome of the African wild rice Oryza longistaminata by exploiting synteny in closely related Oryza species

Cited by: 33
Author(s): Stefan Reuscher, Tomohisa Furuta, Kanako Bessho‐Uehara, Michele Cosi, Kshirod K. Jena, Atsushi Toyoda, Asao Fujiyama, Nori Kurata, Motoyuki Ashikari
Published: about 8 years ago

Software Mentions 9

bioconductor: Biostrings
Efficient manipulation of biological strings
Papers that mentioned: 220
Very Likely Science (65)
bioconductor: GenomicRanges
Representation and manipulation of genomic intervals
Papers that mentioned: 323
Very Likely Science (90)
bioconductor: Rsubread
Mapping, quantification and variant analysis of sequencing data
Papers that mentioned: 331
Very Likely Science (100)
bioconductor: rtracklayer
R interface to genome annotation files and the UCSC genome browser
Papers that mentioned: 107
Very Likely Science (90)
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
Very Likely Science (100)
cran: Mercator
Clustering and Visualizing Distance Matrices
Papers that mentioned: 347
Very Likely Science (75)
pypi: Circos
Circos plots in Python!
Papers that mentioned: 2,252
Very Likely Science (100)
pypi: Explorer
A module to control the Explorer HAT Raspberry Pi Addon Board
Papers that mentioned: 379
Very Likely Science (65)
pypi: show
Debug print statements, done right. E.g. show(x)
Papers that mentioned: 4
Very Likely Science (65)